Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0526200 | OGI:01095630 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:33526028-33527429 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTGGTCAAGATACACAACATGCCTATAGACTTCAACACTATTATGGAGCTCAGTCACTTCAGTTGTATCATCCGCTCCCTTCATGACTCTCATGTTGGCTAAACCTCTAGTTGTTGCCTTTAGTTGTGTGACAATTGCAGGTAAAATGTTTCTGCCTTCTAGTTTTTCTCCAATCTTCCTTCTCTTAGCCCACAAGGCTGCTGTCTTCTCTCTGATTGCATCTGCTAGGGCATCAACTTGCAGTTCCTTGAATTCTTTGATCCATGCATTCCATGACTCAGCCACATTATTAATGATGAAGTCACATTTGATCTTTGGTGAGAACTTGCTCCTTGCCCACAGAAGTTTATGATGTTTGTATAACCAATCACCAACATCAGGATCAGCTGATAAAACCTTATCCATGTGATAGTCATAGATCTCAGACCTAAAAGCTCTAGCAACTGGCCACAAGTTACCATAAACTGTACCAGTTTTCCTCTTTGTCAAGTTTTCCATCAAGTGCCTAAAGCACTCCCTCTTCTCACAGTTAGGAAAAACCCTCTCAACTATATTTTCTAGGCCCTTGCAAGCATCTGTACATATTGCCAGGTCTTCCACATGTCCAATACACACTGCAAGTTGCTCCATGAACCAAGTCCAGTTATCAGTGGTTTCTGCATCAAAGAACCCAAATGCCATTGGGTACATCCAATTATGCCCATCTAAGGCATTTGCTGCTGCCAAGTGGCCATTCCACTTCCCATTTAGGGCCGTAGAATCAATGCTAAGGTATTTTCTGCATCCTAACAAGAAACCTGTGATGCAAGGCTCAAAGCAACAAAAGAACCTCTCAAAGTGAACTTGACCATTTACTTCCTTGGTACCAATTTCAACTCGACTGCCAGGACACCTCAACTCTATCTTAGCCTTAAAGTTATACAAGGAATCAAAGCTATCATCCCATGAACCCCAAATCTTTTGTATGGCCCTCTCTTTACCCTTCCAAACAGTGGAGTAAGGAATCTGTACCTTGTACCGCTCCTCTAATATGGTCTTTAGCTCCTTGGCCCCACAATTTGGCTTCTTCCTCATAATTGCAGCAGCTCTATCTGCTACCCAAGCTTGTGATGCCATTCTTCCAAGAACCCTGCTAGTAGAGGAACAATCATGCTTTCCTGCATTTATTTGCACCTGCACATCGATACAAAGCAAGTTAGCAGCAAGTTAGGAAAAAAACAAGTAGCTACCCAAAAATTAACAACAGGGATTATACCCTGACAGTCTTATCATGTTGAGTTCGGCCAACAATCCTCCATTGACAACCATCTTCTGTACAGAATCCCCTAAACCTGGTAGGGTCAGACTTCTCAGTGCCAAGCTCAAATTCTTCATTGATGGCATATTGCCTGACAGCCAT
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| CDS seq | ATGGCTGTCAGGCAATATGCCATCAATGAAGAATTTGAGCTTGGCACTGAGAAGTCTGACCCTACCAGGTTTAGGGGATTCTGTACAGAAGATGGTTGTCAATGGAGGATTGTTGGCCGAACTCAACATGATAAGACTGTCAGGGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTGGAAGAATGGCATCACAAGCTTGGGTAGCAGATAGAGCTGCTGCAATTATGAGGAAGAAGCCAAATTGTGGGGCCAAGGAGCTAAAGACCATATTAGAGGAGCGGTACAAGGTACAGATTCCTTACTCCACTGTTTGGAAGGGTAAAGAGAGGGCCATACAAAAGATTTGGGGTTCATGGGATGATAGCTTTGATTCCTTGTATAACTTTAAGGCTAAGATAGAGTTGAGGTGTCCTGGCAGTCGAGTTGAAATTGGTACCAAGGAAGTAAATGGTCAAGTTCACTTTGAGAGGTTCTTTTGTTGCTTTGAGCCTTGCATCACAGGTTTCTTGTTAGGATGCAGAAAATACCTTAGCATTGATTCTACGGCCCTAAATGGGAAGTGGAATGGCCACTTGGCAGCAGCAAATGCCTTAGATGGGCATAATTGGATGTACCCAATGGCATTTGGGTTCTTTGATGCAGAAACCACTGATAACTGGACTTGGTTCATGGAGCAACTTGCAGTGTGTATTGGACATGTGGAAGACCTGGCAATATGTACAGATGCTTGCAAGGGCCTAGAAAATATAGTTGAGAGGGTTTTTCCTAACTGTGAGAAGAGGGAGTGCTTTAGGCACTTGATGGAAAACTTGACAAAGAGGAAAACTGGTACAGTTTATGGTAACTTGTGGCCAGTTGCTAGAGCTTTTAGGTCTGAGATCTATGACTATCACATGGATAAGGTTTTATCAGCTGATCCTGATGTTGGTGATTGGTTATACAAACATCATAAACTTCTGTGGGCAAGGAGCAAGTTCTCACCAAAGATCAAATGTGACTTCATCATTAATAATGTGGCTGAGTCATGGAATGCATGGATCAAAGAATTCAAGGAACTGCAAGTTGATGCCCTAGCAGATGCAATCAGAGAGAAGACAGCAGCCTTGTGGGCTAAGAGAAGGAAGATTGGAGAAAAACTAGAAGGCAGAAACATTTTACCTGCAATTGTCACACAACTAAAGGCAACAACTAGAGGTTTAGCCAACATGAGAGTCATGAAGGGAGCGGATGATACAACTGAAGTGACTGAGCTCCATAATAGTGTTGAAGTCTATAGGCATGTTGTGTATCTTGACCAATAG
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| Protein seq | MAVRQYAINEEFELGTEKSDPTRFRGFCTEDGCQWRIVGRTQHDKTVRVQINAGKHDCSSTSRVLGRMASQAWVADRAAAIMRKKPNCGAKELKTILEERYKVQIPYSTVWKGKERAIQKIWGSWDDSFDSLYNFKAKIELRCPGSRVEIGTKEVNGQVHFERFFCCFEPCITGFLLGCRKYLSIDSTALNGKWNGHLAAANALDGHNWMYPMAFGFFDAETTDNWTWFMEQLAVCIGHVEDLAICTDACKGLENIVERVFPNCEKRECFRHLMENLTKRKTGTVYGNLWPVARAFRSEIYDYHMDKVLSADPDVGDWLYKHHKLLWARSKFSPKIKCDFIINNVAESWNAWIKEFKELQVDALADAIREKTAALWAKRRKIGEKLEGRNILPAIVTQLKATTRGLANMRVMKGADDTTEVTELHNSVEVYRHVVYLDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0526200 | OsMH63_01T0526200.1 | Chr01 | 33526028 | 33527429 | - | maker | ||
| CDS seq | ATGGCTGTCAGGCAATATGCCATCAATGAAGAATTTGAGCTTGGCACTGAGAAGTCTGACCCTACCAGGTTTAGGGGATTCTGTACAGAAGATGGTTGTCAATGGAGGATTGTTGGCCGAACTCAACATGATAAGACTGTCAGGGTGCAAATAAATGCAGGAAAGCATGATTGTTCCTCTACTAGCAGGGTTCTTGGAAGAATGGCATCACAAGCTTGGGTAGCAGATAGAGCTGCTGCAATTATGAGGAAGAAGCCAAATTGTGGGGCCAAGGAGCTAAAGACCATATTAGAGGAGCGGTACAAGGTACAGATTCCTTACTCCACTGTTTGGAAGGGTAAAGAGAGGGCCATACAAAAGATTTGGGGTTCATGGGATGATAGCTTTGATTCCTTGTATAACTTTAAGGCTAAGATAGAGTTGAGGTGTCCTGGCAGTCGAGTTGAAATTGGTACCAAGGAAGTAAATGGTCAAGTTCACTTTGAGAGGTTCTTTTGTTGCTTTGAGCCTTGCATCACAGGTTTCTTGTTAGGATGCAGAAAATACCTTAGCATTGATTCTACGGCCCTAAATGGGAAGTGGAATGGCCACTTGGCAGCAGCAAATGCCTTAGATGGGCATAATTGGATGTACCCAATGGCATTTGGGTTCTTTGATGCAGAAACCACTGATAACTGGACTTGGTTCATGGAGCAACTTGCAGTGTGTATTGGACATGTGGAAGACCTGGCAATATGTACAGATGCTTGCAAGGGCCTAGAAAATATAGTTGAGAGGGTTTTTCCTAACTGTGAGAAGAGGGAGTGCTTTAGGCACTTGATGGAAAACTTGACAAAGAGGAAAACTGGTACAGTTTATGGTAACTTGTGGCCAGTTGCTAGAGCTTTTAGGTCTGAGATCTATGACTATCACATGGATAAGGTTTTATCAGCTGATCCTGATGTTGGTGATTGGTTATACAAACATCATAAACTTCTGTGGGCAAGGAGCAAGTTCTCACCAAAGATCAAATGTGACTTCATCATTAATAATGTGGCTGAGTCATGGAATGCATGGATCAAAGAATTCAAGGAACTGCAAGTTGATGCCCTAGCAGATGCAATCAGAGAGAAGACAGCAGCCTTGTGGGCTAAGAGAAGGAAGATTGGAGAAAAACTAGAAGGCAGAAACATTTTACCTGCAATTGTCACACAACTAAAGGCAACAACTAGAGGTTTAGCCAACATGAGAGTCATGAAGGGAGCGGATGATACAACTGAAGTGACTGAGCTCCATAATAGTGTTGAAGTCTATAGGCATGTTGTGTATCTTGACCAATAG
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| Protein seq | MAVRQYAINEEFELGTEKSDPTRFRGFCTEDGCQWRIVGRTQHDKTVRVQINAGKHDCSSTSRVLGRMASQAWVADRAAAIMRKKPNCGAKELKTILEERYKVQIPYSTVWKGKERAIQKIWGSWDDSFDSLYNFKAKIELRCPGSRVEIGTKEVNGQVHFERFFCCFEPCITGFLLGCRKYLSIDSTALNGKWNGHLAAANALDGHNWMYPMAFGFFDAETTDNWTWFMEQLAVCIGHVEDLAICTDACKGLENIVERVFPNCEKRECFRHLMENLTKRKTGTVYGNLWPVARAFRSEIYDYHMDKVLSADPDVGDWLYKHHKLLWARSKFSPKIKCDFIINNVAESWNAWIKEFKELQVDALADAIREKTAALWAKRRKIGEKLEGRNILPAIVTQLKATTRGLANMRVMKGADDTTEVTELHNSVEVYRHVVYLDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.9311315 | 13.017203 | 30.8978365 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0595300 | SBH | 0.916307 | 0.456079 | 1.496882 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55090 | SBH | 0.554178 | 0.336009 | 1.079088 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0595300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0466700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
