Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0500400 | OGI:01090930 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:32000662-32002907 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCTGAGAAGCTTTGTGCTTTATTGAAAGTTTTCTATGAAGCTAATGTTGCAGTATCTGGTACGTTGTACCCAACTTCAACATGCTATTTTCATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTAGGACGCTCAATACTTGCAAATATGTTTCCCGATTATTTTTGATCCAAGGTATAAGTACAAATTCATTGAGTTTCGTTTGAAGTCTGCATTTGGAGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTTTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGCAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACATGATGTTTTGGCTATTCCAGCAACATCAGTGGCATCAGAAGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTATTTAAATTGAGATTCGTTTGAATTAACTTGGCTATTCTATATTTTTGTATAGTTGTATACTACACCACTAACATCATTGTTTCTTTTTTATTAACATCCAACAGTCCAGCATGTACTCTTTTTTATTAACTCCATTGTTTTTTCCTATACAGGTGAAAATGCCTATACACCTCTAGTAACATGTAGTACCAGCACAACAACCAGCAGCAGGTTATATATCTCACTATCCTCGATAATTGCTTGTTATTGTCAATTATGTCCTTTAATTCATATTTTGGATGCATTCTTAATTGATTATGTCCTTTAATTCATATTTTGGATGCATTCTTAATTGATGAAACTTAGTACATATTTACTCCATTCTACAATATGGAATAACGTTTTGATCAGTCGGTTGATGAATTCATTTCTAATTTTCGATTAGTAGTTTCTCTGCTCTCACTTTATTAAATTTAATGTGTTGAAGGTAATATAGAAAAAGACCGGAAGAGCTCATGGAGTTGGAAGCAGTTGTTTGTCACTTTGTCAATTGGGACAGTTGGTTTATCATGAAGAGAAAATACATCATCATCACTCTTTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACAGCGTTAGCACGCGCATCCGTTTTCTTGCTGGCCGAGTTAATAAAAAAGAAATCTCTCATAATTAGGGATGAAGCACCAATGTAACTTTAGTCATGATGTTGAAGGAAAAGAATGGTGTTCTTATTCAGTACTATACTTGTTATGTCATTGAAAAAGAATACTTTCACGTGAAAATAATACAGTTTTCATGTGCTAAATTTGGGATATGGAGTAGTTATGTGCTTGTGTGATTGATGAACCTAATTAAACAGAGATGTGCACATTGTGGGCTGTCCAGCGGTGCCCGTCGGGCTGAGCAATCCCGCCAAGCCGTGCGGGGCGGGCTGCTGTTTGCCCGCACATGCAGTTTGCGGCTGGTGTGGGGTGGGGCGGGACGGCCCACAACCCATCCCACTTGCAATCCTGACGATGATGCATCATGATACATCAGCATATCTCAGAACAGTTGCCAACAAGCTGAAAGAGATCTTGGGGGTATGTTCATCTTTGGGCCTTCACTAATACTGTCATTTGTTCAATTCCCACAACTGAATGATCTTATTTGGTTTTCGCATCGAAATACACGTGGTGCACTTATTCTGAAAATAAGCTGTGTATGGATTCTATTCTGAAAGTAAGCTGTGAAGCGATTTGCAGATACAATTGCCTAAGGGCTAAATTGATAACTCTATGTGCAATATCTGCTCAGTGTTTCAGCCGCTCAGCAGCAGCGTGGTTATACAGTACTACTATATCGATTGCGAGCTTCTTTGA
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| CDS seq | ATGGCTGAGAAGCTTTGTGCTTTATTGAAAGTTTTCTATGAAGCTAATGTTGCAGTATCTGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTTTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGCAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACATGATGTTTTGGCTATTCCAGCAACATCAGTGGCATCAGAAGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTGAAAATGCCTATACACCTCTAGTAACATGTAGTACCAGCACAACAACCAGCAGCAGAGATGTGCACATTGTGGGCTGTCCAGCGGTGCCCGTCGGGCTGAGCAATCCCGCCAAGCCGTGCGGGGCGGGCTGCTGTTTGCCCGCACATGCAGTTTGCGGCTGGTGTGGGGTGGGGCGGGACGGCCCACAACCCATCCCACTTGCAATCCTGACGATGATGCATCATGATACATCAGCATATCTCAGAACAGTTGCCAACAAGCTGAAAGAGATCTTGGGGCCGCTCAGCAGCAGCGTGGTTATACAGTACTACTATATCGATTGCGAGCTTCTTTGA
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| Protein seq | MAEKLCALLKVFYEANVAVSAAATPYLKEIKSNMQKLFDEYFAKYGGSNNINSQPETSVEQNVDASNQFADWRQFLHDKSRSKVKSELSRYLADMPQEGDFQDGHDFDILNWWMVNKTKYPVISRMAHDVLAIPATSVASEAAFSTGERIISDYRSRLSSSTVEALICLQDWMRAEGLGDFFARDLAESDDQNVQHSGENAYTPLVTCSTSTTTSSRDVHIVGCPAVPVGLSNPAKPCGAGCCLPAHAVCGWCGVGRDGPQPIPLAILTMMHHDTSAYLRTVANKLKEILGPLSSSVVIQYYYIDCELL |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 1 [UniProtKB/Swiss-Prot:B9FJG3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0500400 | OsMH63_01T0500400.1 | Chr01 | 32000662 | 32002907 | + | maker | ||
| CDS seq | ATGGCTGAGAAGCTTTGTGCTTTATTGAAAGTTTTCTATGAAGCTAATGTTGCAGTATCTGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTTTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGCAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACATGATGTTTTGGCTATTCCAGCAACATCAGTGGCATCAGAAGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTGAAAATGCCTATACACCTCTAGTAACATGTAGTACCAGCACAACAACCAGCAGCAGAGATGTGCACATTGTGGGCTGTCCAGCGGTGCCCGTCGGGCTGAGCAATCCCGCCAAGCCGTGCGGGGCGGGCTGCTGTTTGCCCGCACATGCAGTTTGCGGCTGGTGTGGGGTGGGGCGGGACGGCCCACAACCCATCCCACTTGCAATCCTGACGATGATGCATCATGATACATCAGCATATCTCAGAACAGTTGCCAACAAGCTGAAAGAGATCTTGGGGCCGCTCAGCAGCAGCGTGGTTATACAGTACTACTATATCGATTGCGAGCTTCTTTGA
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| Protein seq | MAEKLCALLKVFYEANVAVSAAATPYLKEIKSNMQKLFDEYFAKYGGSNNINSQPETSVEQNVDASNQFADWRQFLHDKSRSKVKSELSRYLADMPQEGDFQDGHDFDILNWWMVNKTKYPVISRMAHDVLAIPATSVASEAAFSTGERIISDYRSRLSSSTVEALICLQDWMRAEGLGDFFARDLAESDDQNVQHSGENAYTPLVTCSTSTTTSSRDVHIVGCPAVPVGLSNPAKPCGAGCCLPAHAVCGWCGVGRDGPQPIPLAILTMMHHDTSAYLRTVANKLKEILGPLSSSVVIQYYYIDCELL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.1711645 | 0.785748 | 0.5830695 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0698300 | SBH | 0.749589 | 0.867366 | 1.800701 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43010 | SBH | 0.084548 | 0.107881 | 0.144865 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0802400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0031990 | SBH | 0.876162 | 39.327877 | 8.816210 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031510 | SBH | 0.441480 | 7.090747 | 3.886050 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030290 | SBH | 2.456088 | 9.163258 | 11.191405 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030850 | SBH | 10.645543 | 20.742016 | 13.743395 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028951 | SBH | 0.108553 | 0.431461 | 0.467108 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0492800 | RBH | 0.2501715 | 1.59472 | 1.1322495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030820 | SBH | 0.313914 | 0.193597 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030850 | SBH | 1.896610 | 6.681996 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031050 | SBH | 10.641765 | 63.883244 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031000 | SBH | 0.683254 | 25.985268 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031450 | SBH | 0.536951 | 8.121812 | 2.572074 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031100 | SBH | 0.572876 | 37.041027 | 26.103643 |
