Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0595300 | OGI:01072690 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:23329802-23331517 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAGGGCCGTCAAGGACATGGCCATTGCTATGCATTTCGAGCTCCGTGTCGTGAAATCTGACCGGAGCCGGTTCATCGCCAAGTGCGCGAGGGAAGGCTGCCCGTGGCGTGTGCATGTGGCAAAGTGCCATGGTGTCCCGACTTTCACTGTACGCACATTGCACGGGGAGCACACGTGCGACGGTGTGCGTGACTTGCATCATCACCAGGCTACCGTTGGTTGGGTTGCTAGGTCCGTTGAGGCAACGCTAAGAGATAACCCACAGTATAAGCCAAAAGAGATATTGCAGGATATCCGAGAGCAGCATGGAGTAGCAGTTTCTTATATGCAGGCATGGCGTGGGAAGGAGAGAAGCATGGCTGCTGTTCATGGCACCCTTGAGGATGGATATCGCTTTCTTCCTGCCTACTGTGAGCAGATTGTACAGACAAATCCTGGCAGTGTTGCAATATACAAAGGGACTGGACCAGATAATAGCTTCCAGCGGCTGTTCGTGTCGTTCCATGCATCTATTCATGGTTTCTTAAATGCATGTAGACCCCTTTTGGAAATTGACAAGGCAGACCTCAAGGGAAAGTATCTTGGGACATTGCTATGTGCGTCAGCTGTTGATGCTGAAAACATGATGTTCCCGCTAGCATTTGGTATTGTTGACGCTGAAAGTGATGAAAACTGGATGTGGTTTTTTTCAGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGATGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAAACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACGAGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAGCAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCCAACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATATGGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAGATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCCAGCCAATCTATTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAGGTGCAGGAAGCAAAGCATATGCGGTTCTTCGCCCGCCCAAGATCCGGAGGCCTCCTGGTCGTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAAACGAATCGTTCAATGTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGACATTAGATTATTGCTATCATATTGTTTATGT
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| CDS seq | AGGGCCGTCAAGGACATGGCCATTGCTATGCATTTCGAGCTCCGTGTCGTGAAATCTGACCGGAGCCGGTTCATCGCCAAGTGCGCGAGGGAAGGCTGCCCGTGGCGTGTGCATGTGGCAAAGTGCCATGGTGTCCCGACTTTCACTGTACGCACATTGCACGGGGAGCACACGTGCGACGGTGTGCGTGACTTGCATCATCACCAGGCTACCGTTGGTTGGGTTGCTAGGTCCGTTGAGGCAACGCTAAGAGATAACCCACAGTATAAGCCAAAAGAGATATTGCAGGATATCCGAGAGCAGCATGGAGTAGCAGTTTCTTATATGCAGGCATGGCGTGGGAAGGAGAGAAGCATGGCTGCTGTTCATGGCACCCTTGAGGATGGATATCGCTTTCTTCCTGCCTACTGTGAGCAGATTGTACAGACAAATCCTGGCAGTGTTGCAATATACAAAGGGACTGGACCAGATAATAGCTTCCAGCGGCTGTTCGTGTCGTTCCATGCATCTATTCATGGTTTCTTAAATGCATGTAGACCCCTTTTGGAAATTGACAAGGCAGACCTCAAGGGAAAGTATCTTGGGACATTGCTATGTGCGTCAGCTGTTGATGCTGAAAACATGATGTTCCCGCTAGCATTTGGTATTGTTGACGCTGAAAGTGATGAAAACTGGATGTGGTTTTTTTCAGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGATGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAAACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACGAGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAGCAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCCAACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATATGGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAGATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCCAGCCAATCTATTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAGGTGCAGGAAGCAAAGCATATGCGGTTCTTCGCCCGCCCAAGATCCGGAGGCCTCCTGGTCGTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAAACGAATCGTTCAATGTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGA
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| Protein seq | RAVKDMAIAMHFELRVVKSDRSRFIAKCAREGCPWRVHVAKCHGVPTFTVRTLHGEHTCDGVRDLHHHQATVGWVARSVEATLRDNPQYKPKEILQDIREQHGVAVSYMQAWRGKERSMAAVHGTLEDGYRFLPAYCEQIVQTNPGSVAIYKGTGPDNSFQRLFVSFHASIHGFLNACRPLLEIDKADLKGKYLGTLLCASAVDAENMMFPLAFGIVDAESDENWMWFFSELRKMLGVNTDKMPVLTILSERQSQVVEAVEVNFPTAFHGFCLRYVSENFRDEFKNPKLLNIFWSAVYALTAAEFDSKVNDMVQVQDVMPWFQRFPPNLWAVSYFEGIRYGHFNLGITEILYNWAMECHEFPIVQTVEHIKHQLTCWFVERQNLALSYNSILVPSAEKLISEAIADSGCYQVLRANKVEFEIVSSERTNIVDTQARCCSCRRWQIYGIPCAHAVAALLSCGEDPRLYAHECFSIMKYRETYSQPIYSIPDRSQWNLPFSFAQGAGSKAYAVLRPPKIRRPPGRPKMKILKIESLKRPKRIVQCGRCHLLGHSQKKCSLRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0595300 | OsNip_01t0595300-01 | Chr01 | 23329802 | 23331517 | + | RAP2018-11-26 | ||
| CDS seq | AGGGCCGTCAAGGACATGGCCATTGCTATGCATTTCGAGCTCCGTGTCGTGAAATCTGACCGGAGCCGGTTCATCGCCAAGTGCGCGAGGGAAGGCTGCCCGTGGCGTGTGCATGTGGCAAAGTGCCATGGTGTCCCGACTTTCACTGTACGCACATTGCACGGGGAGCACACGTGCGACGGTGTGCGTGACTTGCATCATCACCAGGCTACCGTTGGTTGGGTTGCTAGGTCCGTTGAGGCAACGCTAAGAGATAACCCACAGTATAAGCCAAAAGAGATATTGCAGGATATCCGAGAGCAGCATGGAGTAGCAGTTTCTTATATGCAGGCATGGCGTGGGAAGGAGAGAAGCATGGCTGCTGTTCATGGCACCCTTGAGGATGGATATCGCTTTCTTCCTGCCTACTGTGAGCAGATTGTACAGACAAATCCTGGCAGTGTTGCAATATACAAAGGGACTGGACCAGATAATAGCTTCCAGCGGCTGTTCGTGTCGTTCCATGCATCTATTCATGGTTTCTTAAATGCATGTAGACCCCTTTTGGAAATTGACAAGGCAGACCTCAAGGGAAAGTATCTTGGGACATTGCTATGTGCGTCAGCTGTTGATGCTGAAAACATGATGTTCCCGCTAGCATTTGGTATTGTTGACGCTGAAAGTGATGAAAACTGGATGTGGTTTTTTTCAGAACTGAGGAAGATGCTTGGAGTTAACACGGATAAGATGCCTGTCTTGACGATACTATCTGAAAGGCAATCACAAGTGGTTGAAGCTGTTGAAGTAAACTTCCCCACTGCTTTTCATGGATTTTGCTTGAGATATGTGAGTGAGAATTTCCGTGACGAGTTCAAAAATCCTAAACTTCTGAACATTTTCTGGAGTGCTGTTTATGCTCTAACAGCAGCAGAATTTGATTCAAAGGTAAATGATATGGTCCAAGTTCAAGATGTCATGCCATGGTTCCAACGTTTCCCACCAAATCTCTGGGCAGTTTCTTACTTTGAGGGTATCCGATATGGCCATTTTAATCTTGGGATAACTGAGATATTATATAACTGGGCCATGGAGTGTCATGAGTTTCCTATAGTGCAAACTGTGGAGCATATCAAACACCAACTGACCTGCTGGTTTGTTGAACGGCAAAACTTGGCGCTATCATACAACTCAATTCTTGTTCCATCAGCCGAGAAACTTATTTCTGAAGCTATCGCTGATTCAGGATGCTATCAAGTCCTTCGAGCAAACAAGGTGGAGTTTGAAATAGTCTCATCTGAGCGAACAAACATTGTGGATACGCAAGCCAGGTGCTGCTCTTGTCGTCGGTGGCAAATATATGGCATTCCATGTGCACATGCTGTTGCTGCACTACTTTCCTGTGGTGAAGATCCTCGCTTGTATGCACATGAATGCTTCAGCATAATGAAGTATCGGGAAACTTACTCCCAGCCAATCTATTCAATTCCAGATAGAAGCCAATGGAACCTCCCGTTTTCTTTTGCACAAGGTGCAGGAAGCAAAGCATATGCGGTTCTTCGCCCGCCCAAGATCCGGAGGCCTCCTGGTCGTCCCAAAATGAAGATTCTTAAGATAGAAAGCTTGAAACGGCCAAAACGAATCGTTCAATGTGGCCGATGTCATCTTCTTGGACATTCTCAAAAGAAGTGTTCGTTACGAAACTGA
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| Protein seq | RAVKDMAIAMHFELRVVKSDRSRFIAKCAREGCPWRVHVAKCHGVPTFTVRTLHGEHTCDGVRDLHHHQATVGWVARSVEATLRDNPQYKPKEILQDIREQHGVAVSYMQAWRGKERSMAAVHGTLEDGYRFLPAYCEQIVQTNPGSVAIYKGTGPDNSFQRLFVSFHASIHGFLNACRPLLEIDKADLKGKYLGTLLCASAVDAENMMFPLAFGIVDAESDENWMWFFSELRKMLGVNTDKMPVLTILSERQSQVVEAVEVNFPTAFHGFCLRYVSENFRDEFKNPKLLNIFWSAVYALTAAEFDSKVNDMVQVQDVMPWFQRFPPNLWAVSYFEGIRYGHFNLGITEILYNWAMECHEFPIVQTVEHIKHQLTCWFVERQNLALSYNSILVPSAEKLISEAIADSGCYQVLRANKVEFEIVSSERTNIVDTQARCCSCRRWQIYGIPCAHAVAALLSCGEDPRLYAHECFSIMKYRETYSQPIYSIPDRSQWNLPFSFAQGAGSKAYAVLRPPKIRRPPGRPKMKILKIESLKRPKRIVQCGRCHLLGHSQKKCSLRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.916307 | 0.456079 | 1.496882 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41210 | RBH | 0.462024 | 0.353670 | 0.290922 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0595300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023890 | RBH | 0.308925 | 2.660550 | 3.113885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023470 | RBH | 0.115423 | 0.000000 | 0.938548 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023790 | RBH | 0.267439 | 0.0 | 0.483934 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023200 | RBH | 0.000000 | 0.064466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022900 | RBH | 0.000000 | 13.148704 | 3.219382 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0390600 | RBH | 2.285967 | 4.6174855 | 3.9666775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022830 | RBH | 0.089217 | 0.090601 | 0.469352 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0379100 | RBH | 3.4513905 | 3.398939 | 8.9949355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022860 | RBH | 0.000000 | 0.056177 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023050 | RBH | 3.299342 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023060 | RBH | 0.529715 | 0.227037 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022910 | RBH | 0.0 | 1.276759 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023190 | RBH | 0.0 | 1.635728 | 1.304630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022850 | RBH | 0.633314 | 7.158085 | 3.657980 |
