Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0581100 | OGI:01011440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:21334814-21337846 | ||||||||
| Gene Symbol | OS-CAD | ||||||||||
| DNA seq | AATCCATCCCCAAACTCAACTCTCTGCTGCGGCACGACGGTGGGGTTGGGGGAGGGGTGGTGCGGCGGCGGCACGGCGGTGGGGTGGGGTGGGGCACCGGCGGTGGTCGGCAGCAGCGCCACCTTTCCACGTGATTCACGGCAACACGAATCAACCCCCATGCTGCTCCGGTGACGTCGAGGCATCTGCGAACGGCGGCCTCGATTCGCCGATTGCTCCTCCAGCATCCACTGAATTAAGGTCATTCTCTCTTCTTGATCCCTGCTATAGTTCGTGTATGTTCTTCCGTGGAATGTGCTTGGTTTGAACAATTTGGGGGCTGAGATGAACTAGGGTTTTGATGCCACCAACACTGACAACTGCAGATGAACTAGAGTTAGTATTCCGTCGGTGTTCTTGTAGAGACAGCTACAGCTTCCTCTTCTTGTTGTTCTTCTTGTCCTTCCCTCCACTTGGGCCTGGCCCCTCATCGATTGGCCAACAAAAGGTAGTAATGGTGTCCCTCCATTACTGCTGTTCTGTAAGGTTATGATGAGCTACCCACTGATGTGGAGCAACCGGCGGCGTCTGCAGCTGTTACTGTTGTGTTATTCATCGATGGGAGGATCGTGCGTAGAATTGATGTTGCTGCTGCCGGCCTGCCGTCGTGCTTTATGTTCTCCATTATCTTGCATATTGCATTAGAATGATGGTGAGATGTGGGTCTGGGGTCTGGGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTCAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCAATTCATTCTTTTCTCGTCTAATTGGGCGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGTTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAAGTGAGTTCTTCACACATGAGGTATTTAGCATAATTCAGAAAGAGGTGCTAGCTGCCAGGGACCGTTGCCTTATTGACAATGTGCAACAAGAGGGCTAGGTCAAAATCATTGATATCATTGAAGAATCCAGGAAGCCAAGAGTTGTGCGTTATGATAGACAGACAATGGTTGCAACGTGCACATGTATGCTATTTGAAACTCATGGTATACCATGTCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTAGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTTATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCGCCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGATAAAGAAAAAAGAGAGAGTACCACAAAGGTGCAAGAAGTGCAAACAAGTCGTGCTGCACGATTCGCGCAACTGTCCTAACAAAGAACCACAACAGTGATGCAAGGTTCTATACATCATGCTTCCTTAACTATCAGTCATCTTATAATAGTTGTCATACAATTTCCTGGAAGAAGTTAGCGTTTCTCTGTAAAAGATTGTGTGTTGTCATCCAAAATTCAACTAACGGTGTATCGTAAAGTCTATAGTGTGCCAAGAACATTCTGGTTCTAATGGACATACTGTAGATTTCCTTGGAACAAAGTAGCAATTCATGTAAAAGATAATAGGTGGCCATATAATATTTAACTAACAGTAGGTAGTGAACACATGTTGAAATATAATTAGTTGGGACCATTGTGAGGTAATAACATTTTTAGTATTGTCGTCGTGAGTCTAATTAATAATATAAATCGCAAATGTACAATTGTCCTGTTAGCTGATGTGGTCCCTTGCATTTTTGCATGGGTTCTTATTTATAGCTCTTTAAGTTTTTGACTGTATGATTTGGGACCTAGTGTTATCAACTTGGAACAAAGTATAAAAAAATATGGGAAGGATTCGAGGTGGGCAAGTGGGCATGTAATATACAGCGGGATGTGTAGGAAGCACAATCATTTTGGATTGCATTTTCAGTTTGGAATGGTTAAGAATTACATATGGAAAATATTTAAATATATTGCGACAAGTTCGGCTCATATACAAATGTATATTGCGACAAGGACATTTTGGACAGCTAATATTCAGCTTGAAATGGTTAAGAGTACATATGGGAAGACAGGAAAAAAATATTAGAACAACCATTGTGTTCCAGGAACATTTTGTTATCTTAGTTTGGTCCGTAGTGTGAATAAAACTTTGTATGTATCTATGCTCACCAGTATATATGTCCTTAACAATTTTTTATCTATGCTCACAAGTATATATGTCCTTCTTAACAATTTTTTTCACTATGCAGTTTGCTGGGTGCAGGTTTTTTTTTGCTGAGAGCAGCTGGCGAGAATTCTTTTGCTGAGAGTAGTTTTTTGTTCAAAGTAGAGCCACTGCCATCATCCAGTGCACACGTGTGTGATCTATTAATAGATTTTAGCCATTTAATAGCAAGGTTGCATTTTGATTAGACAACACCTTGAAGGGGATAACTAATATTTGTGCACAAGTGTTGTAACTTATGAATGTTATTACCTGCCAAAACTCTGTGGGATCTAAATTGTGTCAGCAGAAGACATCTGAATATCAGACCATGTCGGTATACATTGATGGACTAGGTTGACTCTGCCAATTGTTTGTGGCCACAATCTGGACCTATGATTTTCTAGGAAAATCCTAAATATACTTGAACTGG
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| CDS seq | ATGGTTGCAACGTGCACATGTATGCTATTTGAAACTCATGGTATACCATGTCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTAGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTTATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCGCCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGATAAAGAAAAAAGAGAGAGTACCACAAAGGTGCAAGAAGTGCAAACAAGTCGTGCTGCACGATTCGCGCAACTGTCCTAACAAAGAACCACAACAGTGA
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| Protein seq | MVATCTCMLFETHGIPCRHLIPVLRSAQLSELPRYYLLERFRKDCKKTHVFDADGILLEENTSNSNDPVMQKMLSEACNQMEKLILQAKQSAAAMQLLRDELVVLGDKLNEMVPEKELSQIEEFESYLGCSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKKIKKKERVPQRCKKCKQVVLHDSRNCPNKEPQQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0581100 | OsNip_03t0581100-01 | Chr03 | 21334814 | 21337846 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTTGCAACGTGCACATGTATGCTATTTGAAACTCATGGTATACCATGTCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTAGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTTATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCGCCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGATAAAGAAAAAAGAGAGAGTACCACAAAGGTGCAAGAAGTGCAAACAAGTCGTGCTGCACGATTCGCGCAACTGTCCTAACAAAGAACCACAACAGTGA
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| Protein seq | MVATCTCMLFETHGIPCRHLIPVLRSAQLSELPRYYLLERFRKDCKKTHVFDADGILLEENTSNSNDPVMQKMLSEACNQMEKLILQAKQSAAAMQLLRDELVVLGDKLNEMVPEKELSQIEEFESYLGCSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKKIKKKERVPQRCKKCKQVVLHDSRNCPNKEPQQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.400346 | 0.773022 | 1.942718 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38440 | RBH | 0.270557 | 0.519579 | 0.499916 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0581100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036770 | SBH | 0.677223 | 12.346950 | 4.458741 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036460 | SBH | 0.697987 | 4.249951 | 3.703143 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036520 | SBH | 1.950323 | 6.121216 | 10.805071 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018750 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036310 | SBH | 8.793895 | 24.294544 | 19.153130 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0368400 | RBH | 1.2400875 | 1.723231 | 3.133729 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0036110 | SBH | 0.286296 | 0.554074 | 1.279265 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0370900 | RBH | 2.055344 | 2.741092 | 9.953044 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036610 | SBH | 0.678666 | 9.623447 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041170 | SBH | 8.885387 | 3.959869 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028030 | SBH | 0.812701 | 2.598344 | 2.006791 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041270 | SBH | 0.166573 | 1.760761 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041040 | SBH | 0.558275 | 2.048293 | 1.398166 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040710 | SBH | 1.286959 | 20.309376 | 6.239305 |
