Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0120000 | OGI:01023030 | 13/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:7523632-7525553 | ||||||||
| Gene Symbol | CYCA1;1, CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1 | ||||||||||
| DNA seq | CTACAATGAAAAACAATTCTTTACAGTGCTCAAGGGAAAAGTTTCCAGAGAAATAAGGTGTAGACAAGAGTGTATTACCTCGGCCTCGCGCAAGTGCATGTAGATATCAGAAGCAAGAGTAGCACACAACTGCGGATCCTCGTAGTTATTGTCAACATCACAAATTTGGTCGATTTCCATTGGGGAAGGAGCATCCTTTTTCCACTTAGTTTCTGCGAAAGAAACAAGGGATAAGATCAATCAAACATTCTAACAGAATGCACCATATAGCACAAAATTCTAGCCATAACTGCACATTTCAGCAACCAAAACACACCTTCAACATCTCTATCCTCCGAGATATGCAGGTTCTCGTTTGCTCTTCGCTGCAAGGAACCTAGAACTGAGGAGGAATCCCCATTATCAATATACTCAAAGTCTGGGCTTTTCATTGAGTCGCACGTCGACATCGTCTCGTCAACCGAAACTGAATCTCCTGAATGCATAGGGGAGACGAAGCTGCTGCAGGGTACAGTGACAGGTGCAGGTGCAGCAGTTGGAACAATGCTAAGCACTTTAGGAGGAAGGACTGACTCCTGTGGGGCGCTCTCATGGCGGGATATGGCTGGAGCCGGCTTGGTGGAAGCTGATTTCACCGCCGAGACCCGATTCATGCCCACATTGCGGCCACTGGCCAAAGATCCCTTCTTCACAGGTGCAGCCCAGGTAGCTGAATTAAATTTCTGCAGGAGGATTGAAGAAAAGAAATCAATTTAGAACTTATATTTCAATCTGTTCATTTGGGATTCCAGACCACAAGCACGAAAAGGAATAAAAATTTAGAAACATTAGCAGCACGCAAGTGTCATACTACCAATAGAAGATTCCAAAGCAAGCAAACATACAAAACACTTCACGAATACCAAGAAAGCTTTTATTTTGAACTTTTGAAGGTGCCAATAAACCCTCAAGTGAATTTAGCCTGTTGACCTGAATGCTCCCCAAGAAATCAATCAATCAATTAACCATGAAAAGAAACCAGAAAATCAGCAAGAAAAATCTTGTGGATTGGAATAGGAGAATCCTCAAAATCAGCAAGGAAGAATGTGGCAGAGGTCCAAATTTGAATGTGAAGAGCACTGAAAAACCAAAAGGCAAGAATATCTTGGGGATTGGAAGAGGAGAATCGTTTGCAGGCTAAACAAGGAGAAATTGAAGAAATGAAAATCTTGTTGTTGGCTGAAAGAAAGAACTCAAGAAGACGAAATCAAGAAACACGATTTCTTTTTGCTTGAAACCAACAGATCGAGGCGAATCGCGAATGTCCTCCACAAACAAGATGGAAAAAAACAAAAAAAAAATCATACACAGATCGCTTCGGCCATTTCCGCATCAAGCAACTCACTTGTGCCCCAAGATGAACCAAGAAGGAAAAAAAAAACACCCCCAAACCATTCCAACCACCTCACACACCAAAAGATCTCCACCCAAACCGCGCAAAGCAAAGAACAAATCTTGGAGAGAAAAAAAAAAGGAAAAAAGAAGAAGAAGAAGCAGCAAGCGATCCTTCACGTACCGCATTGTTGGCGGCGGCGGCAACGTTGGTGATGTTGCCGAGCGCGACGCGCTTCTTGGCCGCCGCGGCGCCCGCGGCCGCCTTCCCTCCTCCCTCCCCCGCCGCGGGCCGCTTCGCCGCCGACGACGACGAGCGGCGGGAGGCTAGGCTGCTCGACATCAGCCGACGGCAACCACCACCTGAACCCTCCTCCTCCTGCTGCTGCTGCGAGGGTTGCGAGGGCGGCGGCGGCCGGCGGGGATCAGAGGCAGAGGAGGGCGAGGGCTTGGATCCTTTCCTTCCCGACAGAGGAGGGGAGAGCCGGAGAGGAGAGGAGAGGACTCAGAGGAGCGGAGGAGGAGAAGAGAAAGAAAATGGCGACGACTCT
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| CDS seq | ATGTCGAGCAGCCTAGCCTCCCGCCGCTCGTCGTCGTCGGCGGCGAAGCGGCCCGCGGCGGGGGAGGGAGGAGGGAAGGCGGCCGCGGGCGCCGCGGCGGCCAAGAAGCGCGTCGCGCTCGGCAACATCACCAACGTTGCCGCCGCCGCCAACAATGCGAAATTTAATTCAGCTACCTGGGCTGCACCTGTGAAGAAGGGATCTTTGGCCAGTGGCCGCAATGTGGGCATGAATCGGGTCTCGGCGGTGAAATCAGCTTCCACCAAGCCGGCTCCAGCCATATCCCGCCATGAGAGCGCCCCACAGGAGTCAGTCCTTCCTCCTAAAGTGCTTAGCATTGTTCCAACTGCTGCACCTGCACCTGTCACTGTACCCTGCAGCAGCTTCGTCTCCCCTATGCATTCAGGAGATTCAGTTTCGGTTGACGAGACGATGTCGACGTGCGACTCAATGAAAAGCCCAGACTTTGAGTATATTGATAATGGGGATTCCTCCTCAGTTCTAGGTTCCTTGCAGCGAAGAGCAAACGAGAACCTGCATATCTCGGAGGATAGAGATGTTGAAGAAACTAAGTGGAAAAAGGATGCTCCTTCCCCAATGGAAATCGACCAAATTTGTGATGTTGACAATAACTACGAGGATCCGCAGTTGTGTGCTACTCTTGCTTCTGATATCTACATGCACTTGCGCGAGGCCGAGGTAATACACTCTTGTCTACACCTTATTTCTCTGGAAACTTTTCCCTTGAGCACTGTAAAGAATTGTTTTTCATTGTAG
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| Protein seq | MSSSLASRRSSSSAAKRPAAGEGGGKAAAGAAAAKKRVALGNITNVAAAANNAKFNSATWAAPVKKGSLASGRNVGMNRVSAVKSASTKPAPAISRHESAPQESVLPPKVLSIVPTAAPAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPDFEYIDNGDSSSVLGSLQRRANENLHISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAEVIHSCLHLISLETFPLSTVKNCFSL |
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| Function | Cyclin-A1-3 [UniProtKB/Swiss-Prot:Q0INT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0120000 | OsMH63_01T0120000-mRNA-1 | Chr01 | 7523632 | 7525553 | - | maker | ||
| CDS seq | ATGTCGAGCAGCCTAGCCTCCCGCCGCTCGTCGTCGTCGGCGGCGAAGCGGCCCGCGGCGGGGGAGGGAGGAGGGAAGGCGGCCGCGGGCGCCGCGGCGGCCAAGAAGCGCGTCGCGCTCGGCAACATCACCAACGTTGCCGCCGCCGCCAACAATGCGAAATTTAATTCAGCTACCTGGGCTGCACCTGTGAAGAAGGGATCTTTGGCCAGTGGCCGCAATGTGGGCATGAATCGGGTCTCGGCGGTGAAATCAGCTTCCACCAAGCCGGCTCCAGCCATATCCCGCCATGAGAGCGCCCCACAGGAGTCAGTCCTTCCTCCTAAAGTGCTTAGCATTGTTCCAACTGCTGCACCTGCACCTGTCACTGTACCCTGCAGCAGCTTCGTCTCCCCTATGCATTCAGGAGATTCAGTTTCGGTTGACGAGACGATGTCGACGTGCGACTCAATGAAAAGCCCAGACTTTGAGTATATTGATAATGGGGATTCCTCCTCAGTTCTAGGTTCCTTGCAGCGAAGAGCAAACGAGAACCTGCATATCTCGGAGGATAGAGATGTTGAAGAAACTAAGTGGAAAAAGGATGCTCCTTCCCCAATGGAAATCGACCAAATTTGTGATGTTGACAATAACTACGAGGATCCGCAGTTGTGTGCTACTCTTGCTTCTGATATCTACATGCACTTGCGCGAGGCCGAGGTAATACACTCTTGTCTACACCTTATTTCTCTGGAAACTTTTCCCTTGAGCACTGTAAAGAATTGTTTTTCATTGTAG
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| Protein seq | MSSSLASRRSSSSAAKRPAAGEGGGKAAAGAAAAKKRVALGNITNVAAAANNAKFNSATWAAPVKKGSLASGRNVGMNRVSAVKSASTKPAPAISRHESAPQESVLPPKVLSIVPTAAPAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPDFEYIDNGDSSSVLGSLQRRANENLHISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAEVIHSCLHLISLETFPLSTVKNCFSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.8893015 | 1.7789155 | 5.559616 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0233100 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13260 | SBH | 0.0 | 0.000000 | 0.182517 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0233100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009550 | SBH | 0.000000 | 1.321321 | 0.215217 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009190 | SBH | 0.0 | 0.566216 | 0.206938 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009520 | SBH | 0.0 | 3.814291 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009050 | SBH | 0.0 | 0.154185 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009100 | SBH | 1.091347 | 5.510009 | 7.886757 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0161700 | SBH | 0 | 0 | 0.2123115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009110 | RBH | 0.0 | 0.137722 | 0.350029 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0119900 | RBH | 2.126998 | 0.440994 | 21.666849 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009140 | RBH | 0.0 | 3.853404 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009090 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009220 | RBH | 0.0 | 0.284066 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009010 | SBH | 0.000000 | 6.047315 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009160 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009040 | SBH | 0.000000 | 0.000000 | 0.796868 |
