Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_02G0564500		OGI:02097180 \| 15/16			Minghui 63 \| MH63RS3 \| HZAU			Chr02:35842935-35845298		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		WAK19, OsWAK19
DNA seq		CTAGGGGTGTAGCTGGTATCTCCTCAGCATCTCTAGCTTCTCAGCGACCTCCTTCATCATCGGTCGTTCCTCACCACTCATGCTCACACATCGCATCACGAGGTGTGTAATCTCTTGGAGCACCTCCTCTGTCATCTCATTCCTCACCTGGCTGTCAATAAGTTCCTCATGGCGGCCATCTCTCACAGCCGTCATGAAGCAAGACACGAGGCTCCTGTCTTCCTCTGATCCGCCGAAGTAGAGTGCCTTCTTCCTGGTTAGAAGCTCCAGGAGGACAACACCAAAACTGTACACATCACTCTTGTCAGTCAGCTGACATGTCATGAGGTACTCAGGGTCTAGGTACCCACATGTCCCTTGCACCAGAGTTGCAATCTCGAACTCATCATTAGGCACCAGTTTTGATGTCCCAAAATCTGAAACTTTTGCGGTGAGTTTGTCATCAAGGAGGATATTTGCCGTCTTGACATCTCCGTGGAGGATGGGTGGTGAGGCTGAAGAATGCATGTAGGAGAGTGCCTCTGCTGACTCTGCCGCTATCCGAAGACGAGAGTCCAAGGATATGACAGTGTTGAGAGTGCCGCCATGGATGTAGTGGTCAAGGGTGCCGTTTGAGACAAACTCATAAACTAGCTTGGGAACTTCGACTTCAAGACAACAACCGAGCAACTTGACGACGTTCTTGTGGTTGATCTGGGAGAGGATGCACATCTCCTTCGCAAATTCCTTGGTCTGTGCCTCCTCTATCATCTTTGACTTCTTGATGGCCACCACCATGTTGTCCTCCAGGACGCCTTTGTAGACGATGCCGTAGCCACCGCGGCCAAGAACACGGTCGGCGGCAAAGCTGTTGGTGGCCTTCTCGAGCTCTTCCTTGGAGAAAATCTTGAACCCACCCGCTCCGCCGCTGGTGCCACCATAGGAACGCATCTGTTGCTGGAGAAGCACGCCACCGTTCTGCTCAAAGAATCTTTGCTTCGTTCTGATGAGCTTCCTCTTTTGGAGCCCCAGGTAGAGCCAGAACAACATGAACAGTAACAGGAACACACCGACGCTGACCCCTGAACATGGTATACCAATGATATTCATTAGTTCCCGACAAGAAAATAAGTGCATTAATAATGTTGCTTGATAACCGGCCGATTGAATACCTGTAACGACTTTCAGAGCTAACGTGAACTTGTCCGTTGGGTGGCATCCATTCTCCTGGGTTGCATTTCCACTAGTCCCCGGTCGGCATTCGCAGGTGTAGCTTCCGATTGTGTTTGTGCATTTTCCGAAGCATGGGTATTCCTTTGTGCGTTGGCATTCATCGATGTCTAGCGTTGGCAAAGCAAAACATATTCATCACTTAATTTTTTTTGTCAGAAAGATTATTACTCCATTTGCGTTTTAGGCACCCACCTTTGCATCCACCGTCGAGGTAGGGGTTGCCCTCGTAGCCCTTGGAGCACCTGCACCGGTACCCCTGGCCGTCGCTGGCGTTGAAGCACTCGCTGTGCGCGCTCCGGCACGCGTAGTCCGTCCTGTTGCGCACGGCGATGTCGCAGTTGCCGGCGTTCCGGATGGCCCAGTCGAGCACGACGGGGACGGTGAAGTCGTTGGTTCGGTTGAAGAAGGCGCGATAGCTGTAGGTGGTGTTGATCCACTTGTCCTCCGCCACGAACACATACTGGCATTTTGTTGAGTCGAGATGGCGGAAGACGGGTTCCGTCGGCGGGAGCTCCTGTTGGTCGGGGACGTTTCGCGTTGGTTCCTCTGTCTTATTCAACGTATGTAAGGCTTGTAGTCGTTGAGAGCGCGGGGTATGCTGTTCTGGCAGCACCCCGACTCGCCGGTGCACTGGCCCCGGAAGTCTTGATCAGCACCCTGCGACTGCGACCGCCGGCACGTGGATGTGCAGCCAGTGACGTAGTTATCGTCGGCGTCAACCAAGTAGCCAAGGACGGGGCACCCGAGCACGACAAGGCGGTTCCTCGCCGTGGAGAACCTGTAGGCAATGCTGTGGCCGTAGTCCGGCGTGCGGTAATGCCCACTGATTGCTTTGAAACGGTCGTCGTGGCAGTTGCTTCCCGCATCGACGAAGACCCGGACCTCGCCGTCGGCGATGGAAAGGCTCACCAGCTTTTTCTCACGATCATCCAGGTAGTTGAAGTGCGGAGTGTTGCCGTCGCACTCGAGCTGGAAGTCTCTGTCCCGGGCGCAGCCGGCGCCAATGCCGAAGGGGTAGGAGATGCTGATGTTCCCGCACTTGTCGGGGCAGCCCGGCCATGGCTGAGCCGATGCCGGTGTCACCGGCGCCAAGCAGACGAGCATGACGGCTAATAAGGCAACCGCCTGATGCAGTGTACTAGTGGTAGCCAT More
CDS seq		ATGGCTACCACTAGTACACTGCATCAGGCGGTTGCCTTATTAGCCGTCATGCTCGTCTGCTTGGCGCCGGTGACACCGGCATCGGCTCAGCCATGGCCGGGCTGCCCCGACAAGTGCGGGAACATCAGCATCTCCTACCCCTTCGGCATTGGCGCCGGCTGCGCCCGGGACAGAGACTTCCAGCTCGAGTGCGACGGCAACACTCCGCACTTCAACTACCTGGATGATCGTGAGAAAAAGCTGGTGAGCCTTTCCATCGCCGACGGCGAGGTCCGGGTCTTCGTCGATGCGGGAAGCAACTGCCACGACGACCGTTTCAAAGCAATCAGTGGGCATTACCGCACGCCGGACTACGGCCACAGCATTGCCTACAGGTTCTCCACGGCGAGGAACCGCCTTGTCGTGCTCGGGTGCCCCGTCCTTGGCTACTTGGTTGACGCCGACGATAACTACGTCACTGGCTGCACATCCACGTGCCGGCGGTCGCAGTCGCAGGAGGAACCAACGCGAAACGTCCCCGACCAACAGGAGCTCCCGCCGACGGAACCCGTCTTCCGCCATCTCGACTCAACAAAATGCCAGTATGTGTTCGTGGCGGAGGACAAGTGGATCAACACCACCTACAGCTATCGCGCCTTCTTCAACCGAACCAACGACTTCACCGTCCCCGTCGTGCTCGACTGGGCCATCCGGAACGCCGGCAACTGCGACATCGCCGTGCGCAACAGGACGGACTACGCGTGCCGGAGCGCGCACAGCGAGTGCTTCAACGCCAGCGACGGCCAGGGGTACCGGTGCAGGTGCTCCAAGGGCTACGAGGGCAACCCCTACCTCGACGGTGGATGCAAAGACATCGATGAATGCCAACGCACAAAGGAATACCCATGCTTCGGAAAATGCACAAACACAATCGGAAGCTACACCTGCGAATGCCGACCGGGGACTAGTGGAAATGCAACCCAGGAGAATGGATGCCACCCAACGGACAAGTTCACGTTAGCTCTGAAAGTCGTTACAGGGGTCAGCGTCGGTGTGTTCCTGTTACTGTTCATGTTGTTCTGGCTCTACCTGGGGCTCCAAAAGAGGAAGCTCATCAGAACGAAGCAAAGATTCTTTGAGCAGAACGGTGGCGTGCTTCTCCAGCAACAGATGCGTTCCTATGGTGGCACCAGCGGCGGAGCGGGTGGGTTCAAGATTTTCTCCAAGGAAGAGCTCGAGAAGGCCACCAACAGCTTTGCCGCCGACCGTGTTCTTGGCCGCGGTGGCTACGGCATCGTCTACAAAGGCGTCCTGGAGGACAACATGGTGGTGGCCATCAAGAAGTCAAAGATGATAGAGGAGGCACAGACCAAGGAATTTGCGAAGGAGATGTGCATCCTCTCCCAGATCAACCACAAGAACGTCGTCAAGTTGCTCGGTTGTTGTCTTGAAGTCGAAGTTCCCAAGCTAGTTTATGAGTTTGTCTCAAACGGCACCCTTGACCACTACATCCATGGCGGCACTCTCAACACTGTCATATCCTTGGACTCTCGTCTTCGGATAGCGGCAGAGTCAGCAGAGGCACTCTCCTACATGCATTCTTCAGCCTCACCACCCATCCTCCACGGAGATGTCAAGACGGCAAATATCCTCCTTGATGACAAACTCACCGCAAAAGTTTCAGATTTTGGGACATCAAAACTGGTGCCTAATGATGAGTTCGAGATTGCAACTCTGGTGCAAGGGACATGTGGGTACCTAGACCCTGAGTACCTCATGACATGTCAGCTGACTGACAAGAGTGATGTGTACAGTTTTGGTGTTGTCCTCCTGGAGCTTCTAACCAGGAAGAAGGCACTCTACTTCGGCGGATCAGAGGAAGACAGGAGCCTCGTGTCTTGCTTCATGACGGCTGTGAGAGATGGCCGCCATGAGGAACTTATTGACAGCCAGGTGAGGAATGAGATGACAGAGGAGGTGCTCCAAGAGATTACACACCTCGTGATGCGATGTGTGAGCATGAGTGGTGAGGAACGACCGATGATGAAGGAGGTCGCTGAGAAGCTAGAGATGCTGAGGAGATACCAGCTACACCCCTAG More
Protein seq		MATTSTLHQAVALLAVMLVCLAPVTPASAQPWPGCPDKCGNISISYPFGIGAGCARDRDFQLECDGNTPHFNYLDDREKKLVSLSIADGEVRVFVDAGSNCHDDRFKAISGHYRTPDYGHSIAYRFSTARNRLVVLGCPVLGYLVDADDNYVTGCTSTCRRSQSQEEPTRNVPDQQELPPTEPVFRHLDSTKCQYVFVAEDKWINTTYSYRAFFNRTNDFTVPVVLDWAIRNAGNCDIAVRNRTDYACRSAHSECFNASDGQGYRCRCSKGYEGNPYLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPGTSGNATQENGCHPTDKFTLALKVVTGVSVGVFLLLFMLFWLYLGLQKRKLIRTKQRFFEQNGGVLLQQQMRSYGGTSGGAGGFKIFSKEELEKATNSFAADRVLGRGGYGIVYKGVLEDNMVVAIKKSKMIEEAQTKEFAKEMCILSQINHKNVVKLLGCCLEVEVPKLVYEFVSNGTLDHYIHGGTLNTVISLDSRLRIAAESAEALSYMHSSASPPILHGDVKTANILLDDKLTAKVSDFGTSKLVPNDEFEIATLVQGTCGYLDPEYLMTCQLTDKSDVYSFGVVLLELLTRKKALYFGGSEEDRSLVSCFMTAVRDGRHEELIDSQVRNEMTEEVLQEITHLVMRCVSMSGEERPMMKEVAEKLEMLRRYQLHP
Function		Wall-associated receptor kinase 5 [UniProtKB/Swiss-Prot:Q9LMN7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_02G0564500	OsMH63_02T0564500.1	Chr02	35842935	35845298	-	maker
CDS seq	ATGGCTACCACTAGTACACTGCATCAGGCGGTTGCCTTATTAGCCGTCATGCTCGTCTGCTTGGCGCCGGTGACACCGGCATCGGCTCAGCCATGGCCGGGCTGCCCCGACAAGTGCGGGAACATCAGCATCTCCTACCCCTTCGGCATTGGCGCCGGCTGCGCCCGGGACAGAGACTTCCAGCTCGAGTGCGACGGCAACACTCCGCACTTCAACTACCTGGATGATCGTGAGAAAAAGCTGGTGAGCCTTTCCATCGCCGACGGCGAGGTCCGGGTCTTCGTCGATGCGGGAAGCAACTGCCACGACGACCGTTTCAAAGCAATCAGTGGGCATTACCGCACGCCGGACTACGGCCACAGCATTGCCTACAGGTTCTCCACGGCGAGGAACCGCCTTGTCGTGCTCGGGTGCCCCGTCCTTGGCTACTTGGTTGACGCCGACGATAACTACGTCACTGGCTGCACATCCACGTGCCGGCGGTCGCAGTCGCAGGAGGAACCAACGCGAAACGTCCCCGACCAACAGGAGCTCCCGCCGACGGAACCCGTCTTCCGCCATCTCGACTCAACAAAATGCCAGTATGTGTTCGTGGCGGAGGACAAGTGGATCAACACCACCTACAGCTATCGCGCCTTCTTCAACCGAACCAACGACTTCACCGTCCCCGTCGTGCTCGACTGGGCCATCCGGAACGCCGGCAACTGCGACATCGCCGTGCGCAACAGGACGGACTACGCGTGCCGGAGCGCGCACAGCGAGTGCTTCAACGCCAGCGACGGCCAGGGGTACCGGTGCAGGTGCTCCAAGGGCTACGAGGGCAACCCCTACCTCGACGGTGGATGCAAAGACATCGATGAATGCCAACGCACAAAGGAATACCCATGCTTCGGAAAATGCACAAACACAATCGGAAGCTACACCTGCGAATGCCGACCGGGGACTAGTGGAAATGCAACCCAGGAGAATGGATGCCACCCAACGGACAAGTTCACGTTAGCTCTGAAAGTCGTTACAGGGGTCAGCGTCGGTGTGTTCCTGTTACTGTTCATGTTGTTCTGGCTCTACCTGGGGCTCCAAAAGAGGAAGCTCATCAGAACGAAGCAAAGATTCTTTGAGCAGAACGGTGGCGTGCTTCTCCAGCAACAGATGCGTTCCTATGGTGGCACCAGCGGCGGAGCGGGTGGGTTCAAGATTTTCTCCAAGGAAGAGCTCGAGAAGGCCACCAACAGCTTTGCCGCCGACCGTGTTCTTGGCCGCGGTGGCTACGGCATCGTCTACAAAGGCGTCCTGGAGGACAACATGGTGGTGGCCATCAAGAAGTCAAAGATGATAGAGGAGGCACAGACCAAGGAATTTGCGAAGGAGATGTGCATCCTCTCCCAGATCAACCACAAGAACGTCGTCAAGTTGCTCGGTTGTTGTCTTGAAGTCGAAGTTCCCAAGCTAGTTTATGAGTTTGTCTCAAACGGCACCCTTGACCACTACATCCATGGCGGCACTCTCAACACTGTCATATCCTTGGACTCTCGTCTTCGGATAGCGGCAGAGTCAGCAGAGGCACTCTCCTACATGCATTCTTCAGCCTCACCACCCATCCTCCACGGAGATGTCAAGACGGCAAATATCCTCCTTGATGACAAACTCACCGCAAAAGTTTCAGATTTTGGGACATCAAAACTGGTGCCTAATGATGAGTTCGAGATTGCAACTCTGGTGCAAGGGACATGTGGGTACCTAGACCCTGAGTACCTCATGACATGTCAGCTGACTGACAAGAGTGATGTGTACAGTTTTGGTGTTGTCCTCCTGGAGCTTCTAACCAGGAAGAAGGCACTCTACTTCGGCGGATCAGAGGAAGACAGGAGCCTCGTGTCTTGCTTCATGACGGCTGTGAGAGATGGCCGCCATGAGGAACTTATTGACAGCCAGGTGAGGAATGAGATGACAGAGGAGGTGCTCCAAGAGATTACACACCTCGTGATGCGATGTGTGAGCATGAGTGGTGAGGAACGACCGATGATGAAGGAGGTCGCTGAGAAGCTAGAGATGCTGAGGAGATACCAGCTACACCCCTAG More
Protein seq	MATTSTLHQAVALLAVMLVCLAPVTPASAQPWPGCPDKCGNISISYPFGIGAGCARDRDFQLECDGNTPHFNYLDDREKKLVSLSIADGEVRVFVDAGSNCHDDRFKAISGHYRTPDYGHSIAYRFSTARNRLVVLGCPVLGYLVDADDNYVTGCTSTCRRSQSQEEPTRNVPDQQELPPTEPVFRHLDSTKCQYVFVAEDKWINTTYSYRAFFNRTNDFTVPVVLDWAIRNAGNCDIAVRNRTDYACRSAHSECFNASDGQGYRCRCSKGYEGNPYLDGGCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPGTSGNATQENGCHPTDKFTLALKVVTGVSVGVFLLLFMLFWLYLGLQKRKLIRTKQRFFEQNGGVLLQQQMRSYGGTSGGAGGFKIFSKEELEKATNSFAADRVLGRGGYGIVYKGVLEDNMVVAIKKSKMIEEAQTKEFAKEMCILSQINHKNVVKLLGCCLEVEVPKLVYEFVSNGTLDHYIHGGTLNTVISLDSRLRIAAESAEALSYMHSSASPPILHGDVKTANILLDDKLTAKVSDFGTSKLVPNDEFEIATLVQGTCGYLDPEYLMTCQLTDKSDVYSFGVVLLELLTRKKALYFGGSEEDRSLVSCFMTAVRDGRHEELIDSQVRNEMTEEVLQEITHLVMRCVSMSGEERPMMKEVAEKLEMLRRYQLHP More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	1.666801	11.6920945	2.845836

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0807200	RBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g56350	RBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0807200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0037900	RBH	0.000000	1.117125	0.978649
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0038240	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0037810	RBH	0.000000	0.000000	1.000704
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0037400	RBH	0.053108	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0037610	RBH	0.457332	2.967170	2.409071
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0565000	SBH	0.096723	0.396715	0.086739
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0037300	RBH	0.038682	0.386035	0.225111
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0595400	RBH	0.3729745	11.9574075	0.8325785
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0037580	RBH	0.014462	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0037510	RBH	0.027594	1.515061	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0037630	RBH	0.000000	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0037610	RBH	0.062245	0.000000	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0037270	RBH	0.012833	2.010251	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G037860	RBH	0.000000	0.000000	0.581043
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0037690	RBH	0.000000	0.000000	0.428878

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.