Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_02G037860		OGI:02097180 \| 15/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr02:35835940-35839844		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		WAK19, OsWAK19
DNA seq		CTAGGATCTGCAAGCTGGATTTTCAGGATCATAGTCATGGTGGTGTCTGAACTTCTGATCCACATTTCTCTGTTCCATGTCAAGCAAGCTCTGCTTCTCCTCCGGATTGGCATCACCTTTATCCCAGGGGTGTAGCTCGTATCTCCTCAGCATCTCCAGCTTCTCAGCGACCTCCTTCATCATCGGTCGTTCCTCACCACTCATGCTCACACATCGCATCACGAGGTGTGTAATCTCTTGGAGCACCTCCTCTGTCATCTCATTCCTCACCTGGCTGTCAATAAGTTCCTCATGGCGGCCATCTCTCACAGCCGTCATGAAGCAAGACACGAGGCTCCTGTCTTCCTCTGATCCGCCGAAGTAGAGTGCCTTCTTCCTGGTTAGAAGCTCCAGGAGGACAACACCAAAACTGTACACATCACTCTTGTCAGTCAGCTGACATGTCATGAGGTACTCAGGGTCTAGGTACCCACATGTCCCTTGCACCAGAGTTGCAATCTCGAACTCATCATTAGGCACCAGTTTTGATGTCCCAAAATCTGAAACTTTTGCGGTGAGTTTGTCATCAAGGAGGATATTTGCCGTCTTGACATCTCCATGGAGGATGGGTGGTGAGGCTGAAGAATGCATGTAGGAGAGTGCCTCTGCTGACTCTGCCGCTATCCGAAGACGAGAGTCCAAGGATATGACAGTGTTGAGAGTGCCGCCATGGATGTAGTGGTCGAGGGTGCCGTTTGAGACAAACTCATAAACTAGCATGGGAACTTCGACTTCAAGACAACAACCGAGCAACTTGACGACGTTCTTGTGGTTGATCTGGGAGAGGATGCACATCTCCTTCGCAAATTCCTTGGTCTGTGCCTCCTCTATCATCTTTGACTTCTTGATGGCCACCACCATGTTGTCCTCCAGGACGCCTTTGTAGACGATGCCGTAGCCACCGCGGCCAAGAACACGGTCGGCGGCAAAGCTGTTGGTGGCCTTCTCGAGCTCTTCCTTGGAGAAAATCTTGAACCCACCCGCTCCGCCGCTGCTGCCACCATAGGAACGCATCTGTTGCTGGAGAAGCACGCCACCGTTCTGCTCAAAGAATCTTTGTTTCGTTCTGATGAGCTTCCTCTTTTGGAGCCCCAGGTAGAGCCAGAACAACATGAACAGTAACAGGAACACACCGACGCTGACCCCTGAACATGGTATGCCAATGATATTCATTAGTTCCCGACAAGAAAATAAGTGCATTAATAATGTTGCTTGATAACCGGCCGATTGAATACCTGTAACGACTTTCAGAGCTAACGTGAACTTGTCCGTTGGGTGGCATCCATTCTCCTGGGTTGCATTTCCACTAGTCCCCGGTCGGCATTCGCAGGTGTAGCTTCCGATTGTGTTTGTGCATTTTCCGAAGCATGGGTATTCCTTTGTGCGTTGGCATTCATCGATGTCTAGCGTTGGCAAAGCAAACATATTCGATCATCACTTTTTTTTTGTCAGAAAGATTATTATTTGCCGAGGATATCGGTGTTTTAGGCACCCACCTTTGCATGATCCACCATCATCGAGGTAGGGGTTTCCCTCGTAGCCCTGTAAACAGTTGCATCGGTACCCCTGGCCGTCCGGGGTGGTGAAGCACTCGCTGTTGGCGCTCCGGCACGCGTAGTCCGCCTTGTTGCGCATGGCGATGTCGCAGTTGCCGACGTTCCGGATGGCCCAGTCGAGCACGACGGGCACGGCGAAGTCGTCCGTGTGGTTGAAGTAGTCGCGATAGTTGTTCGTGGTGTTGATCCACTTTTCCTCCGCCAGGAACACATACTGGCAAGTAGTCGAGTCGAGATCAACATTGTAGATTGGTTTGGCAGGTTCCTTTGGCGGGGGCTTCATTTGGTAGGGGACATTGTCATCTTTCACTGACTTCTCCAATTTGAGCATGTAAGGCTTGTAGAAGTTGAGAGAGCGGGGTATGGTGTGCTGGCAGCACCCCGACGATTCATCGGTGCAGGGGCGGGCCCACTATGTATTCATGGGTATTCAGATGTATACCCAAGATTTTTGGAAAAAAAATAGGTATATATACTATATAGTTCATATAGGTATTAAAAAAATAAAAAGAAAGCTTAAACTGCTTATATTGGGCATTGTTTCCCCATTTCTTCTCTATTGGGCCTAAATTTTCCACTCCCCTCCCTCTTTCCTCTCTACCTGTGGTCTAATTGGGCCACATATCAGCCCATTTGCAATTTTCCCCCAATTCCCCACCCGCCTGGCGCCTTGGCCACCCAAACCTGCAAACCCTAGACCACAACACAGCAGTACAGCACGGCGACGGGAGGAGGCGTGCGGCGGCGTGACGTGCGGCGGCCGGCGGGGGCTGCGTGCAGCGTGCGGCGGCCGGCGGCGGGAGCCGTGGCGGCGTGCGGCGCGGCCGCGGCGTGCAATGGCGCGGGCGCGGCGCCGGCGCGGCGGCGGCGACCGGTGAGGCGGTGAGCCGCCAAGGCCAAGGCGCCAAGCCCGTGACCGGCAGGCGCACCGTGACCGACGGGCGACGGCGTGCCGCGTGCGGCAGCCGGCACGGCAGCCTGCAGGGGCCCAGGAGGCAGCCAGGCAGGAGGCTGCTCCAGGCCGTCAGCCGAGCAGGAGCAGGCGCTGCACAGCTGCAGCCTGCAGGTCGGCGTCAGCCGTTCCACGCTGAGGCCCGAGGCAGCCGGCGGCTGCGCGCTGCCGCTGCGGCCGTGCGGCATCCTGCTCGCCGGCGACTGCCTGACCTGCAAATTCCGGACAAGCACATTAGCACAGTGAGTGACTAAACTCCGGACAACGGGACAAGCACAAAAATTCATTGATTTAGACATTTAGTATTTTAGTGTAGTTGCTTGCTTGCTTGATTTAGACATTTAGTTTGTAGGATTGTAGTTGACTAGTTGCCTATTTGAGTATTTGAGTAATTGAGTATATTGGACACTGGACAGTAGTTCATAGTTCATACCATATTAGCAAATTTGTAGTATTTGAATGATTGTTTCGTTACATTCATTGAAAGAGAATTCTTTTTGCAAGCTAAGGACAAGGACATCATCAATTATTTCCAAAATATCAAGCGTCGAAAAGTTAATATCTAAATTGTAAGTTTTCTTCCTAACTTATTATTTTCTATCATTTTTGTATTCCATATTTTGACACTTTGATATGTTTGGTATTAGTATTTCTATAAGTTAAACAATTTCTAGTGATGATCAATTCTATCACTGTGTGAACTAATGATCAATTTTATGTTCTATACGCTCTAAATTATAATTATTAGTGTATCATAATATACAAGCCCATTTTTTGGCTTTTTGGTGTATGGACATTTTTTTACCCCTTCCCATTTCGAATACCCAAGTTTAAAAAGCTGGGCCCGCCACTGCATCGGTGCACCGGCCAGGCAAGTCACCAGCACGCTGCGACTGCCGGCACATGGATGTGCAGCCGGTGACGTATTTTCCCTCGTCGTCAACCAAGTAGCCATGGACGGGGCAGCCGAGGACGACAAGGCGGTTCTTCTCTGCGGAGAACCGGTAGGTGGTGCTGCCGCGGTTGCCCGGCGTTCTGTACTCCCCACTGATGGTTTTGAAGCGGTAGTCGTGGCAATTGCTTCTCGCAGTGACGCGGACCCGGAGCTCGCCGTCGGCGAGGGAAAGGCTATCCACCTCTTGCGTATCCAGGTAGAGGCGCGGAGTGGAGTAGGTGTGGTTGCACTCGAGTTGGAAGCTGGAGTCGCGGGCGCAGTTGACGCCAACGCCGAAGGGGTAGGGTATATTTCTGATGTTTCCGCAATGATCGGGGCAGCCCGCCGACGCTGGTGTCACCGGCGGCAGGCAGATGATCAAGACGGCTAAGGCAACCGCCTGATGCATTCTCAGTCTAGCCAT More
CDS seq		ATGGCTAGACTGAGAATGCATCAGGCGGTTGCCTTAGCCGTCTTGATCATCTGCCTGCCGCCGGTGACACCAGCGTCGGCGGGCTGCCCCGATCATTGCGGAAACATCAGAAATATACCCTACCCCTTCGGCGTTGGCGTCAACTGCGCCCGCGACTCCAGCTTCCAACTCGAGTGCAACCACACCTACTCCACTCCGCGCCTCTACCTGGATACGCAAGAGGTGGATAGCCTTTCCCTCGCCGACGGCGAGCTCCGGGTCCGCGTCACTGCGAGAAGCAATTGCCACGACTACCGCTTCAAAACCATCAGTGGGGAGTACAGAACGCCGGGCAACCGCGGCAGCACCACCTACCGGTTCTCCGCAGAGAAGAACCGCCTTGTCGTCCTCGGCTGCCCCGTCCATGGCTACTTGGTTGACGACGAGGGAAAATACTCAGTGAAAGATGACAATGTCCCCTACCAAATGAAGCCCCCGCCAAAGGAACCTGCCAAACCAATCTACAATGTTGATCTCGACTCGACTACTTGCCAGTATGTGTTCCTGGCGGAGGAAAAGTGGATCAACACCACGAACAACTATCGCGACTACTTCAACCACACGGACGACTTCGCCGTGCCCGTCGTGCTCGACTGGGCCATCCGGAACGTCGGCAACTGCGACATCGCCATGCGCAACAAGGCGGACTACGCGTGCCGGAGCGCCAACAGCGAGTGCTTCACCACCCCGGACGGCCAGGGGTACCGATGCAACTGTTTACAGGGCTACGAGGGAAACCCCTACCTCGATGATGGTGGATCATGCAAAGACATCGATGAATGCCAACGCACAAAGGAATACCCATGCTTCGGAAAATGCACAAACACAATCGGAAGCTACACCTGCGAATGCCGACCGGGGACTAGTGGAAATGCAACCCAGGAGAATGGATGCCACCCAACGGACAAGTTCACGTTAGCTCTGAAAGTCGTTACAGGGGTCAGCGTCGGTGTGTTCCTGTTACTGTTCATGTTGTTCTGGCTCTACCTGGGGCTCCAAAAGAGGAAGCTCATCAGAACGAAACAAAGATTCTTTGAGCAGAACGGTGGCGTGCTTCTCCAGCAACAGATGCGTTCCTATGGTGGCAGCAGCGGCGGAGCGGGTGGGTTCAAGATTTTCTCCAAGGAAGAGCTCGAGAAGGCCACCAACAGCTTTGCCGCCGACCGTGTTCTTGGCCGCGGTGGCTACGGCATCGTCTACAAAGGCGTCCTGGAGGACAACATGGTGGTGGCCATCAAGAAGTCAAAGATGATAGAGGAGGCACAGACCAAGGAATTTGCGAAGGAGATGTGCATCCTCTCCCAGATCAACCACAAGAACGTCGTCAAGTTGCTCGGTTGTTGTCTTGAAGTCGAAGTTCCCATGCTAGTTTATGAGTTTGTCTCAAACGGCACCCTCGACCACTACATCCATGGCGGCACTCTCAACACTGTCATATCCTTGGACTCTCGTCTTCGGATAGCGGCAGAGTCAGCAGAGGCACTCTCCTACATGCATTCTTCAGCCTCACCACCCATCCTCCATGGAGATGTCAAGACGGCAAATATCCTCCTTGATGACAAACTCACCGCAAAAGTTTCAGATTTTGGGACATCAAAACTGGTGCCTAATGATGAGTTCGAGATTGCAACTCTGGTGCAAGGGACATGTGGGTACCTAGACCCTGAGTACCTCATGACATGTCAGCTGACTGACAAGAGTGATGTGTACAGTTTTGGTGTTGTCCTCCTGGAGCTTCTAACCAGGAAGAAGGCACTCTACTTCGGCGGATCAGAGGAAGACAGGAGCCTCGTGTCTTGCTTCATGACGGCTGTGAGAGATGGCCGCCATGAGGAACTTATTGACAGCCAGGTGAGGAATGAGATGACAGAGGAGGTGCTCCAAGAGATTACACACCTCGTGATGCGATGTGTGAGCATGAGTGGTGAGGAACGACCGATGATGAAGGAGGTCGCTGAGAAGCTGGAGATGCTGAGGAGATACGAGCTACACCCCTGGGATAAAGGTGATGCCAATCCGGAGGAGAAGCAGAGCTTGCTTGACATGGAACAGAGAAATGTGGATCAGAAGTTCAGACACCACCATGACTATGATCCTGAAAATCCAGCTTGCAGATCCTAG More
Protein seq		MARLRMHQAVALAVLIICLPPVTPASAGCPDHCGNIRNIPYPFGVGVNCARDSSFQLECNHTYSTPRLYLDTQEVDSLSLADGELRVRVTARSNCHDYRFKTISGEYRTPGNRGSTTYRFSAEKNRLVVLGCPVHGYLVDDEGKYSVKDDNVPYQMKPPPKEPAKPIYNVDLDSTTCQYVFLAEEKWINTTNNYRDYFNHTDDFAVPVVLDWAIRNVGNCDIAMRNKADYACRSANSECFTTPDGQGYRCNCLQGYEGNPYLDDGGSCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPGTSGNATQENGCHPTDKFTLALKVVTGVSVGVFLLLFMLFWLYLGLQKRKLIRTKQRFFEQNGGVLLQQQMRSYGGSSGGAGGFKIFSKEELEKATNSFAADRVLGRGGYGIVYKGVLEDNMVVAIKKSKMIEEAQTKEFAKEMCILSQINHKNVVKLLGCCLEVEVPMLVYEFVSNGTLDHYIHGGTLNTVISLDSRLRIAAESAEALSYMHSSASPPILHGDVKTANILLDDKLTAKVSDFGTSKLVPNDEFEIATLVQGTCGYLDPEYLMTCQLTDKSDVYSFGVVLLELLTRKKALYFGGSEEDRSLVSCFMTAVRDGRHEELIDSQVRNEMTEEVLQEITHLVMRCVSMSGEERPMMKEVAEKLEMLRRYELHPWDKGDANPEEKQSLLDMEQRNVDQKFRHHHDYDPENPACRS
Function		Wall-associated receptor kinase 5 [UniProtKB/Swiss-Prot:Q9LMN7]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_02G037860	OsN22_02G037860_01	Chr02	35835940	35839844	-	NAM
CDS seq	ATGGCTAGACTGAGAATGCATCAGGCGGTTGCCTTAGCCGTCTTGATCATCTGCCTGCCGCCGGTGACACCAGCGTCGGCGGGCTGCCCCGATCATTGCGGAAACATCAGAAATATACCCTACCCCTTCGGCGTTGGCGTCAACTGCGCCCGCGACTCCAGCTTCCAACTCGAGTGCAACCACACCTACTCCACTCCGCGCCTCTACCTGGATACGCAAGAGGTGGATAGCCTTTCCCTCGCCGACGGCGAGCTCCGGGTCCGCGTCACTGCGAGAAGCAATTGCCACGACTACCGCTTCAAAACCATCAGTGGGGAGTACAGAACGCCGGGCAACCGCGGCAGCACCACCTACCGGTTCTCCGCAGAGAAGAACCGCCTTGTCGTCCTCGGCTGCCCCGTCCATGGCTACTTGGTTGACGACGAGGGAAAATACTCAGTGAAAGATGACAATGTCCCCTACCAAATGAAGCCCCCGCCAAAGGAACCTGCCAAACCAATCTACAATGTTGATCTCGACTCGACTACTTGCCAGTATGTGTTCCTGGCGGAGGAAAAGTGGATCAACACCACGAACAACTATCGCGACTACTTCAACCACACGGACGACTTCGCCGTGCCCGTCGTGCTCGACTGGGCCATCCGGAACGTCGGCAACTGCGACATCGCCATGCGCAACAAGGCGGACTACGCGTGCCGGAGCGCCAACAGCGAGTGCTTCACCACCCCGGACGGCCAGGGGTACCGATGCAACTGTTTACAGGGCTACGAGGGAAACCCCTACCTCGATGATGGTGGATCATGCAAAGACATCGATGAATGCCAACGCACAAAGGAATACCCATGCTTCGGAAAATGCACAAACACAATCGGAAGCTACACCTGCGAATGCCGACCGGGGACTAGTGGAAATGCAACCCAGGAGAATGGATGCCACCCAACGGACAAGTTCACGTTAGCTCTGAAAGTCGTTACAGGGGTCAGCGTCGGTGTGTTCCTGTTACTGTTCATGTTGTTCTGGCTCTACCTGGGGCTCCAAAAGAGGAAGCTCATCAGAACGAAACAAAGATTCTTTGAGCAGAACGGTGGCGTGCTTCTCCAGCAACAGATGCGTTCCTATGGTGGCAGCAGCGGCGGAGCGGGTGGGTTCAAGATTTTCTCCAAGGAAGAGCTCGAGAAGGCCACCAACAGCTTTGCCGCCGACCGTGTTCTTGGCCGCGGTGGCTACGGCATCGTCTACAAAGGCGTCCTGGAGGACAACATGGTGGTGGCCATCAAGAAGTCAAAGATGATAGAGGAGGCACAGACCAAGGAATTTGCGAAGGAGATGTGCATCCTCTCCCAGATCAACCACAAGAACGTCGTCAAGTTGCTCGGTTGTTGTCTTGAAGTCGAAGTTCCCATGCTAGTTTATGAGTTTGTCTCAAACGGCACCCTCGACCACTACATCCATGGCGGCACTCTCAACACTGTCATATCCTTGGACTCTCGTCTTCGGATAGCGGCAGAGTCAGCAGAGGCACTCTCCTACATGCATTCTTCAGCCTCACCACCCATCCTCCATGGAGATGTCAAGACGGCAAATATCCTCCTTGATGACAAACTCACCGCAAAAGTTTCAGATTTTGGGACATCAAAACTGGTGCCTAATGATGAGTTCGAGATTGCAACTCTGGTGCAAGGGACATGTGGGTACCTAGACCCTGAGTACCTCATGACATGTCAGCTGACTGACAAGAGTGATGTGTACAGTTTTGGTGTTGTCCTCCTGGAGCTTCTAACCAGGAAGAAGGCACTCTACTTCGGCGGATCAGAGGAAGACAGGAGCCTCGTGTCTTGCTTCATGACGGCTGTGAGAGATGGCCGCCATGAGGAACTTATTGACAGCCAGGTGAGGAATGAGATGACAGAGGAGGTGCTCCAAGAGATTACACACCTCGTGATGCGATGTGTGAGCATGAGTGGTGAGGAACGACCGATGATGAAGGAGGTCGCTGAGAAGCTGGAGATGCTGAGGAGATACGAGCTACACCCCTGGGATAAAGGTGATGCCAATCCGGAGGAGAAGCAGAGCTTGCTTGACATGGAACAGAGAAATGTGGATCAGAAGTTCAGACACCACCATGACTATGATCCTGAAAATCCAGCTTGCAGATCCTAG More
Protein seq	MARLRMHQAVALAVLIICLPPVTPASAGCPDHCGNIRNIPYPFGVGVNCARDSSFQLECNHTYSTPRLYLDTQEVDSLSLADGELRVRVTARSNCHDYRFKTISGEYRTPGNRGSTTYRFSAEKNRLVVLGCPVHGYLVDDEGKYSVKDDNVPYQMKPPPKEPAKPIYNVDLDSTTCQYVFLAEEKWINTTNNYRDYFNHTDDFAVPVVLDWAIRNVGNCDIAMRNKADYACRSANSECFTTPDGQGYRCNCLQGYEGNPYLDDGGSCKDIDECQRTKEYPCFGKCTNTIGSYTCECRPGTSGNATQENGCHPTDKFTLALKVVTGVSVGVFLLLFMLFWLYLGLQKRKLIRTKQRFFEQNGGVLLQQQMRSYGGSSGGAGGFKIFSKEELEKATNSFAADRVLGRGGYGIVYKGVLEDNMVVAIKKSKMIEEAQTKEFAKEMCILSQINHKNVVKLLGCCLEVEVPMLVYEFVSNGTLDHYIHGGTLNTVISLDSRLRIAAESAEALSYMHSSASPPILHGDVKTANILLDDKLTAKVSDFGTSKLVPNDEFEIATLVQGTCGYLDPEYLMTCQLTDKSDVYSFGVVLLELLTRKKALYFGGSEEDRSLVSCFMTAVRDGRHEELIDSQVRNEMTEEVLQEITHLVMRCVSMSGEERPMMKEVAEKLEMLRRYELHPWDKGDANPEEKQSLLDMEQRNVDQKFRHHHDYDPENPACRS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.000000	0.581043

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0807200	RBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g56380	SBH	0.0	0.0	0.053127
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0807200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0037900	SBH	0.000000	1.117125	0.978649
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0037940	RBH	0.000000	0.000000	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0037810	RBH	0.000000	0.000000	1.000704
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0037400	RBH	0.053108	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0037610	RBH	0.457332	2.967170	2.409071
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_02G0564500	RBH	1.666801	11.6920945	2.845836
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0037300	RBH	0.038682	0.386035	0.225111
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0595400	SBH	0.3729745	11.9574075	0.8325785
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0037580	SBH	0.014462	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0037510	RBH	0.027594	1.515061	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0037630	RBH	0.000000	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0037610	RBH	0.062245	0.000000	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0037270	RBH	0.012833	2.010251	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0037690	RBH	0.000000	0.000000	0.428878

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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