Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_02G0409600		OGI:02071470 \| 16/16			Minghui 63 \| MH63RS3 \| HZAU			Chr02:26520330-26524795		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		GA2OX9, OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35
DNA seq		CCCTTGGAATGCTCTTCTATAGACTATAGTGCAAAGCTATGTATAAAATGCAAGTACATCAAATTTCTTACAAATCCAAAGAAATACTAGTTATTCATCAACATACATACAGCACGTTTAAGAAACATCATAATTCAAACCAAAGGACAAGGGATCGAAGGCCGTACATAAACTGTACATGGATCCCTTATCTTATTTCCTACGTACATATATACCGGCAATCTCCTACCAGTACTTGTACACCGTCAAACTAAGCTACAATAAACTAATTAATTAATTAATTAATGTACTGCACTCTTAGTCATTAATAATTGTACATTTACTGATGATACACAGAACGGAACTGAAACTGGCCGGCCACTGAATTTGTGTGCGCCTCATACGAGGAAATTACTGAGGCCAGTCTTCTTCCCCGTCTTCTTGACGTCTTCCTGCACCCTTCGCCTGTACTCCCCGAAGGTGAACGCCTTGTAAGGGGAAGGCTCTCTGCACGTGCCGATGGGCGAGTCGTACGACGGGCAGAGGAAGTAGGCGACGGAGTATCTCTCCGTCGTCGCGTTCGTCATCACCCTGTGCTCCACGCTCTTGTACCTGTTGTTGCTCCACGCCTTCAAAATAGAAGTAGAGTCGGAAAAACGTCAGGAATTGAATTGAACCGCCCTAATTTGGTTCAACGTGGTAGAGTACAAGTTTAGTACGGCCTCGCATACACTGTCCACTGATGCTTAATTTAATGATTCACATTTGTATGTTTCATGAAAAAAAAATATATAGATTTTTTTTAAAAAAATAAGTTTACAATGGTTAATACTTAGTAATTAATCATGCTTTAATCATCCACTACATTTTCGTGCTGTAATAAGCTTAAGCTTATCACATTCAAATGGTGCCTAAACTGTTATAATTTGGTCCTCCCAAGATGTAAGTATATGCTTTAGATTTATGTACTATTTTCTGACTAACGTAGATATTTTCTTAGAACGTGTTGTTGGGCATAGGCATAGATTGAGAGATTTCTTTTAGACTCTAGTTATAGCACGATATAGTAGTACAATAGTAGTAGTACTATGTTATCGTGACCGATCAAGTTCCCTAGCAAAAGTCGCAAATGTACCATGTGAGTGTAACTGACAAGTCGATCTTTCCATTCTACTAGCCCTTTTGCACGATGTTTTTCTGTCCCTTGATCATAGCGGAATCCGCAGCCTTTTTTTTTTCGCTAGCGGCGGTACAGCGATACACGCAGGCAAGGCTGCTGATAGATAGGCACGACATGCCCACAAGCACAAGTACGCAAAGCGTGACGCTGCAACGTCCGCCTTTTGGAGAGCCGGAGGCCCGGAATATGTTCACGGAATCTGTACTTTTTCACGCAGACAGACAAACCACCTACCATAGGCAGATGCAGGCTTTGACTCTACAGGTTGGAAAGCATTGCCGGCCGCAGCCAGCCAGCCAGCCAGCCGGCCGGCCAGCCACGAGAGCCTGTATTGTACCCGCCTTGTCCAAAATAATTATGCACATTTTTTTCTCCTCTCCCGTGCAAAGCTTCGTAGAATATGGAGTAGTTGTTGATTGGGTATATAGCACTATATATAGCACGTGTGGTATGCATGATTAGGTGTAACAGCAAGTTTTATAGTAGGGATGATTGTCACCCTTAATATTATCCACATCATCAACTAATTAATTATTAGGAGGTAAAATATACTACACATTATCTCTAATATACTAGCTCCAATACAAGAAAACTATTTGTTTCATGCACTTTTCATCCAATCAGCGCCATATTTTTCTCTTTATGAGGGGGTGACTCATCCTCTTTTTCTCTTTTGTTTTCTCTCTTCCATCTTAGTACCATTATGCATATATGGTATTTAGGGATTTGTGTTGAGATGTTTATACAACGTTGGAGTTAATGGGTGTACCTGAAAAAGGTCTCCGATGTTGACGATGAGGGCGCCGGGGATGGGCTTGACGGCGACCCAGCGGGAGCCCTTCATGAGCTGCAGGCCGCCGACGTGGTCCTGGCAGAGCACGGTGAGGAAGTCGCTGTCGGTGTGCGGGACCAGGCCGAAGGCGTCGTCCGGTGGGAAGGGGCACGGCGGGTAGCGGTTCAGCCGGAGGAAGCACGTCGCGTCGTCGCACCCCTCCGGGAATCGCTCGCCGGCGGCGTGGCCCAGGAGGCTCTCCGCCAGCACGCGCGCCAGCGCCCTGGCCAGCCTCGACATCGCGTCCGCCACCTCCCGCGTCACGTCCCTGCGCCGCCCCCACACGGCAACTAGATGGTGTTAGTTGCGAAATCAGTGTACTGTGTTGTTTTGCCGACCTGAAACCCTCTCTATTCTAATATATGTTAGGTCCTGGAATATTTCTTTTGTTGGATCAATGTAAACATAAAAAAAGGTGGATTAACGGTGGTAACAAATGGTTTTATATTTCATATGTACACATGTTTCCCCTCCGTACTGTACAAATTGTTTACCCATAACTAAAGAGCTCCTGAAAAGCGGACCGTATTTTTGTGTTGTTGACTTTTGATAACTTCCTACAACTAAAGTACCAGTTTAATTAGAGTGTACCACGTGTTTCAATTTGTAAGGATTAAATCATAGTGATCATAAATAATCAAATGTTACATATAGGTGAGTATGTTTTTAATACAAAACTAATGTTTTTTAATCTTTAGACGTACGATAAAGAGATAAACTCGTCGACTCATGGGTGGGTAAGTGCGTTGTATATATATGGATACGGTGCTAGTGGTGCGTGCACGCATATTTTTACGTAATTGAAGAAAAATAAAGTGTAACTCATGCTGTCTCTTAAAAAGGTAAGTGTTCATGGTACTTGGATGACCATTTTGCATCCCGCTTTTTAAAAAAGAGAAAAAAACTAAGCAGAAGCACAGCTTTATTATCTTTTTTTACATCATTAGATGCGAATTAGAGAGAACCCCAGCAGCTCTCGAACTACGTACTTCATGATCAAGACACATCATTCGAAAGAGTGATTTTGCTAGGCGAGCTTATTATTAACCACACCGTAATTAAAGTGATATTTCCTTTTCACCCGGTTCTTATTCCGCCGCACTAATTAATCCACCATGTCGCAATCATATAACCCGATGTACGTCCCGATCGATCGAATAAATTCATTTAGTTACGCGAGACCAAAGAACACTTTTCATCATTATTCTTCTGTACTTTGCAAATACCGGTCAGCTTAATTAGCGCTATAGATAGAACATGGAAGAATCTGAATCATGCGTGCACTACACACGTCGAAGTGTCGACTGACTGACTGACTGACTGACTGACGAGCGAGCTAACTAGCACGTGTAATTCCTCCGTCCTATAAAAAAATAAAATTTTAATTTTAGATATATACTCTCTTCGTTCATGTAAATTTTTAATTCGATGTAAAGAAAGTCGTTTAAAATAATGTTTAAGTCAAACCTTAAGAATATAAATTATGAATAACTTAAGTTGTTAAGTTGTTGAGTTTGAAAATGTAAAATTATATGAATAGATTTGTCTTGAAAAATATTTTAATTAAAATATACAGACATCACTTTTCAATAAATAACTTTTATAGAAATAAGAAATCAAAATTATGTTTTAGAGACCATGTCGCTTGTTTAAAACAACTTTCTTTACGAGTACGGAGGGAGTAGCTATAAGTTTATTTTTTATAGCATGATGGTGTATACACGTGGAGTATGTACGTACCTGAGGGAGGTGAGGTCGCCGTAGTTGCAGGATTTGCCGGAGATGCCGGCGAGCGGGAGGTGGAAGGCCTCCGACCAGGAGAGCTGGCGGAGCGAGGTGGCGGTCGGGGTGCCCCAGCGGTAGGAGTCGTTGAGGAGGCCGGCGCTGGACTTGGCCTCGAACGGGAGGCGGAACAGCCGCGCCTGCTCCCGGCGCATCGCCTCCAGGAGCTCCTGCGCGACGCCGTGGTTCACCACCTGGAAGAACCCCCACTCCGCGGCCGCCGCCGCGATGGCCGCCGCGCAGGCCGCCCTCTCCTCGGCTTGATGCTGCTGCCCCACGGCGGCGGCGGCGGCGGCGCCGGTCGGCGCCGTCAGGCAACCGACGTCGATCATCGGGAGCTCGCACTCCGACACGGGCTGCGGCGTCGTGGTCACCTTCGTGCACGCGTCGTCGTCGTCGTCCCCGCCGAGGCGGAGCAGCGCGTAGTAGCTGTCCGCCAGCGGCGGCTCGGCCGCGCAATCCGCGATGGCCGGCATGGCTGTCTGGGACGTTGTTACTACCGATCGAGCTAGCACACACAGCTTAGCTATAAGCTAGCTGTAGTGTGTTTGGTTGAGCGCGAGCTTGGGGGTGGATGCGAGGAGGAGCAAGGCAAGCTAGGCTTATATAGAGAGCTCGCGGGAGTTGGCCGGTGGTATCCCGTTGGCGAGGCGACCTCGAGGGGGCTTGGTTGGTTGGTTGGTTGCGGGTTGC More
CDS seq		ATGCCGGCCATCGCGGATTGCGCGGCCGAGCCGCCGCTGGCGGACAGCTACTACGCGCTGCTCCGCCTCGGCGGGGACGACGACGACGACGCGTGCACGAAGGTGACCACGACGCCGCAGCCCGTGTCGGAGTGCGAGCTCCCGATGATCGACGTCGGTTGCCTGACGGCGCCGACCGGCGCCGCCGCCGCCGCCGCCGTGGGGCAGCAGCATCAAGCCGAGGAGAGGGCGGCCTGCGCGGCGGCCATCGCGGCGGCGGCCGCGGAGTGGGGGTTCTTCCAGGTGGTGAACCACGGCGTCGCGCAGGAGCTCCTGGAGGCGATGCGCCGGGAGCAGGCGCGGCTGTTCCGCCTCCCGTTCGAGGCCAAGTCCAGCGCCGGCCTCCTCAACGACTCCTACCGCTGGGGCACCCCGACCGCCACCTCGCTCCGCCAGCTCTCCTGGTCGGAGGCCTTCCACCTCCCGCTCGCCGGCATCTCCGGCAAATCCTGCAACTACGGCGACCTCACCTCCCTCAGGGACGTGACGCGGGAGGTGGCGGACGCGATGTCGAGGCTGGCCAGGGCGCTGGCGCGCGTGCTGGCGGAGAGCCTCCTGGGCCACGCCGCCGGCGAGCGATTCCCGGAGGGGTGCGACGACGCGACGTGCTTCCTCCGGCTGAACCGCTACCCGCCGTGCCCCTTCCCACCGGACGACGCCTTCGGCCTGGTCCCGCACACCGACAGCGACTTCCTCACCGTGCTCTGCCAGGACCACGTCGGCGGCCTGCAGCTCATGAAGGGCTCCCGCTGGGTCGCCGTCAAGCCCATCCCCGGCGCCCTCATCGTCAACATCGGAGACCTTTTTCAGGCGTGGAGCAACAACAGGTACAAGAGCGTGGAGCACAGGGTGATGACGAACGCGACGACGGAGAGATACTCCGTCGCCTACTTCCTCTGCCCGTCGTACGACTCGCCCATCGGCACGTGCAGAGAGCCTTCCCCTTACAAGGCGTTCACCTTCGGGGAGTACAGGCGAAGGGTGCAGGAAGACGTCAAGAAGACGGGGAAGAAGACTGGCCTCAGTAATTTCCTCGTATGA More
Protein seq		MPAIADCAAEPPLADSYYALLRLGGDDDDDACTKVTTTPQPVSECELPMIDVGCLTAPTGAAAAAAVGQQHQAEERAACAAAIAAAAAEWGFFQVVNHGVAQELLEAMRREQARLFRLPFEAKSSAGLLNDSYRWGTPTATSLRQLSWSEAFHLPLAGISGKSCNYGDLTSLRDVTREVADAMSRLARALARVLAESLLGHAAGERFPEGCDDATCFLRLNRYPPCPFPPDDAFGLVPHTDSDFLTVLCQDHVGGLQLMKGSRWVAVKPIPGALIVNIGDLFQAWSNNRYKSVEHRVMTNATTERYSVAYFLCPSYDSPIGTCREPSPYKAFTFGEYRRRVQEDVKKTGKKTGLSNFLV
Function		Gibberellin 2-beta-dioxygenase 6 [UniProtKB/Swiss-Prot:Q7XP65]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_02G0409600	OsMH63_02T0409600.1	Chr02	26521547	26524795	-	maker
CDS seq	ATGCCGGCCATCGCGGATTGCGCGGCCGAGCCGCCGCTGGCGGACAGCTACTACGCGCTGCTCCGCCTCGGCGGGGACGACGACGACGACGCGTGCACGAAGGTGACCACGACGCCGCAGCCCGTGTCGGAGTGCGAGCTCCCGATGATCGACGTCGGTTGCCTGACGGCGCCGACCGGCGCCGCCGCCGCCGCCGCCGTGGGGCAGCAGCATCAAGCCGAGGAGAGGGCGGCCTGCGCGGCGGCCATCGCGGCGGCGGCCGCGGAGTGGGGGTTCTTCCAGGTGGTGAACCACGGCGTCGCGCAGGAGCTCCTGGAGGCGATGCGCCGGGAGCAGGCGCGGCTGTTCCGCCTCCCGTTCGAGGCCAAGTCCAGCGCCGGCCTCCTCAACGACTCCTACCGCTGGGGCACCCCGACCGCCACCTCGCTCCGCCAGCTCTCCTGGTCGGAGGCCTTCCACCTCCCGCTCGCCGGCATCTCCGGCAAATCCTGCAACTACGGCGACCTCACCTCCCTCAGGGACGTGACGCGGGAGGTGGCGGACGCGATGTCGAGGCTGGCCAGGGCGCTGGCGCGCGTGCTGGCGGAGAGCCTCCTGGGCCACGCCGCCGGCGAGCGATTCCCGGAGGGGTGCGACGACGCGACGTGCTTCCTCCGGCTGAACCGCTACCCGCCGTGCCCCTTCCCACCGGACGACGCCTTCGGCCTGGTCCCGCACACCGACAGCGACTTCCTCACCGTGCTCTGCCAGGACCACGTCGGCGGCCTGCAGCTCATGAAGGGCTCCCGCTGGGTCGCCGTCAAGCCCATCCCCGGCGCCCTCATCGTCAACATCGGAGACCTTTTTCAGGTACACCCATTAACTCCAACGTTGTATAAACATCTCAACACAAATCCCTAA More
Protein seq	MPAIADCAAEPPLADSYYALLRLGGDDDDDACTKVTTTPQPVSECELPMIDVGCLTAPTGAAAAAAVGQQHQAEERAACAAAIAAAAAEWGFFQVVNHGVAQELLEAMRREQARLFRLPFEAKSSAGLLNDSYRWGTPTATSLRQLSWSEAFHLPLAGISGKSCNYGDLTSLRDVTREVADAMSRLARALARVLAESLLGHAAGERFPEGCDDATCFLRLNRYPPCPFPPDDAFGLVPHTDSDFLTVLCQDHVGGLQLMKGSRWVAVKPIPGALIVNIGDLFQVHPLTPTLYKHLNTNP More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_02G0409600	OsMH63_02T0409600.2	Chr02	26520330	26524795	-	maker
CDS seq	ATGCCGGCCATCGCGGATTGCGCGGCCGAGCCGCCGCTGGCGGACAGCTACTACGCGCTGCTCCGCCTCGGCGGGGACGACGACGACGACGCGTGCACGAAGGTGACCACGACGCCGCAGCCCGTGTCGGAGTGCGAGCTCCCGATGATCGACGTCGGTTGCCTGACGGCGCCGACCGGCGCCGCCGCCGCCGCCGCCGTGGGGCAGCAGCATCAAGCCGAGGAGAGGGCGGCCTGCGCGGCGGCCATCGCGGCGGCGGCCGCGGAGTGGGGGTTCTTCCAGGTGGTGAACCACGGCGTCGCGCAGGAGCTCCTGGAGGCGATGCGCCGGGAGCAGGCGCGGCTGTTCCGCCTCCCGTTCGAGGCCAAGTCCAGCGCCGGCCTCCTCAACGACTCCTACCGCTGGGGCACCCCGACCGCCACCTCGCTCCGCCAGCTCTCCTGGTCGGAGGCCTTCCACCTCCCGCTCGCCGGCATCTCCGGCAAATCCTGCAACTACGGCGACCTCACCTCCCTCAGGGACGTGACGCGGGAGGTGGCGGACGCGATGTCGAGGCTGGCCAGGGCGCTGGCGCGCGTGCTGGCGGAGAGCCTCCTGGGCCACGCCGCCGGCGAGCGATTCCCGGAGGGGTGCGACGACGCGACGTGCTTCCTCCGGCTGAACCGCTACCCGCCGTGCCCCTTCCCACCGGACGACGCCTTCGGCCTGGTCCCGCACACCGACAGCGACTTCCTCACCGTGCTCTGCCAGGACCACGTCGGCGGCCTGCAGCTCATGAAGGGCTCCCGCTGGGTCGCCGTCAAGCCCATCCCCGGCGCCCTCATCGTCAACATCGGAGACCTTTTTCAGGCGTGGAGCAACAACAGGTACAAGAGCGTGGAGCACAGGGTGATGACGAACGCGACGACGGAGAGATACTCCGTCGCCTACTTCCTCTGCCCGTCGTACGACTCGCCCATCGGCACGTGCAGAGAGCCTTCCCCTTACAAGGCGTTCACCTTCGGGGAGTACAGGCGAAGGGTGCAGGAAGACGTCAAGAAGACGGGGAAGAAGACTGGCCTCAGTAATTTCCTCGTATGA More
Protein seq	MPAIADCAAEPPLADSYYALLRLGGDDDDDACTKVTTTPQPVSECELPMIDVGCLTAPTGAAAAAAVGQQHQAEERAACAAAIAAAAAEWGFFQVVNHGVAQELLEAMRREQARLFRLPFEAKSSAGLLNDSYRWGTPTATSLRQLSWSEAFHLPLAGISGKSCNYGDLTSLRDVTREVADAMSRLARALARVLAESLLGHAAGERFPEGCDDATCFLRLNRYPPCPFPPDDAFGLVPHTDSDFLTVLCQDHVGGLQLMKGSRWVAVKPIPGALIVNIGDLFQAWSNNRYKSVEHRVMTNATTERYSVAYFLCPSYDSPIGTCREPSPYKAFTFGEYRRRVQEDVKKTGKKTGLSNFLV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0817315	7.356174	55.209991

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0630300	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os02g41954	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os02g0630300	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_02g0026020	RBH	0.0	0.0	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_02g0026140	RBH	0.0	0.000000	0.239700
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_02g0025980	RBH	0.0	0.0	0.000000
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_02g0025560	RBH	0.0	0.041510	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_02g0025670	RBH	0.000000	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_04G0409400	RBH	0.0817225	0.1320605	0.5043435
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_02g0025550	RBH	0.0	0.0	0.223163
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_02G0438400	RBH	0.082054	6.0916635	3.018031
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_02g0025770	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_02g0025550	RBH	0.0	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_02g0025880	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_02g0025780	RBH	0.0	0.174254	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_02g0025350	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_02G025960	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_02g0025800	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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