Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0515500 | OGI:01093790 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:32914012-32914349 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACCGGATGGAATTTGCTGGGATTGCTTTGAATTCGTGCACGACGCCGTCGATCTCGATGAGGCTGCAGCCAGGGACCTTGTCGATCTCGCTTCTCCTCATCTGCCTCCTCACCTTGACCGCCTCACCATGCCGGCCATTCAACGCGAACGCGTACGTGTTCGACATGCGTCAGCGTCGGCCACGCGCCGTCGCATCACCCGCTCGGCGCGCTCGACGTCGCCATGCGCGCGGCAGGCGGCGAGCAGCGCGATGAGCTCCTCTGCCTCGTCTAGTCTCCCGGCGCGGCTGAGCATATCGGCGACGCAGCCGTAGTGCTCGATGCGAGGTTCCGGCAT |
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| CDS seq | ATGCCGGAACCTCGCATCGAGCACTACGGCTGCGTCGCCGATATGCTCAGCCGCGCCGGGAGACTAGACGAGGCAGAGGAGCTCATCGCGCTGCTCGCCGCCTGCCGCGCGCATGGCGACGTCGAGCGCGCCGAGCGGGCGGTCAAGGTGAGGAGGCAGATGAGGAGAAGCGAGATCGACAAGGTCCCTGGCTGCAGCCTCATCGAGATCGACGGCGTCGTGCACGAATTCAAAGCAATCCCAGCAAATTCCATCCGGTAA |
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| Protein seq | MPEPRIEHYGCVADMLSRAGRLDEAEELIALLAACRAHGDVERAERAVKVRRQMRRSEIDKVPGCSLIEIDGVVHEFKAIPANSIR |
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| Function | Pentatricopeptide repeat-containing protein At5g48910 [UniProtKB/Swiss-Prot:Q9FI80] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0515500 | OsMH63_01T0515500.1 | Chr01 | 32914012 | 32914349 | - | maker | ||
| CDS seq | ATGCCGGAACCTCGCATCGAGCACTACGGCTGCGTCGCCGATATGCTCAGCCGCGCCGGGAGACTAGACGAGGCAGAGGAGCTCATCGCGCTGCTCGCCGCCTGCCGCGCGCATGGCGACGTCGAGCGCGCCGAGCGGGCGGTCAAGGTGAGGAGGCAGATGAGGAGAAGCGAGATCGACAAGGTCCCTGGCTGCAGCCTCATCGAGATCGACGGCGTCGTGCACGAATTCAAAGCAATCCCAGCAAATTCCATCCGGTAA
More
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| Protein seq | MPEPRIEHYGCVADMLSRAGRLDEAEELIALLAACRAHGDVERAERAVKVRRQMRRSEIDKVPGCSLIEIDGVVHEFKAIPANSIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.067221 | 0.4448975 | 0.144964 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0600400 | RBH | 2.419759 | 2.017012 | 1.303348 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g51790 | SBH | 0.078360 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0819800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033210 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032710 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033150 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032420 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0011800 | SBH | 1.758239 | 0.3510365 | 2.2534395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031880 | RBH | 0.0 | 0.0 | 0.329616 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0509300 | RBH | 0.1036825 | 0.662548 | 0.542317 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032070 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032140 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032710 | RBH | 0.0 | 0.0 | 0.803111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032350 | RBH | 0.0 | 0.0 | 0.0 |
