Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0574300 | OGI:01103960 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:36534615-36536021 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | CTAAGTCCCATCAACCAAAGCAAGCCCAGGAACCTTAACAGAATTCCTCTGATCGACTAGTTTTCGTACTATTTCAGCATCACTAAACCTACGAAGCTCAGTAAGCATATTGGATAGAACCACAAAATCACCACCAAATTCTCTTTCTAAGGCTAATATCTTCTTCATTGTCCTCTCTCCCATCTCAACTTCTCCATACTTACTGCAACAACCCAACAGCGTCCTCCAGACAGTTGCATTGACTTCCACAGGAAAATCTCTTATTATCTGCTCAGCTTCACGCAAACGTCCAGCCCTACCTAGCATGTCTATGATACACCCAAAATGCTTGACATCTGGATTTATGTTGTATTCATAAATCATGCTTTTGAAAAATGCAACTCCTTGCTCTACCAGCCCTCCATGGCTACAAGCATGGAGGACACTCAAGAAGGTTATTCTGTTAGGTCTGATTCCAGCTCTTCTCATATCGGCAAACAGTTCGACTGCCTTAACTGACAACCCATGCATTGCAAAACCTGAAATTATTGATGTCCATGACACCAAGTTCCTTCTGTCCAGCATTTCATCAAACACCCTTAGCGAATTCTGAATAGACCCAATCTTGGCATACAAGTCTATGAGTGAATTGCCAACCCGAACATCCCACACAAGACCCTCCTTCTCACAATAGCCATGCAATGCTTCCCCGATAAGAATCTTTCCAACATTAGATAGTGCAGGAACAACTGCCAACACAGTTATCTCGCTTGGACTAATGCCTTCTGCCATCATGCGGCGGAAAAGAGCAACAGCCTCGACAGGGCGACAAGCACGCGTATACCCATCTATCATCCCGCTCCACGAAACAACATTCCTACAAGGCATCCGCTCAAAGAGCAGCCTCGCATACTCAACCTCGCCCCATCCAGCAAAGCCTGTTATCACCACATTCCAAGAAACCGCGTTCTTCACCGGCATTTCCTCGAACGCCATCCGTGCATCCGCCAGGCACCCGCACAAGATATACACATTGACAAGGGCAGTATGCACGTAGGTCTGGAACTCGAACCCCTTCCGTACGACAAGCCCATGGAGCTGCATGCAACACCGCGGCCACCCCAGGCCAGCGCAGGCCTTGAGGGCAAACGTGAAGGCGTACGTGTCGTCGGCCGCGTGCCACCGCGCGTGCCTGAAGAGCTGCAGGGCATCCTGCGGGTGAGGGCCATGCGAGTAGGCCTTGAGGAGGGCGTGCCACGGCGTGGGACGCCGGTCGAACACCTGGTGGGCAATGAGCTGGGAGTGGATCTGCAGGAGCTGGCGCCTCCTTTCCTGGTGCTCCAGGAGGAGCGCCACTAGGCGGCGGGCGGCGATCGCATCGACGGGTGGGCTTGTGCGCCCCAAGAAGCGAGGTGACAGCCCAGCCAT
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| CDS seq | ATGGCTGGGCTGTCACCTCGCTTCTTGGGGCGCACAAGCCCACCCGTCGATGCGATCGCCGCCCGCCGCCTAGTGGCGCTCCTCCTGGAGCACCAGGAAAGGAGGCGCCAGCTCCTGCAGATCCACTCCCAGCTCATTGCCCACCAGGTGTTCGACCGGCGTCCCACGCCGTGGCACGCCCTCCTCAAGGCCTACTCGCATGGCCCTCACCCGCAGGATGCCCTGCAGCTCTTCAGGCACGCGCGGTGGCACGCGGCCGACGACACGTACGCCTTCACGTTTGCCCTCAAGGCCTGCGCTGGCCTGGGGTGGCCGCGGTGTTGCATGCAGCTCCATGGGCTTGTCGTACGGAAGGGGTTCGAGTTCCAGACCTACGTGCATACTGCCCTTGTCAATGTGTATATCTTGTGCGGGTGCCTGGCGGATGCACGGATGGCGTTCGAGGAAATGCCGGTGAAGAACGCGGTTTCTTGGAATGTGGTGATAACAGGCTTTGCTGGATGGGGCGAGGTTGAGTATGCGAGGCTGCTCTTTGAGCGGATGCCTTGTAGGAATGTTGTTTCGTGGAGCGGGATGATAGATGGGTATACGCGTGCTTGTCGCCCTGTCGAGGCTGTTGCTCTTTTCCGCCGCATGATGGCAGAAGGCATTAGTCCAAGCGAGATAACTGTGTTGGCAGTTGTTCCTGCACTATCTAATGTTGGAAAGATTCTTATCGGGGAAGCATTGCATGGCTATTGTGAGAAGGAGGGTCTTGTGTGGGATGTTCGGGTTGGCAATTCACTCATAGACTTGTATGCCAAGATTGGGTCTATTCAGAATTCGCTAAGGGTGTTTGATGAAATGCTGGACAGAAGGAACTTGGTGTCATGGACATCAATAATTTCAGGTTTTGCAATGCATGGGTTGTCAGTTAAGGCAGTCGAACTGTTTGCCGATATGAGAAGAGCTGGAATCAGACCTAACAGAATAACCTTCTTGAGTGTCCTCCATGCTTGTAGCCATGGAGGGCTGGTAGAGCAAGGAGTTGCATTTTTCAAAAGCATGATTTATGAATACAACATAAATCCAGATGTCAAGCATTTTGGGTGTATCATAGACATGCTAGGTAGGGCTGGACGTTTGCGTGAAGCTGAGCAGATAATAAGAGATTTTCCTGTGGAAGTCAATGCAACTGTCTGGAGGACGCTGTTGGGTTGTTGCAGTAAGTATGGAGAAGTTGAGATGGGAGAGAGGACAATGAAGAAGATATTAGCCTTAGAAAGAGAATTTGGTGGTGATTTTGTGGTTCTATCCAATATGCTTACTGAGCTTCGTAGGTTTAGTGATGCTGAAATAGTACGAAAACTAGTCGATCAGAGGAATTCTGTTAAGGTTCCTGGGCTTGCTTTGGTTGATGGGACTTAG
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| Protein seq | MAGLSPRFLGRTSPPVDAIAARRLVALLLEHQERRRQLLQIHSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADARMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKVPGLALVDGT |
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| Function | Pentatricopeptide repeat-containing protein At1g09220, mitochondrial [UniProtKB/Swiss-Prot:Q680Z7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0574300 | OsMH63_01T0574300.1 | Chr01 | 36534615 | 36536021 | - | maker | ||
| CDS seq | ATGGCTGGGCTGTCACCTCGCTTCTTGGGGCGCACAAGCCCACCCGTCGATGCGATCGCCGCCCGCCGCCTAGTGGCGCTCCTCCTGGAGCACCAGGAAAGGAGGCGCCAGCTCCTGCAGATCCACTCCCAGCTCATTGCCCACCAGGTGTTCGACCGGCGTCCCACGCCGTGGCACGCCCTCCTCAAGGCCTACTCGCATGGCCCTCACCCGCAGGATGCCCTGCAGCTCTTCAGGCACGCGCGGTGGCACGCGGCCGACGACACGTACGCCTTCACGTTTGCCCTCAAGGCCTGCGCTGGCCTGGGGTGGCCGCGGTGTTGCATGCAGCTCCATGGGCTTGTCGTACGGAAGGGGTTCGAGTTCCAGACCTACGTGCATACTGCCCTTGTCAATGTGTATATCTTGTGCGGGTGCCTGGCGGATGCACGGATGGCGTTCGAGGAAATGCCGGTGAAGAACGCGGTTTCTTGGAATGTGGTGATAACAGGCTTTGCTGGATGGGGCGAGGTTGAGTATGCGAGGCTGCTCTTTGAGCGGATGCCTTGTAGGAATGTTGTTTCGTGGAGCGGGATGATAGATGGGTATACGCGTGCTTGTCGCCCTGTCGAGGCTGTTGCTCTTTTCCGCCGCATGATGGCAGAAGGCATTAGTCCAAGCGAGATAACTGTGTTGGCAGTTGTTCCTGCACTATCTAATGTTGGAAAGATTCTTATCGGGGAAGCATTGCATGGCTATTGTGAGAAGGAGGGTCTTGTGTGGGATGTTCGGGTTGGCAATTCACTCATAGACTTGTATGCCAAGATTGGGTCTATTCAGAATTCGCTAAGGGTGTTTGATGAAATGCTGGACAGAAGGAACTTGGTGTCATGGACATCAATAATTTCAGGTTTTGCAATGCATGGGTTGTCAGTTAAGGCAGTCGAACTGTTTGCCGATATGAGAAGAGCTGGAATCAGACCTAACAGAATAACCTTCTTGAGTGTCCTCCATGCTTGTAGCCATGGAGGGCTGGTAGAGCAAGGAGTTGCATTTTTCAAAAGCATGATTTATGAATACAACATAAATCCAGATGTCAAGCATTTTGGGTGTATCATAGACATGCTAGGTAGGGCTGGACGTTTGCGTGAAGCTGAGCAGATAATAAGAGATTTTCCTGTGGAAGTCAATGCAACTGTCTGGAGGACGCTGTTGGGTTGTTGCAGTAAGTATGGAGAAGTTGAGATGGGAGAGAGGACAATGAAGAAGATATTAGCCTTAGAAAGAGAATTTGGTGGTGATTTTGTGGTTCTATCCAATATGCTTACTGAGCTTCGTAGGTTTAGTGATGCTGAAATAGTACGAAAACTAGTCGATCAGAGGAATTCTGTTAAGGTTCCTGGGCTTGCTTTGGTTGATGGGACTTAG
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| Protein seq | MAGLSPRFLGRTSPPVDAIAARRLVALLLEHQERRRQLLQIHSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADARMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKVPGLALVDGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0815900 | RBH | 0.069572 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g60000 | RBH | 0.327029 | 0.0 | 0.083814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0815900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037990 | SBH | 0.161092 | 1.485077 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037430 | SBH | 0.000000 | 0.0 | 0.176670 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037840 | SBH | 0.0 | 1.060641 | 1.874158 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0037240 | SBH | 0.040292 | 0.066654 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036930 | SBH | 1.122627 | 1.465656 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0366600 | RBH | 1.5444945 | 4.7563695 | 6.7364 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036630 | RBH | 0.054757 | 0.090364 | 0.170118 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0570800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036840 | RBH | 0.080102 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036890 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0037120 | RBH | 0.666594 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037180 | RBH | 0.052158 | 0.0 | 0.130201 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036950 | RBH | 0.064754 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037480 | SBH | 0.166377 | 0.251679 | 0.100409 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037160 | SBH | 0.403436 | 3.314986 | 0.176031 |
