Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0138100 | OGI:02024160 | 4/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:8594175-8594816 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACACCATTTGGGCCGGCAATGGCGGCGCGGCGAAGGCGTCGCACCGGCAGACTGGGCAGGTGGAGTGGTCGCGCAGCCACGGGTCGATGCACCGCCGGTGGAACATGTGCAGGCACACCGGCAGCCGCTTCACCATCTCCCCCTTCTCCACCTCGCCCAGGCACACCGCGCACTCCGCCGCCGCCGCCGCCGCGCCGCCCTCGCTCGCCGCCGGCTGCTCGTACGCGGGGATGTCGTCCGCCGTCGCAACCCGCGCCCCCCACCTCACCGGAGGCTCGCGTTCCAGCACGTACATGTGCGGTGGCAGAGCAGAAGCGGACGAGGAGGTGCTCGTCGCCGGACGCCGCCGCCGCCGCCGCGGGCACCGGCACGGCAGGCAGAGCAGCCACCGGGCGGCGCGCGGGAGCGGCGCGAGGCACCGCCGCAGCGCGGACCACGGGAAGAGCATGCCGCAGAAGACCGAGTAGACGACGGCGTTGATGCTGACCCAGAACACGAGGGAGATGGCGAGCGCCACGACGCCGCCCTTGCTCCCCGGCGTCCGCGCCAGCCTGACGAGCTGGTAGACGAGCAGGCTCGTGCCGCCGATGGACACCGCGTTGGCGATGGCCAGACCGTACACGCGGAAGCAGCACTCCAT
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| CDS seq | ATGGAGTGCTGCTTCCGCGTGTACGGTCTGGCCATCGCCAACGCGGTGTCCATCGGCGGCACGAGCCTGCTCGTCTACCAGCTCGTCAGGCTGGCGCGGACGCCGGGGAGCAAGGGCGGCGTCGTGGCGCTCGCCATCTCCCTCGTGTTCTGGGTCAGCATCAACGCCGTCGTCTACTCGGTCTTCTGCGGCATGCTCTTCCCGTGGTCCGCGCTGCGGCGGTGCCTCGCGCCGCTCCCGCGCGCCGCCCGGTGGCTGCTCTGCCTGCCGTGCCGGTGCCCGCGGCGGCGGCGGCGGCGTCCGGCGACGAGCACCTCCTCGTCCGCTTCTGCTCTGCCACCGCACATGTACGTGCTGGAACGCGAGCCTCCGGTGAGGTGGGGGGCGCGGGTTGCGACGGCGGACGACATCCCCGCGTACGAGCAGCCGGCGGCGAGCGAGGGCGGCGCGGCGGCGGCGGCGGCGGAGTGCGCGGTGTGCCTGGGCGAGGTGGAGAAGGGGGAGATGGTGAAGCGGCTGCCGGTGTGCCTGCACATGTTCCACCGGCGGTGCATCGACCCGTGGCTGCGCGACCACTCCACCTGCCCAGTCTGCCGGTGCGACGCCTTCGCCGCGCCGCCATTGCCGGCCCAAATGGTGTGA
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| Protein seq | MECCFRVYGLAIANAVSIGGTSLLVYQLVRLARTPGSKGGVVALAISLVFWVSINAVVYSVFCGMLFPWSALRRCLAPLPRAARWLLCLPCRCPRRRRRRPATSTSSSASALPPHMYVLEREPPVRWGARVATADDIPAYEQPAASEGGAAAAAAECAVCLGEVEKGEMVKRLPVCLHMFHRRCIDPWLRDHSTCPVCRCDAFAAPPLPAQMV |
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| Function | RING-H2 finger protein ATL32 [UniProtKB/Swiss-Prot:Q8W571] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0138100 | OsMH63_02T0138100.1 | Chr02 | 8594175 | 8594816 | - | maker | ||
| CDS seq | ATGGAGTGCTGCTTCCGCGTGTACGGTCTGGCCATCGCCAACGCGGTGTCCATCGGCGGCACGAGCCTGCTCGTCTACCAGCTCGTCAGGCTGGCGCGGACGCCGGGGAGCAAGGGCGGCGTCGTGGCGCTCGCCATCTCCCTCGTGTTCTGGGTCAGCATCAACGCCGTCGTCTACTCGGTCTTCTGCGGCATGCTCTTCCCGTGGTCCGCGCTGCGGCGGTGCCTCGCGCCGCTCCCGCGCGCCGCCCGGTGGCTGCTCTGCCTGCCGTGCCGGTGCCCGCGGCGGCGGCGGCGGCGTCCGGCGACGAGCACCTCCTCGTCCGCTTCTGCTCTGCCACCGCACATGTACGTGCTGGAACGCGAGCCTCCGGTGAGGTGGGGGGCGCGGGTTGCGACGGCGGACGACATCCCCGCGTACGAGCAGCCGGCGGCGAGCGAGGGCGGCGCGGCGGCGGCGGCGGCGGAGTGCGCGGTGTGCCTGGGCGAGGTGGAGAAGGGGGAGATGGTGAAGCGGCTGCCGGTGTGCCTGCACATGTTCCACCGGCGGTGCATCGACCCGTGGCTGCGCGACCACTCCACCTGCCCAGTCTGCCGGTGCGACGCCTTCGCCGCGCCGCCATTGCCGGCCCAAATGGTGTGA
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| Protein seq | MECCFRVYGLAIANAVSIGGTSLLVYQLVRLARTPGSKGGVVALAISLVFWVSINAVVYSVFCGMLFPWSALRRCLAPLPRAARWLLCLPCRCPRRRRRRPATSTSSSASALPPHMYVLEREPPVRWGARVATADDIPAYEQPAASEGGAAAAAAECAVCLGEVEKGEMVKRLPVCLHMFHRRCIDPWLRDHSTCPVCRCDAFAAPPLPAQMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.034262 | 3.585367 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0178600 | SBH | 1.424589 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15010 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0178600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0010660 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0010750 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0010620 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010440 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010570 | SBH | 0.263175 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0526400 | SBH | 3.8766685 | 44.186781 | 11.0153685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010330 | RBH | 0.026031 | 0.200497 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0145600 | SBH | 0.057 | 1.539451 | 0.019385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010860 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010480 | SBH | 0.0 | 0.973875 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010840 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010830 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010500 | RBH | 0.149334 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010730 | RBH | 0.045426 | 0.221712 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010530 | SBH | 0.0 | 0.0 | 0.0 |
