Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0600400 | OGI:01093790 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:23582624-23585981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTTTGAGGTGTTGCACTAGCTTGATGGACTTGAGGTTTGGTTGTCAAGTTCATGCATGTGTTCTTAAAAGTGGGTTTCAAGGAGATTATGATGTTTCAAAAATGCTTCTTGACATGTATGTGCAAGCTGGGTGCTTTACAAATGCACGCTTGGTATTTGACCGACTGAAAGAAAGAGATGTGTTCTCATGGACAGTTGTTATGTCAACATATGCTAAAACTGATGAAGGTGAGAAGGCAATAGAATGCTTCCGCTCAATGTTGCGAGAAAACAAAAGGCCTAATGATGCCACATTAGCTACCTCGCTAAGTGTTTGTTCTGATTTGGCGTGCTTGGGCAGTGGCCTCCAGCTGCATTCATATACCATCAAATCAGGATGGAACAGTTCAGTTGTTTCCAGTGCTTTAGTTGACATGTATGTGAAGTGCGGGAACTTAGCAGATGCTGAGATGCTATTTGACGAGTCAGACACACATGACTTAGTTGAATGGAATACAATCATCTGTGGTTATGCTCAACATGGTCATGGGTATAAGGCATTGGAAGCCTTCCAAGAGATGATAGATGAGGGGAATGTACCTGATGAGATAACATTTGTGGGTGTCCTCTCAGCTTGTAGCCATGCAGGATTACTTGATGAGGGAAGGAGGTACTTCAAATTGCTGAGTAGTGTGTATGGAATTACTCCTACACTGGAACACTATGCTTGCATGGTTGATATTCTGGCCAAGGCTGGAAAACTAGCTGAGGCTGAATCTCTTATTAATGAGATGCCATTGACCCCAGATGCATCCTTATGGAAGACCATTCTTGGAGCATGTAGGATGCATGGAAACATTGAGATTGCTGAGCGAGCAGCAGAAAAATTGTTTGAGTCACAACCAGATGATATATCTTCTTGCATATTGTTGTCTAACATTTATGCGGATTTAAAAAGGTGGAATGATGTTGCTAAACTTAGGAGTATGCTAGTAGATCGTGGAGTAAAGAAGGAACCAGGGTGCAGCTGGATTGAAATCAATGGGAAGTTACATGTTTTCCTGTCACAAGATGGGTGCGCTAAATACTAAAATTTGAGTGGTGTATTTCACCCATCTTGGTCCTGCAATCTGAAATGTCAATGCAGTCACAGGCCAGAAAACCGGTTCCAGGTATTATCTAGTTCTGATGAATCTTTTTTAAGAGAATTATCATTGTACATGATGCGTGTTCAGTATCCAATCTACATAACTCTGCTAATTGGTGAACTGTTTTATCTGATTTAAACAGGCTAATCTTAGGGTAAACTATACTGCTGGAAACGTAGATTTGTCTGAAGACTTATATAGTTGCCCACTTAACTGGCAGTAACTCAGTAAGTCTCAATCCATATAGTTCAATCTCATGCTATCCTTCACTTTCAGCAAATCTATCTGTTAAATCATTGCATCCTTTTTATTACAGCACATATCAGGATAAATGCAGACTGAGGAGAGTTCCTTAGTCGAGGCATATGGAAATGGTAAGGCAATATTGCCTGCCATTGTGAGTAAAGAATTGGTTACAGATTAATGTGGCACACGAAGAGCCTGTCCTACTTCAGTGGATACTGGATTGCTCATATCACATTTATATTCAAATTGGGATGGTTGTGCAGGTGGGGTGATCAACTTGTTGACCAACTTAAGTAAGGTCTGTTCGAGTTCCTCGCCATTATTCCATGGATGAACCTCGGCCTTGAGAAGCTGTTTGTTGCTGCTGATGAGATTCCAGAGGGGGTATTTCTCCTTTGGCATGACATAGTCCCCTTCCCCTAGCTTAAGGGAGGGGCAATAATCTCCTCTGCCATCACCAATGTAGATGAAATGCCTTTTACCATTGGCCGTCGCCTGAATCCTCTCAATTATCTTGCCCTGCACATGATAAAGCTACACTTTAGCGGGGGACCATGCATGCTTTCCATTATTCATATCCCTCTTCATCTGAATAAATGCACTAAGATTTTAGCGCAAAGAAACTTTAATACTTATAATTGTTGAACAATGCAATATTCTTATTTGTTATGTGTAAGATTCAGATTGCATAATCCATCACACTCTTTGCTTTATCCATGATCTATCTATACTGTTTCTTTTGGACAGATGATGCTGTTTCTTTTGTCTCCATCAGCCACGTGCATCGGGGCGGACGCGCTAAAGGCTGACATGAAAAATGTGAACTGACCTGTCAATCTGCTGGTGTCCTACTGTCCATACCTTGCACATGTTCTCGGGGCAGAGGCTGCATCCATGGGGCGAGCTGTCGTCGGGGTCGTGGAACGGCGAGATCCTCAGCCTGCCGTTGCCGTCGACGCGCGCCGGGTTCGTGCTGATCTCCGAGAAGCATCCGAGGACGCCGTGGTGCTCCAGCACGGTCTCGATGAAGAAGGCGTTGGCGTCGCTCGCCACCCTCAAATCACACCTGCAACAAACAACACAACAGGTGGAACACAACCACCACCACCACCAAAGATTATCCATGGCGCCATCAGAGCTTTAGAGGTGGATGGATTGATCATTGATGGTGCGGTACCCTAATGCCGAGGCCGTGGTGATGGCGGAGAGGACGTGGGCGTCGAGGGGGGCGCTCTTGAGGCAGTCGCGGATGTCGTCGGCCGACCTCCCCTGGGCGTGCAGCTCCACCATCATCCTGTCCTGGAAGAAGCCACCCATCCTCGCAGGTTCAATCTATGCATGTTCTTGTGTTCTGTGTGTGTGTGCGCGCGCAGGGTGATCGTACCATGAGGGGGTTCCAGCGCATGGTGGGGCGGAGGCGGCGAAAGGCGTCGGAGGCGCCGAGCTTGGTGATGACCCAGTCGTCGCTGTCCCACTCGATGATGGTCCTGTCGAAGTCGAACACCACCACCACCCCGCCTCCGGCGGCGGCGGCGGCGGCCGTGTCGCCGTCAACGCCAGCGGCCATCTGAGCTGCTCCGACGGTGACCGGGGGAAGGCCGGAAGGGTCAAGATGGAGTCGCGGTCGCCAGACGAACGCACGGCGGCGCCTGACTGACGCCAACGTTTGCAAGCAAATTTCCTTTGTGACTTCTTTGGTGGCGTGGCGTCCGTGTCGGCTTTATATAGGCAAGGCCGCAAGGCACCCCGCACCCCGGTGGTGGTTGTTGGGCCGGTGGCGACTTGTTAGGGTTCTACTCTACGCGTCCACCACACCACCGCAATCCGCAATATGACCTGTCCTGTGCCGTGTTCTCCGTTTGCCCGCGCTGCCGTCTCCAGGCTGACTTGCCTGCCTCCCTCCTCCTTACACATGTTTGCTCTCTGATTCTGTATCCCATGGTACCATTAATTAGTAGATCGATCGTGGTCATCGATTTTTAGT
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| CDS seq | ATTTTGAGGTGTTGCACTAGCTTGATGGACTTGAGGTTTGGTTGTCAAGTTCATGCATGTGTTCTTAAAAGTGGGTTTCAAGGAGATTATGATGTTTCAAAAATGCTTCTTGACATGTATGTGCAAGCTGGGTGCTTTACAAATGCACGCTTGGTATTTGACCGACTGAAAGAAAGAGATGTGTTCTCATGGACAGTTGTTATGTCAACATATGCTAAAACTGATGAAGGTGAGAAGGCAATAGAATGCTTCCGCTCAATGTTGCGAGAAAACAAAAGGCCTAATGATGCCACATTAGCTACCTCGCTAAGTGTTTGTTCTGATTTGGCGTGCTTGGGCAGTGGCCTCCAGCTGCATTCATATACCATCAAATCAGGATGGAACAGTTCAGTTGTTTCCAGTGCTTTAGTTGACATGTATGTGAAGTGCGGGAACTTAGCAGATGCTGAGATGCTATTTGACGAGTCAGACACACATGACTTAGTTGAATGGAATACAATCATCTGTGGTTATGCTCAACATGGTCATGGGTATAAGGCATTGGAAGCCTTCCAAGAGATGATAGATGAGGGGAATGTACCTGATGAGATAACATTTGTGGGTGTCCTCTCAGCTTGTAGCCATGCAGGATTACTTGATGAGGGAAGGAGGTACTTCAAATTGCTGAGTAGTGTGTATGGAATTACTCCTACACTGGAACACTATGCTTGCATGGTTGATATTCTGGCCAAGGCTGGAAAACTAGCTGAGGCTGAATCTCTTATTAATGAGATGCCATTGACCCCAGATGCATCCTTATGGAAGACCATTCTTGGAGCATGTAGGATGCATGGAAACATTGAGATTGCTGAGCGAGCAGCAGAAAAATTGTTTGAGTCACAACCAGATGATATATCTTCTTGCATATTGTTGTCTAACATTTATGCGGATTTAAAAAGGTGGAATGATGTTGCTAAACTTAGGAGTATGCTAGTAGATCGTGGAGTAAAGAAGGAACCAGGGTGCAGCTGGATTGAAATCAATGGGAAGTTACATGTTTTCCTGTCACAAGATGGGTGCGCTAAATACTAA
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| Protein seq | ILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVFLSQDGCAKY |
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| Function | Putative pentatricopeptide repeat-containing protein At1g68930 [UniProtKB/Swiss-Prot:Q9CAA8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0600400 | OsNip_01t0600400-01 | Chr01 | 23582624 | 23585981 | + | RAP2018-11-26 | ||
| CDS seq | ATTTTGAGGTGTTGCACTAGCTTGATGGACTTGAGGTTTGGTTGTCAAGTTCATGCATGTGTTCTTAAAAGTGGGTTTCAAGGAGATTATGATGTTTCAAAAATGCTTCTTGACATGTATGTGCAAGCTGGGTGCTTTACAAATGCACGCTTGGTATTTGACCGACTGAAAGAAAGAGATGTGTTCTCATGGACAGTTGTTATGTCAACATATGCTAAAACTGATGAAGGTGAGAAGGCAATAGAATGCTTCCGCTCAATGTTGCGAGAAAACAAAAGGCCTAATGATGCCACATTAGCTACCTCGCTAAGTGTTTGTTCTGATTTGGCGTGCTTGGGCAGTGGCCTCCAGCTGCATTCATATACCATCAAATCAGGATGGAACAGTTCAGTTGTTTCCAGTGCTTTAGTTGACATGTATGTGAAGTGCGGGAACTTAGCAGATGCTGAGATGCTATTTGACGAGTCAGACACACATGACTTAGTTGAATGGAATACAATCATCTGTGGTTATGCTCAACATGGTCATGGGTATAAGGCATTGGAAGCCTTCCAAGAGATGATAGATGAGGGGAATGTACCTGATGAGATAACATTTGTGGGTGTCCTCTCAGCTTGTAGCCATGCAGGATTACTTGATGAGGGAAGGAGGTACTTCAAATTGCTGAGTAGTGTGTATGGAATTACTCCTACACTGGAACACTATGCTTGCATGGTTGATATTCTGGCCAAGGCTGGAAAACTAGCTGAGGCTGAATCTCTTATTAATGAGATGCCATTGACCCCAGATGCATCCTTATGGAAGACCATTCTTGGAGCATGTAGGATGCATGGAAACATTGAGATTGCTGAGCGAGCAGCAGAAAAATTGTTTGAGTCACAACCAGATGATATATCTTCTTGCATATTGTTGTCTAACATTTATGCGGATTTAAAAAGGTGGAATGATGTTGCTAAACTTAGGAGTATGCTAGTAGATCGTGGAGTAAAGAAGGAACCAGGGTGCAGCTGGATTGAAATCAATGGGAAGTTACATGTTTTCCTGTCACAAGATGGGTGCGCTAAATACTAA
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| Protein seq | ILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVFLSQDGCAKY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.419759 | 2.017012 | 1.303348 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41650 | RBH | 1.438992 | 1.822118 | 0.354289 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0600400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024200 | RBH | 0.054968 | 0.0 | 0.743896 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023780 | RBH | 0.130515 | 0.844190 | 0.791482 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024110 | RBH | 0.975947 | 0.972865 | 2.647689 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023460 | RBH | 0.089107 | 0.023114 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023230 | RBH | 4.119583 | 0.800810 | 4.901930 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0515500 | RBH | 0.067221 | 0.4448975 | 0.144964 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023140 | RBH | 0.264517 | 0.0 | 0.402691 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0383200 | RBH | 2.343706 | 3.7650785 | 7.0748225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023140 | RBH | 0.393105 | 2.367584 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023380 | RBH | 3.686258 | 4.948467 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023380 | RBH | 0.544663 | 0.374752 | 0.196229 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023260 | RBH | 0.138793 | 0.543367 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023480 | RBH | 0.559023 | 0.0 | 0.556180 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023190 | RBH | 2.219184 | 5.553513 | 3.111578 |
