Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os01g0802400 | OGI:01113770 | 3/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr01:33990770-33992873 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGCTACACTACAGAGAGCTTGGAGCCAGGAGGCCTCGTTACTTCTTTAGCCATGGATCTCAGCTACAGTATAGAGAGCAGCAGTGTAGACACACGTGCAGACAATTAATTCAAAACAGAAATATTAAAAGAACATCATTGCTTGCTGAAACACTGAAAATTGGGCAAAAACAAGAAAATGAAACAAAAAAAATACTCAGAATGATACGCATCGCATTGTTTGTTAGCTGATCCAGCACTGAAATGAATACCAGAAGACTAATGATGTCATATAATTACAATTAAGTCAATTGCTCACTACTACAGCAATAATAAGGGCCATAATAAGGTTTATATCTTCAACAAAAACTACCAAAACATCATCTATGCCTTGATCCATATGCAGTTGTAGATAATCTGGAAGAGAAAGAAGCCATCAGAAATTTATATTTCAGAAATAACATTGAAAGATTACAAGTTGAATATTATTATTTCTATAAGATATGACTAGCATGAGTTAGTGGACACACTAGTAAGAATGAAGAATGAATCCATCCATCCCCACTATTCAACTAAATATCTATACTACTATATACAACCACAAGGACTTTCAAGAAATGGAAAAAAAAACAGAGAGGAAGAAAACAAGGTTGAGAGCCCCAAAATTCTGCAGCCAGAATCAACATAGTAGGATACAACATATCATATCAAACAATTTTGCAAGAGAAAGAAAAGATTTTTCTCTATTTCTACCAAGTACTCTACTAACTCTTCCTAAAAAAAAGTACTCTACTAACTGCTGACCTAATTAGCTCATGGAAGCTCAAATCATGGACTAGAGAACACCCTGAAGCCCTGAACTAATCTGAACCCTTTTGAGTACAAAACAAAACATTTGGCCTGAGCAGCCTCATCAAGAGGAGAAATTGAGCGGATTGATCTGAGCTGAGCACATCAAACAGAAAGAAAAGATTCAGAGACAGAGAGTTAGAGCTGAAGATGTTACCTGGCAGAGGATGACAGAGGCCTGGTTGGGGCCTTTTTTGCCCCTCTGGGAGAAGAGAGAGGCCACCTTCCTTGCTTATCCTTCACATACACAATGCTCTCATCTATCTCCTGAACATGCTCTAGCTGCTCAAATAAGAATATATACAAGTAAGGATACAACTAATAGATATAAAAGGCATTGCAAGGTGTTACAAATTCCGCCTAACATTTCACCAACTGATGAACAAAAAACAATATTAAGTTACTGAGCACAGGGACCCCACCATTGTAAAAAAAAACAGCCATCATACCAAACCTTCTTCACAAAACATCATATGGTCAGTACTCAGTACGAACCTAGATCAAAGAAAATTTGGCACAAATATTAGTAATACTGGTGGGCACTCAGACAAATTAATCTAGATTTTGTGACTAATCAAACAATATAAAATGAAAACACATCTACAATTACTATTTGTATGGCACAGACCACAAAGTCTGAGACGAAATACAAGGCGTGAGATATTATACCTTTAATCCCCTTGTTTTTTGGCTCTATGTAGCCAATCTTTTGCACAAACAAGTGCCTCGAGCATCTCTGGTGTCAATGAGCTTCTTGTGTCTCCAAGAATCCTTCCTCCACTGCTGAAAGCGGACTCTGAGGGCACGGTGCTAAGTGGAATTGCAAGAAAGTCTCGAGCCATAATTGCCAACACAGGAAACTTTTTGGAATTTTTCTTCCACCATGCCAAAACATCAAAATCCTCACTATCATCCTCACATACTTCTTCTAAATATGTATCAATCTCTGACTTCTGAGTACGTGCAACCTTCCGGTTTGACTTGAAGAGGGTGAATTCATGCTCTAGCTTTCTTTTTCCCAAAACAGGTGAGCCTACAACACTAACTCTCTCACTAGACTGTGACATGTAGGATACACCCATTTTTCTTGCAATTCCTTCATATACATGAAAGTATGATTTCATCTCCTCTATAATAGAGTCCACTTTACTTTCAACATTAGAACCATGGGGAGACACCTTCTCATAAAAGAAATCCAAATAGTCTCTTTTCCTTCTTGGATCTAACACAGTGGTAATGACAAGTGCCAAATTGAAGTTGTTTGCCAATTTTTCAT
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| CDS seq | GAAAAATTGGCAAACAACTTCAATTTGGCACTTGTCATTACCACTGTGTTAGATCCAAGAAGGAAAAGAGACTATTTGGATTTCTTTTATGAGAAGGTGTCTCCCCATGGTTCTAATGTTGAAAGTAAAGTGGACTCTATTATAGAGGAGATGAAATCATACTTTCATGTATATGAAGGAATTGCAAGAAAAATGGGTGTATCCTACATGTCACAGTCTAGTGAGAGAGTTAGTGTTGTAGGCTCACCTGTTTTGGGAAAAAGAAAGCTAGAGCATGAATTCACCCTCTTCAAGTCAAACCGGAAGGTTGCACGTACTCAGAAGTCAGAGATTGATACATATTTAGAAGAAGTATGTGAGGATGATAGTGAGGATTTTGATGTTTTGGCATGGTGGAAGAAAAATTCCAAAAAGTTTCCTGTGTTGGCAATTATGGCTCGAGACTTTCTTGCAATTCCACTTAGCACCGTGCCCTCAGAGTCCGCTTTCAGCAGTGGAGGAAGGATTCTTGGAGACACAAGAAGCTCATTGACACCAGAGATGCTCGAGGCACTTGTTTGTGCAAAAGATTGGCTACATAGAGCCAAAAAACAAGGGGATTAA
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| Protein seq | EKLANNFNLALVITTVLDPRRKRDYLDFFYEKVSPHGSNVESKVDSIIEEMKSYFHVYEGIARKMGVSYMSQSSERVSVVGSPVLGKRKLEHEFTLFKSNRKVARTQKSEIDTYLEEVCEDDSEDFDVLAWWKKNSKKFPVLAIMARDFLAIPLSTVPSESAFSSGGRILGDTRSSLTPEMLEALVCAKDWLHRAKKQGD |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os01g0802400 | Os01t0802400-00 | Chr01 | 33990770 | 33992873 | - | irgsp1_rep | ||
| CDS seq | GAAAAATTGGCAAACAACTTCAATTTGGCACTTGTCATTACCACTGTGTTAGATCCAAGAAGGAAAAGAGACTATTTGGATTTCTTTTATGAGAAGGTGTCTCCCCATGGTTCTAATGTTGAAAGTAAAGTGGACTCTATTATAGAGGAGATGAAATCATACTTTCATGTATATGAAGGAATTGCAAGAAAAATGGGTGTATCCTACATGTCACAGTCTAGTGAGAGAGTTAGTGTTGTAGGCTCACCTGTTTTGGGAAAAAGAAAGCTAGAGCATGAATTCACCCTCTTCAAGTCAAACCGGAAGGTTGCACGTACTCAGAAGTCAGAGATTGATACATATTTAGAAGAAGTATGTGAGGATGATAGTGAGGATTTTGATGTTTTGGCATGGTGGAAGAAAAATTCCAAAAAGTTTCCTGTGTTGGCAATTATGGCTCGAGACTTTCTTGCAATTCCACTTAGCACCGTGCCCTCAGAGTCCGCTTTCAGCAGTGGAGGAAGGATTCTTGGAGACACAAGAAGCTCATTGACACCAGAGATGCTCGAGGCACTTGTTTGTGCAAAAGATTGGCTACATAGAGCCAAAAAACAAGGGGATTAA
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| Protein seq | EKLANNFNLALVITTVLDPRRKRDYLDFFYEKVSPHGSNVESKVDSIIEEMKSYFHVYEGIARKMGVSYMSQSSERVSVVGSPVLGKRKLEHEFTLFKSNRKVARTQKSEIDTYLEEVCEDDSEDFDVLAWWKKNSKKFPVLAIMARDFLAIPLSTVPSESAFSSGGRILGDTRSSLTPEMLEALVCAKDWLHRAKKQGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0802400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g58830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0344800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018720 | SBH | 1.553418 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0631700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028951 | SBH | 0.108553 | 0.431461 | 0.467108 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0559000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0018740 | SBH | 0.013257 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018660 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018910 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0018690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0018580 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
