Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0243500 | OGI:02042770 | 10/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:15782440-15785244 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGCTCCTACCACTACCTGAAAAATAAAATGCATAAGGGGTTTATACAAGACAAGTGTAAGCCATACAACAACCGATGATTCAGTAATTGATTGCTACATTATAACATATTACAAGCACCATACAAGACACAAGTTTAATTTTTGTGAAGGTTCAATCTAGTTGACAATCAGTGAATATTTGGAGTAGTCGGAAGAATTCGAAAGGAAGTAAAACAGTAAACTTAATGAGTGAAGCATTATCAACTTTAGATAGTGTCTATAATTAGACAAAAGAGTGCATACCTGACTGATCCCGAGTTAGTAGTGCTGCATTTTCATCGTACTTGATCTATAAAAAGTTAATAGGAGTTAGTAGTATATATGCAGATCACACATAGGTAAAAACACAAATAATTTAGCCTATACATTACATGAGTACGTGGCCAAGCAATTGATCGCCCGAAAGCATTTGCCATTGTTTGTATGCTCCCATATGGACGAGGAAGCACTACATCCCTTTTAATGACTGAGTTCACAACCACTTCATAGAATCTTGGACCAATAGCAGTTCCACCCACCAATGTGCCGGGGTTACTTGTTTGCACAGTAGCCTTCGCCACAGGAAGATTGTATGGAGCCACAAGATAAAGAAGTGTGACTTCTTGGCCACCCTACAACAATATAACACGGTTTTCACAAAAGTAGGACTACAATTTATTTATCAAACTAAAGCTGAAACATAGATATTAACATAAGGACTTTGTAAGAAATTATACCCCCATATTTCTTCTTTCTGGGACTGCAACTGTCTTACGTGGTAACTACACATTCATATAGTTAAGTGTCACCATTTTTTACTTAGTCCGACATAAAACACATAAAAACAATCTAGAACCAATAGCAAAGTGTTGCATACCTGCTGCCTGTAAGCATGGTTGCTAACTTCATGATCACTCACTTGTTGATCAACCTACAATGATGTGGCACAAGGTTTAGAGAAGAATATAACAAGTAATTTATTAGATCGAAACCAAAAACAGAAACATTGTAAAGTAGGACGAGTCTAAATTTATTAGGCTGGGGCCAAAACATAAACATTGACAGCAAGAATATCTAAGAAGTTATACCCCATCATGTCTTCCTTCGGGGATCGCAGCTCTCCTACGTGGTAACTACACATTTTTAAAGTTTGTCACTTTTTTCAGTAAGATCTATATGAAAAGATGAAAAATAAGCCAATAGCTAATGTTGCATACCTTCTGCCTGTAAGCGTGGCTGCTCAGTTCTTGGTCACTCACTTGTTGGTTGACCTACAACAATATAGCAGATTGTTTATAAAAGAATATTCAAAGTGAGAAAAGAGCACCGTTAGAGACTGTTGCTTACATGCTGCCTGTAGTCATGGTTTCTCACTTCGTGGTCATTCATTTCTTGGTCATACTCAGCCTCACTTACATCCACACTATCCTCGCTGGGTGTAGGATTGGAACCACGTTCAAGAGGACTCCCAACATTTGGTGTAGTTTCTCTTCCTTGACTAGCATAGAACATCCGCTTCAACTCTACAATCTCATCCCGTAGCTCGTCCACAGTTCCTTTAAGCATTGTGACCTCTTGCTCAGGTTTTTGTCGACCACGAATTGCAATTTGAACCTTTGTTGGAGTATATTTGCGATGCCCATGAATGCCCAAAGTAGAGGGTGTAGGTCCTAAACCAATAGAGCGAACATACCCCCTTGGCTCACGTCCAAATACATGAGAGAAAACATCACCTTCTTGCACAGTTTTCTCTCTCAATTCTGGATACTTTGTGGTTGCTTCTTGAAGTTTTCTCTAGAACAGAACCAATTTTAGCAGCAAAAAAATATGAATGAATGTAGATGTAAAGTTGGACTAGCTTACAATACTCTCTGCAGCTTGTGTCAATGGAGTCTCATTTTTACGTGTATGGGTTTTGATATACATCTCATCTCTGCGTGGCTTGTAACCATGTTCCACAAACTGCATTCATCGAAACAGTCTAGTGACAAAAAGGCACAAATGGAGTGAATACTAGCAAAAAAAAATTGTTTGATAAATTTACCCATTCATGTCGGGCACGAGCAAATGTCATGCTACCAGAGGTATGTGGAGTTAATACCTTGCCACGATTCATTTTGCCTCTTAAGCTACGAGCCTTCAAAAATAAATTTAATTAAACAAACAACAAGGAAAACAATTAATGATTTAATCATCAGTGTACCTGTGCTTCTGGTGATAGCCAATGATGGACAAGCCACTCCCAATGTTCAGGTAGCACTCTTTTATCACAAGCTGCAATAAGTTCCTCCTCAGTCTTTGTCTCATTAAAATGGGCTTTCTTCAGATCAGCTTTGTAATCCTTCCACTTCTTCGCAGCAGTAGCCAAAGAATAATTTTCAAGCCATTCATCCATCTCATATACGCACTATGCCAAGAAAGGTTACATCCATTAGGTCAAAAGAATAATCCAAAATCAGTTCCTACACCTAGACATATAGCACATAAAAGCTTAGCTAAGAGCAGAGAATAACAGGAGCTACATTATTATAATAAAACAAGGGCAACTGTATAAAGAAAAAAAGTACCATGTCTTGAAGTCTTGATTGTGAGCATGATAATAGAACAAATATATTAGTTTTCATACCTCCAAAGCATCGATAATGAATTGCTTCGAATCTTCATCAACATGTCTCCAGTCATCATGATTGAGAGGGAAACCCTTAGTTCTTACAAGTGTACCAACAACATGTGGAAACTCTTTAGCAGCTTTCCCTACTGGCTGATCAAATTCGTTGAACTCCAT
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| CDS seq | ATGGAGTTCAACGAATTTGATCAGCCAGTAGGGAAAGCTGCTAAAGAGTTTCCACATGTTGTTGGTACACTTGTAAGAACTAAGGGTTTCCCTCTCAATCATGATGACTGGAGACATGTTGATGAAGATTCGAAGCAATTCATTATCGATGCTTTGGAGTGCGTATATGAGATGGATGAATGGCTTGAAAATTATTCTTTGGCTACTGCTGCGAAGAAGTGGAAGGATTACAAAGCTGATCTGAAGAAAGCCCATTTTAATGAGACAAAGACTGAGGAGGAACTTATTGCAGCTTGTGATAAAAGAGTGCTACCTGAACATTGGGAGTGGCTTGTCCATCATTGGCTATCACCAGAAGCACAGGCTCGTAGCTTAAGAGGCAAAATGAATCGTGGCAAGGTATTAACTCCACATACCTCTGGTAGCATGACATTTGCTCGTGCCCGACATGAATGGTTTGTGGAACATGGTTACAAGCCACGCAGAGATGAGATGTATATCAAAACCCATACACGTAAAAATGAGACTCCATTGACACAAGCTGCAGAGAGTATTAGAAAACTTCAAGAAGCAACCACAAAGTATCCAGAATTGAGAGAGAAAACTGTGCAAGAAGGTGATGTTTTCTCTCATGTATTTGGACGTGAGCCAAGGGGGTATGTTCGCTCTATTGGTTTAGGACCTACACCCTCTACTTTGGGCATTCATGGGCATCGCAAATATACTCCAACAAAGGTTCAAATTGCAATTCGTGGTCGACAAAAACCTGAGCAAGAGGTCACAATGCTTAAAGGAACTGTGGACGAGCTACGGGATGAGATTGTAGAGTTGAAGCGGATGTTCTATGCTAGTCAAGGAAGAGAAACTACACCAAATGTTGGGAGTCCTCTTGAACGTGGTTCCAATCCTACACCCAGCGAGGATAGTGTGGATGTAAGTGAGGCTGAGTATGACCAAGAAATGAATGACCACGAAGTGAGAAACCATGACTACAGGCAGCATGTCAACCAACAAGTGAGTGACCAAGAACTGAGCAGCCACGCTTACAGGCAGAAGTTACCACGTAGGAGAGCTGCGATCCCCGAAGGAAGACATGATGGGGTTGATCAACAAGTGAGTGATCATGAAGTTAGCAACCATGCTTACAGGCAGCAGTTACCACGTAAGACAGTTGCAGTCCCAGAAAGAAGAAATATGGGGGGTGGCCAAGAAGTCACACTTCTTTATCTTGTGGCTCCATACAATCTTCCTGTGGCGAAGGCTACTGTGCAAACAAGTAACCCCGGCACATTGGTGGGTGGAACTGCTATTGGTCCAAGATTCTATGAAGTGGTTGTGAACTCAGTCATTAAAAGGGATGTAGTGCTTCCTCGTCCATATGGGAGCATACAAACAATGGCAAATGCTTTCGGGCGATCAATTGCTTGGCCACGTACTCATATCAAGTACGATGAAAATGCAGCACTACTAACTCGGGATCAGTCAGGTAGTGGTAGGAGCTGA
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| Protein seq | MEFNEFDQPVGKAAKEFPHVVGTLVRTKGFPLNHDDWRHVDEDSKQFIIDALECVYEMDEWLENYSLATAAKKWKDYKADLKKAHFNETKTEEELIAACDKRVLPEHWEWLVHHWLSPEAQARSLRGKMNRGKVLTPHTSGSMTFARARHEWFVEHGYKPRRDEMYIKTHTRKNETPLTQAAESIRKLQEATTKYPELREKTVQEGDVFSHVFGREPRGYVRSIGLGPTPSTLGIHGHRKYTPTKVQIAIRGRQKPEQEVTMLKGTVDELRDEIVELKRMFYASQGRETTPNVGSPLERGSNPTPSEDSVDVSEAEYDQEMNDHEVRNHDYRQHVNQQVSDQELSSHAYRQKLPRRRAAIPEGRHDGVDQQVSDHEVSNHAYRQQLPRKTVAVPERRNMGGGQEVTLLYLVAPYNLPVAKATVQTSNPGTLVGGTAIGPRFYEVVVNSVIKRDVVLPRPYGSIQTMANAFGRSIAWPRTHIKYDENAALLTRDQSGSGRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0243500 | OsMH63_02T0243500.1 | Chr02 | 15782440 | 15785244 | - | maker | ||
| CDS seq | ATGGAGTTCAACGAATTTGATCAGCCAGTAGGGAAAGCTGCTAAAGAGTTTCCACATGTTGTTGGTACACTTGTAAGAACTAAGGGTTTCCCTCTCAATCATGATGACTGGAGACATGTTGATGAAGATTCGAAGCAATTCATTATCGATGCTTTGGAGTGCGTATATGAGATGGATGAATGGCTTGAAAATTATTCTTTGGCTACTGCTGCGAAGAAGTGGAAGGATTACAAAGCTGATCTGAAGAAAGCCCATTTTAATGAGACAAAGACTGAGGAGGAACTTATTGCAGCTTGTGATAAAAGAGTGCTACCTGAACATTGGGAGTGGCTTGTCCATCATTGGCTATCACCAGAAGCACAGGCTCGTAGCTTAAGAGGCAAAATGAATCGTGGCAAGGTATTAACTCCACATACCTCTGGTAGCATGACATTTGCTCGTGCCCGACATGAATGGTTTGTGGAACATGGTTACAAGCCACGCAGAGATGAGATGTATATCAAAACCCATACACGTAAAAATGAGACTCCATTGACACAAGCTGCAGAGAGTATTAGAAAACTTCAAGAAGCAACCACAAAGTATCCAGAATTGAGAGAGAAAACTGTGCAAGAAGGTGATGTTTTCTCTCATGTATTTGGACGTGAGCCAAGGGGGTATGTTCGCTCTATTGGTTTAGGACCTACACCCTCTACTTTGGGCATTCATGGGCATCGCAAATATACTCCAACAAAGGTTCAAATTGCAATTCGTGGTCGACAAAAACCTGAGCAAGAGGTCACAATGCTTAAAGGAACTGTGGACGAGCTACGGGATGAGATTGTAGAGTTGAAGCGGATGTTCTATGCTAGTCAAGGAAGAGAAACTACACCAAATGTTGGGAGTCCTCTTGAACGTGGTTCCAATCCTACACCCAGCGAGGATAGTGTGGATGTAAGTGAGGCTGAGTATGACCAAGAAATGAATGACCACGAAGTGAGAAACCATGACTACAGGCAGCATGTCAACCAACAAGTGAGTGACCAAGAACTGAGCAGCCACGCTTACAGGCAGAAGTTACCACGTAGGAGAGCTGCGATCCCCGAAGGAAGACATGATGGGGTTGATCAACAAGTGAGTGATCATGAAGTTAGCAACCATGCTTACAGGCAGCAGTTACCACGTAAGACAGTTGCAGTCCCAGAAAGAAGAAATATGGGGGGTGGCCAAGAAGTCACACTTCTTTATCTTGTGGCTCCATACAATCTTCCTGTGGCGAAGGCTACTGTGCAAACAAGTAACCCCGGCACATTGGTGGGTGGAACTGCTATTGGTCCAAGATTCTATGAAGTGGTTGTGAACTCAGTCATTAAAAGGGATGTAGTGCTTCCTCGTCCATATGGGAGCATACAAACAATGGCAAATGCTTTCGGGCGATCAATTGCTTGGCCACGTACTCATATCAAGTACGATGAAAATGCAGCACTACTAACTCGGGATCAGTCAGGTAGTGGTAGGAGCTGA
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| Protein seq | MEFNEFDQPVGKAAKEFPHVVGTLVRTKGFPLNHDDWRHVDEDSKQFIIDALECVYEMDEWLENYSLATAAKKWKDYKADLKKAHFNETKTEEELIAACDKRVLPEHWEWLVHHWLSPEAQARSLRGKMNRGKVLTPHTSGSMTFARARHEWFVEHGYKPRRDEMYIKTHTRKNETPLTQAAESIRKLQEATTKYPELREKTVQEGDVFSHVFGREPRGYVRSIGLGPTPSTLGIHGHRKYTPTKVQIAIRGRQKPEQEVTMLKGTVDELRDEIVELKRMFYASQGRETTPNVGSPLERGSNPTPSEDSVDVSEAEYDQEMNDHEVRNHDYRQHVNQQVSDQELSSHAYRQKLPRRRAAIPEGRHDGVDQQVSDHEVSNHAYRQQLPRKTVAVPERRNMGGGQEVTLLYLVAPYNLPVAKATVQTSNPGTLVGGTAIGPRFYEVVVNSVIKRDVVLPRPYGSIQTMANAFGRSIAWPRTHIKYDENAALLTRDQSGSGRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0980605 | 0.42316 | 0.3404755 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0030300 | RBH | 7.3562745 | 6.494396 | 7.556242 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015280 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015390 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016151 | RBH | 1.120631 | 0.0 | 2.068984 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
