Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0069800 | OGI:03011410 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr03:4263447-4268774 | ||||||||
| Gene Symbol | GATA22, OsGATA22 | ||||||||||
| DNA seq | CGTCACTCGCATCTCCTCCGCCTCCGGTATCCAACCTCCCGCACCAAATCCCAATCCGGATCCCCCACGCTAAACCCTAGCTTTAAACCCCCGAATCCAACCAATCCCCGCGCCGATTCCCGCCATTTCGCGCACCTCGTGCCAGGATCTGCTCCTGGGCGGCGCTCTTTTAGAAAAAAACCTGGCAGATTTCGACTTCTGCAATGGAGCCCGTCGATTTCGGTGGGGGAAAAGGTTATGGAAGGAATCTCTGTCTGAGCAACGATCTGATCCTTCTGGAGTAAGGTTTTGTGCTGGGTGGATTTGGGATTCGATGTGGCTGGAGTTGAGCTCATCTCGGGGAGAAGGGATTCGGACGGTGTTTGATCTTTCTGTCGTGATTGCTTTGCTTCGGGTTTGCTCAGCGCTAGAAGATTTGCTCGCAGAATCCCGCGCGGAGTTTTGAAGAAAGCTTGGTATTTCCTGGTTCGTTGTGGTTTGTAAGCGATGCAGTTCGAGGACGGGGGAGATGTTCATGTTGGTGCCGGTGAGGGTGAAGATGGTGGCAGGGTCACAGTGGATGAGCTTACCAGGTGAAGAATTTTTCTTTCTTTTTTATTTTTACCGTATCCTACATTCAGCAGTTCAGCATCGAGATTTCATATGTGCAATGTTTGGGTGAAAAGCTAACGTGCCAAGCTAGTTATAACTGTAGCTAGGGCCTACCCTCCATAATATAGTTTTTTTTTTTTGAAACCGTCCCTCCATAATATAGTGACCTAGTAACGGACGAGACATTTCATAGTACAATAAATCTAACATGCTCTTGTCTAGATTTATTGTAATATGAAATATTGAAATGTCTCATCCAGTACTAAGTTGCTATATTATTAGACGGAGGGAGTACGAGATATCACGAGAGAAGAGAGCTCTGGATGTTAGTACTATTTAGTACCCTTTTGCAGTTCTTTTCTTTTCCCAATTCTAGTCTTCTGTAGTTATGGTTAAGCGAGACCGGATTCAAATTTAGAAGAGTAACACTTCCTCGAGTCAGTATTACTTGTCGTTTCAGACAGGGAAATACTACTAAGTGCAAATCAATTCCACTACCTGAAACATCATATATTTCCGTCCGGAGGGAGTAGTAGCTGATCATCAATGCCTTTTCTCAGATCGGGTTATGAAAGCAATAAAATTATCAAAGGCTGTCTGTCGGTCCATGCATATGGTGGAATGTTAGTATTGCACACTGACTACTTAGCATGTTGGTGACTACTATACTACTCAGTACTATCAACATTCAGCAGCATGCTGGAAATTGATACAGATCATTTTCTCTTGAATCAAGGACTCAATTATTCATGGTAGTGAGACGATTCCTAACTTTTATGTTATAGTTTTTCAGATGCCTACGTTGTGGCATCAGTGCAAATGCGACGCCTCATATGCGCCGTGGACCAGAGGGACGGAGAACTTTATGCAATGCTTGTGGTATAGCATGGGCAAAGGTATTCTAATTGTTCTCCACCACTTATTGTTTATACTCGCTCCAATTCCAAATGTAAGTCGTTTTGGTTTTCTACATGCAGGGAAAAGTGCGAAAAGTTATTGATTCTGATACCCCCATGGATAATGCCATGTTTGCACAAATGGTTCCAGAACTTAGCATGGAATTCGATGACGAAGATAAAGCATATGAGTTCTACAACAGGTACGCTGGACATGTGGGATTCAGTGTTCGTAAAAGTTCATCGGACAAATCAGCTGAAAACATCACAAGGTCAAGAACCTTTGTATGCTCGAGAGAAGGTTTTCGTAAGGACAAGAAAGGAGCTAAGGAAGTTAAAAGACCACGGCCAGAAACAAGAATAGGGTGTCCTGCACGAATGTCAATTAAGATTACATCTGATGGTAAATATCGTATATCTGAATTCGTACCAGATCATAACCATCAGCCAGCACCCCCATCAACCATGCATATGCTGAGGTCTCAGAGAGTACTCACTGAGCTGCAAACAACTGAAGCAGACTCCTTAGAAGATTCAGCGACACCATCAAGGTTTTCTAGTTGCTCTTTGGTGAAGCAAGCAGAAGTAATTACTCATACCAATTTTCTCCCTGCTGAATACAGGTGCTCTCTTTGTTCAAAGCGCAAGAAAAATATGCAACCTGGTGATGCAGGAGTAACTGTAAAGTACCTGCAAAGCATGCAGCTAAGCAACCCTTCTTTCTTTTATGCTGTCCAGCTTGATGAGGATGACAAACTGACAAACATTTTCTGGGCCGATTCCAAATCTAGAACCGACTTCAGCTACTACAGTGACGTGGTTTGTTTGGACACAACCTACAAGATAAATGAACATAGCAGACCATTAACACTATTCCTTGGAGTGAACCACCACAAGCAAATCTCCATATTTGGTGCTGCCTTGCTTTATGATGAATCAGAAGAGTCTTTCAAGTGGCTATTTGATACATTCAAGATTGCTGCAAATGGAAAGCAACCAAAAACAATCTTGACAGATTGGTCTATGGCAGCAACTACGGCTTCTGCGATAACAGCAGCATGGCCTGGAACAGTTCATCGCCTTTGTCCATGGCAAGTGTACCAAAACTCTGTCAAGCACCTTAATCACATCTTTCAAGGCTCCAAAACATTTGCAAAGGATTTCGGAAAATGCGTTTATGACTACGATGACGAAGAGAACTTCTTGCTTGGATGGAATACTATGCTAGAGAAGTATGATCTACGAAACAATGAGTGGATTAAAAAAATATTTGATGATCGTGATAAATGGTCTCCAGTATACAATCGCCATGTATTCACTGCAGATATAAAAAGTTCTTTGCAGTCGGAAAGTGTTAGAAATGCCTTGAAGAAGTCCTTGAGTCCACAATTTGACCTGTTATCTTTCTTTAAGCACTATGAAAGAATGCTTGATGAGTTTCGTTATGCAGAGTTACAAGCTGATTTTCATGCAAGCCAAAGCTTCCCTAGAATTCCTCCATCCAAAATGCTGAGACAGGCTGCTAACATGTACACACCAGTGGTCTTTGAAATTTTTCGCAGGGAGTTTGAGATGTTTGTCGATTCCGTGATTTATAGCTGTGGGGAGGATGGAAATGCATTCGAATATAGAGTAGCAGTAACAGATAGGCCTGGGGAACACTATGTTAGGTTTGACTCTGGCGACTTATCTGTTGTATGCAGTTGTAAAAAATTTGAAGCAATGGGTATCCAGTGTTGCCATGTGTTGAAAGTTCTAGATTTCAGAAATATAAAGGAGTTACCACAAAAATATTTCATGAAAAGATGGAAGAAGGCTGTCAAGTCTGCAAGTACAGGCAATCAAGAACTTCTGAATGGAGGAGTTTCACAAATTCCCAGCTCTTATTTGAATGTTCCCGTGCCATTTATAGATCCACAACATGTGCAATCAAATAACGAGCTTAACCATGTAAGTTGATCAAATATAACTATTCATTAAGTTTATTTTTTATCCTTAGTAAAGGTTGAGGTTCAATATGCGTGATCAACTACAGGACACTTCTGTTTCTAACTCCCACCAGCAGGCCCTTCATGGAGGTGCACAGGGAAGTCAGGTAAGACCCCTTGGTAGAACTGAACTCACTTGTGCAATACTTAATTTCTAAAAGCAATATTGGTGCTTTTGCTCTTCTCATAGTATTTTGTATGCACCGCCTTCTGAGGCAAGCAATCCATTAAGTTTGTATGCACTCAAATTTTGTTAGAAAAATATTCTCAAGATCGCCACATTCCATGGTTGTATACGATTTGAGACCACTGGTGACAAAAGAATACGCTCACATCTTTTTGTGCATTTCTGGCTTTTAGATATACAGAAGATTAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATCTATCTAAATTCATTAACATCAATATGTATGTGGGAAATGCTAGAATGACTTACATTGTGGAACGGAGGAAGTATCTATTAATTGGAACACTCAATATAAGTAAATTAGACTCATGATTATATGGAAGATTTTTTTAATTTGCCTTTCTGACTTTTGGTTGTTTTACAGGGTTATGCTCCCTTAGCAGGGATTCAGCAGCAGCAGTTTATTGGAAATTTTCGCCTGAACCATGAAACAGGTTTCTTATGAAAAACAGAACTGGCGCTTTTGCCCTGTTCTTGTCTTCCAAAAACTTTTTTGCTCTGTTATTCCAAAGACAATGACACAAGACATCGAAACAGTCTCTAGTCTCTACCTTTACATCTCCCTTGTAAATTCTAATTCATATTTCGTAGCATCACAAATATACAAGCTCAATAGTTTTCAGGAAACTACGTTCAGAGTTTAAACGCTGTTGGACCTTGGAGGAAGTACCCGCTAAGACATAAGTCTGATTATTGGCCTAAAATAAGGTTGTATTATTAGCATATGTGATGTAGTATATACAGACATACAGTTCGTAGTTCTGGTGATTTTGCAGAAGCTTTCAATTGCTTCGCTGCCAAATGGCCACTTCAACCATGCACTCTTTTAATCTAATGCTCTCACTGTTTCCAATTTTCAGTGTTGGCGTGGTGGATTATTTGAATTTCCTTATTAGGATCTTCTATTACTCTCATAGTAGTACCACTGCTAGAAAATGTTTTCTTAAAGAAAAAGGTACTTTCAGAATGCTACATGTTTTGGATAGCCATATTTCCACAACCTGACTGACGTCTGTGGTTACTGATTACCTAACCAGATAATCAAATCCATGTGCCTGCATTACTCAAAGGAAGACGATTTCCCACTGCTGATGAACTATGTTGTCTCCTTGCCATTTGGAACAAGTTCAGTACAGAAGACAATCAAACTATTTTGCAGTCAGGTTTCAGCGTTGACGAGCGTACCATTGTCTGAATTACTCCACGTCTGCAAAAACATAATATGAAAAAGAGAAGCACAACCACAACCACCTGACGAAACAAAACTGAAATTTGAAGTACATGTACTAGCAAATACTTCTACTTCTCCTGTCCAAATCATCGTATTACGCACTATCACACACACACACGATCTACAGTACGCGGTAGAGATCAAGAAATGAGACGGCGTCAAAATGGGAACAAAAGATAGGAATAAGATAAGAAAATGATGTGTTGTTCGGTTCTTCGGTGAAGCTCCGAAGGATGTTCTTGGATTGCTCTCCTGGTCTGTCATGGGTGTTTCTGACGAATTTGATGATCGCTGTTCCTGAGACAATCAAACAAATTGCAGCCGATGGAAAAGATGGCCTTAATAAGCTGTTAATTCGTTG
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| CDS seq | ATGCAGTTCGAGGACGGGGGAGATGTTCATGTTGGTGCCGGTGAGGGTGAAGATGGTGGCAGGGTCACAGTGGATGAGCTTACCAGATGCCTACGTTGTGGCATCAGTGCAAATGCGACGCCTCATATGCGCCGTGGACCAGAGGGACGGAGAACTTTATGCAATGCTTGTGGTATAGCATGGGCAAAGGACACTTCTGTTTCTAACTCCCACCAGCAGGCCCTTCATGGAGGTGCACAGGGAAGTCAGGGTTATGCTCCCTTAGCAGGGATTCAGCAGCAGCAGTTTATTGGAAATTTTCGCCTGAACCATGAAACAGATAATCAAATCCATGTGCCTGCATTACTCAAAGGAAGACGATTTCCCACTGCTGATGAACTATGTTGTCTCCTTGCCATTTGGAACAAGTTCAGTACAGAAGACAATCAAACTATTTTGCAGTCAGGTTTCAGCGTTGACGAGCGTACCATTGTCTGA
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| Protein seq | MQFEDGGDVHVGAGEGEDGGRVTVDELTRCLRCGISANATPHMRRGPEGRRTLCNACGIAWAKDTSVSNSHQQALHGGAQGSQGYAPLAGIQQQQFIGNFRLNHETDNQIHVPALLKGRRFPTADELCCLLAIWNKFSTEDNQTILQSGFSVDERTIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0069800 | OsMH63_03T0069800-mRNA-1 | Chr03 | 4263447 | 4268774 | + | maker | ||
| CDS seq | ATGCAGTTCGAGGACGGGGGAGATGTTCATGTTGGTGCCGGTGAGGGTGAAGATGGTGGCAGGGTCACAGTGGATGAGCTTACCAGATGCCTACGTTGTGGCATCAGTGCAAATGCGACGCCTCATATGCGCCGTGGACCAGAGGGACGGAGAACTTTATGCAATGCTTGTGGTATAGCATGGGCAAAGGACACTTCTGTTTCTAACTCCCACCAGCAGGCCCTTCATGGAGGTGCACAGGGAAGTCAGGGTTATGCTCCCTTAGCAGGGATTCAGCAGCAGCAGTTTATTGGAAATTTTCGCCTGAACCATGAAACAGATAATCAAATCCATGTGCCTGCATTACTCAAAGGAAGACGATTTCCCACTGCTGATGAACTATGTTGTCTCCTTGCCATTTGGAACAAGTTCAGTACAGAAGACAATCAAACTATTTTGCAGTCAGGTTTCAGCGTTGACGAGCGTACCATTGTCTGA
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| Protein seq | MQFEDGGDVHVGAGEGEDGGRVTVDELTRCLRCGISANATPHMRRGPEGRRTLCNACGIAWAKDTSVSNSHQQALHGGAQGSQGYAPLAGIQQQQFIGNFRLNHETDNQIHVPALLKGRRFPTADELCCLLAIWNKFSTEDNQTILQSGFSVDERTIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.059623 | 3.8336965 | 7.750927 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0181600 | RBH | 0.904452 | 0.919453 | 2.112373 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08370 | RBH | 0.609474 | 0.598096 | 0.469367 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0181600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0415800 | RBH | 5.351067 | 11.8367555 | 13.720597 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0070000 | RBH | 5.266263 | 7.6928585 | 16.883605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
