Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_01G0012000 | OGI:01003310 | 1/16 | Minghui 63 | MH63RS3 | HZAU | Chr01:746108-748667 | ||||||||
| Gene Symbol | RLCK4, OsRLCK4 | ||||||||||
| DNA seq | TTATGACAAGTTCGACATCTCCTGCTTAGAGTTCCTTCTCCCTCCAGCCGTCTCTAACAAAAGCATTCCAAAGCTGTAAACATCCGATTTGCTAGATATAGCACCAAAGCTTCGAGATATCATCTCAGGAGCAATATAACCTATTGTACCTCGAGCAGCACTAACTGGCACAAAGCTGTTGTCCCGTGGGCACAGCTTGGCGAGGCCAAAGTCGGCAACTTTTGGGACGAAATTGCTATCGAGAAGAATGTTGTGTGGCTTAATATCAAAATGTAGAATCTGCATATCACACCCCTGATGCAAATAATTTATTCCTCTAGCAATGCCCAATGCGATCTCATTGAGCTTGTCCCAGGAAAAACTCTTCTCGGGGGAGAAGATGAATTTGTCGAGAGATCCGTGGGGCATGTACTCATACACAAGTGCCCTCATTTCCTCTGCACAAAATCCCACCAGACGCACAACATTAACATGATGGATTCTACCAATGGTGGAGACCTCGCTGATGAATTCTTCTCCATTGCAACTGTTGGTCAACATCTTGATGGCAACATAGACATCACCTGGGAGTATGACACCCTTGAATACAGATCCGTAACCACCCTGGCCTAGCTTGTCTCTGAAACGGTTTGTCATCGCAATGATATCTGTGTAGGTGTACCTCGTTGGACCAAGCATCAGCTGCATTCGCAGAAACTTCTCGACTGCATCGATTGTGATCCTTGTTTTCCAGTATTTTTGGGCAAGAAATATCAATATCCCCAATGGCGCCAACACAAACCTGCATATGACTGCATAAAACCAAGTTTTAGGTACATGGTGATGGTGCGTGTTATTATTCTTAGAATGATGCATCGGCGTCATTCACATCTCATGCAGCATAAAACAAATTTATATTAAGCATGTGTAATTGTAAAGTACCAGCGATCCACTTCACGATCCACATGACAAATTGTAGGACGAACCCTGCATAAAATGTTCTTTTCCCACGAAGCATCTTCATCATATAGATTGGTGTCTCAACATAATATGATGTTCTGCCCATTTTGCCCATTATGCATGCCCAAAAGGTGAAGTCAATAAAAAATATGTCCACAATCCGTTTTTTGAGGTGTGCACTACTGAACAACGGTCCTTCACGGAAGCCACTGCGAGGCCGACGACATTGTAGAAAAAATGTCTTAGAACAAAGCAGCACCATGTACCAAGTCTTTGAGATGAGGGTGGGGATTATTTATGGGTGAACTGAAATTGAAGTAAGGTATATTGAAACTCACCGAATCGACTGGTTCAGGCACTCCTCGATTACTTCAAATGAATTCCTATGATCTAACCTAACAGGAAATTTAACTGTGAATCCCTTCCTCATGAAATTAACAAAATCTGCATAATTTTCGGTCCCTGTTGGCATCGCGTCCAGACCACTGACTGGAATCATGGCCAAGTATCCGCAAGAAGGCTCAAGGTTTTCGAATCTAGCATAACCATCTAATGATGTGGTATTCAACACATAAACAAATGAAGAGCTCGTGCTCAGGCAATCCACCTGCATGTACATGCTATTGTTCTTTACTGCCTGTGAACAATTGACAAAGCACGCAGGCCAGGCTCCACCAAGAACCAAATATCTGGTGTAGTGTGGCCCTCGAATCCCCTGAAAGGAAGGAAGGTGATCGGACTGAGGAAGAGGGCAGCTGCTGTTTGTGTCCTGCATGGTGGCGTCGATGACCCAGAAGGATGAATCGGTGTAGTTGATGCTAGTCACATAGTATTTTCTTTTGTTGATCTGGATGGTGGCCTTGCTACTGCTACAATCTAGCTCATATGATGAAACACCGCACCTGTGAGAGTCGCCTCGCTGGCGGAAAGGATGTTTTATATTTTGAAGATTACCGCAACAGAAAGGCTGGCACATATGCCGTCCCTGGACATCTCTGGCGAGAACTGCAAGTATAGCAAAAATGAGTAAGGCTTGCATTGTTATGGTAGTAGAGGAGGATACTGCTAGAGTTGATCAGTCCACAGGATTGGTTAACGAAAACTCGGCTTGCTGCATATATATGATTTTGCTTCTATTTTTTTTTCCTGTTGCTGGTACAGATTGGTCTTGCCCCTTTAGAAATGTATGCATAATTCATAGAAAGGAGCAGAAGAAGAGCCAGTTTTTCAAAGAATGGACTGCATAATATTCATAGAAAGGAACAGAATGTGGACTGCATCATATTCATTTCAGCATGTAACTGATGAGATGGGGCAGGGGTGAGGGGTGGACGGGAGGAAGTCTTTGATCACACTCAGATCAGTAGAACACCCTGTTAGACAATAGCCAGTCAAATTTGGCTTTTGGCGGTCACTGTTTGGTTTATGGGCACAATTATATATCACCCTGGAGGCCTGGACCCATCATTAACAAACTATCAAAGTTTGACTAAACCACTGTGACCAATTTAGTCACTACAAGATGCACGTATGGCATGCTGCCACGTTTAACCAGCCCTCTTATAAATAAGGTTGATCATTAGACAAGCACACTTGCAATATCTTGATTGATTACATTCAT
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| CDS seq | ATGAATGTAATCAATCAAGATATTGCAATTCTCGCCAGAGATGTCCAGGGACGGCATATGTGCCAGCCTTTCTGTTGCGGTAATCTTCAAAATATAAAACATCCTTTCCGCCAGCGAGGCGACTCTCACAGGTGCGGTGTTTCATCATATGAGCTAGATTGTAGCAGTAGCAAGGCCACCATCCAGATCAACAAAAGAAAATACTATGTGACTAGCATCAACTACACCGATTCATCCTTCTGGGTCATCGACGCCACCATGCAGGACACAAACAGCAGCTGCCCTCTTCCTCAGTCCGATCACCTTCCTTCCTTTCAGGGGATTCGAGGGCCACACTACACCAGATATTTGGTTCTTGGTGGAGCCTGGCCTGCGTGCTTTGTCAATTGTTCACAGGCAGTAAAGAACAATAGCATGTACATGCAGGTGGATTGCCTGAGCACGAGCTCTTCATTTGTTTATGTGTTGAATACCACATCATTAGATGGTTATGCTAGATTCGAAAACCTTGAGCCTTCTTGCGGATACTTGGCCATGATTCCAGTCAGTGGTCTGGACGCGATGCCAACAGGGACCGAAAATTATGCAGATTTTGTTAATTTCATGAGGAAGGGATTCACAGTTAAATTTCCTGTTAGGTTAGATCATAGGAATTCATTTGAAGTAATCGAGGAGTGCCTGAACCAGTCGATTCGTGGCTTCCGTGAAGGACCGTTGTTCAGTAGTGCACACCTCAAAAAACGGATTGTGGACATATTTTTTATTGACTTCACCTTTTGGGCATGCATAATGGGCAAAATGGGCAGAACATCATATTATGTTGAGACACCAATCTATATGATGAAGATGCTTCGTGGGAAAAGAACATTTTATGCAGGGTTCGTCCTACAATTTGTCATGTGGATCGTGAAGTGGATCGCTGTCATATGCAGGTTTGTGTTGGCGCCATTGGGGATATTGATATTTCTTGCCCAAAAATACTGGAAAACAAGGATCACAATCGATGCAGTCGAGAAGTTTCTGCGAATGCAGCTGATGCTTGGTCCAACGAGGTACACCTACACAGATATCATTGCGATGACAAACCGTTTCAGAGACAAGCTAGGCCAGGGTGGTTACGGATCTGTATTCAAGGGTGTCATACTCCCAGGTGATGTCTATGTTGCCATCAAGATGTTGACCAACAGTTGCAATGGAGAAGAATTCATCAGCGAGGTCTCCACCATTGGTAGAATCCATCATGTTAATGTTGTGCGTCTGGTGGGATTTTGTGCAGAGGAAATGAGGGCACTTGTGTATGAGTACATGCCCCACGGATCTCTCGACAAATTCATCTTCTCCCCCGAGAAGAGTTTTTCCTGGGACAAGCTCAATGAGATCGCATTGGGCATTGCTAGAGGAATAAATTATTTGCATCAGGGGTGTGATATGCAGATTCTACATTTTGATATTAAGCCACACAACATTCTTCTCGATAGCAATTTCGTCCCAAAAGTTGCCGACTTTGGCCTCGCCAAGCTGTGCCCACGGGACAACAGCTTTGTGCCAGTTAGTGCTGCTCGAGGTACAATAGGTTATATTGCTCCTGAGATGATATCTCGAAGCTTTGGTGCTATATCTAGCAAATCGGATGTTTACAGCTTTGGAATGCTTTTGTTAGAGACGGCTGGAGGGAGAAGGAACTCTAAGCAGGAGATGTCGAACTTGTCATAA
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| Protein seq | MNVINQDIAILARDVQGRHMCQPFCCGNLQNIKHPFRQRGDSHRCGVSSYELDCSSSKATIQINKRKYYVTSINYTDSSFWVIDATMQDTNSSCPLPQSDHLPSFQGIRGPHYTRYLVLGGAWPACFVNCSQAVKNNSMYMQVDCLSTSSSFVYVLNTTSLDGYARFENLEPSCGYLAMIPVSGLDAMPTGTENYADFVNFMRKGFTVKFPVRLDHRNSFEVIEECLNQSIRGFREGPLFSSAHLKKRIVDIFFIDFTFWACIMGKMGRTSYYVETPIYMMKMLRGKRTFYAGFVLQFVMWIVKWIAVICRFVLAPLGILIFLAQKYWKTRITIDAVEKFLRMQLMLGPTRYTYTDIIAMTNRFRDKLGQGGYGSVFKGVILPGDVYVAIKMLTNSCNGEEFISEVSTIGRIHHVNVVRLVGFCAEEMRALVYEYMPHGSLDKFIFSPEKSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAKLCPRDNSFVPVSAARGTIGYIAPEMISRSFGAISSKSDVYSFGMLLLETAGGRRNSKQEMSNLS |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_01G0012000 | OsMH63_01T0012000.1 | Chr01 | 746108 | 748667 | - | maker | ||
| CDS seq | ATGAATGTAATCAATCAAGATATTGCAATTCTCGCCAGAGATGTCCAGGGACGGCATATGTGCCAGCCTTTCTGTTGCGGTAATCTTCAAAATATAAAACATCCTTTCCGCCAGCGAGGCGACTCTCACAGGTGCGGTGTTTCATCATATGAGCTAGATTGTAGCAGTAGCAAGGCCACCATCCAGATCAACAAAAGAAAATACTATGTGACTAGCATCAACTACACCGATTCATCCTTCTGGGTCATCGACGCCACCATGCAGGACACAAACAGCAGCTGCCCTCTTCCTCAGTCCGATCACCTTCCTTCCTTTCAGGGGATTCGAGGGCCACACTACACCAGATATTTGGTTCTTGGTGGAGCCTGGCCTGCGTGCTTTGTCAATTGTTCACAGGCAGTAAAGAACAATAGCATGTACATGCAGGTGGATTGCCTGAGCACGAGCTCTTCATTTGTTTATGTGTTGAATACCACATCATTAGATGGTTATGCTAGATTCGAAAACCTTGAGCCTTCTTGCGGATACTTGGCCATGATTCCAGTCAGTGGTCTGGACGCGATGCCAACAGGGACCGAAAATTATGCAGATTTTGTTAATTTCATGAGGAAGGGATTCACAGTTAAATTTCCTGTTAGGTTAGATCATAGGAATTCATTTGAAGTAATCGAGGAGTGCCTGAACCAGTCGATTCGTGGCTTCCGTGAAGGACCGTTGTTCAGTAGTGCACACCTCAAAAAACGGATTGTGGACATATTTTTTATTGACTTCACCTTTTGGGCATGCATAATGGGCAAAATGGGCAGAACATCATATTATGTTGAGACACCAATCTATATGATGAAGATGCTTCGTGGGAAAAGAACATTTTATGCAGGGTTCGTCCTACAATTTGTCATGTGGATCGTGAAGTGGATCGCTGTCATATGCAGGTTTGTGTTGGCGCCATTGGGGATATTGATATTTCTTGCCCAAAAATACTGGAAAACAAGGATCACAATCGATGCAGTCGAGAAGTTTCTGCGAATGCAGCTGATGCTTGGTCCAACGAGGTACACCTACACAGATATCATTGCGATGACAAACCGTTTCAGAGACAAGCTAGGCCAGGGTGGTTACGGATCTGTATTCAAGGGTGTCATACTCCCAGGTGATGTCTATGTTGCCATCAAGATGTTGACCAACAGTTGCAATGGAGAAGAATTCATCAGCGAGGTCTCCACCATTGGTAGAATCCATCATGTTAATGTTGTGCGTCTGGTGGGATTTTGTGCAGAGGAAATGAGGGCACTTGTGTATGAGTACATGCCCCACGGATCTCTCGACAAATTCATCTTCTCCCCCGAGAAGAGTTTTTCCTGGGACAAGCTCAATGAGATCGCATTGGGCATTGCTAGAGGAATAAATTATTTGCATCAGGGGTGTGATATGCAGATTCTACATTTTGATATTAAGCCACACAACATTCTTCTCGATAGCAATTTCGTCCCAAAAGTTGCCGACTTTGGCCTCGCCAAGCTGTGCCCACGGGACAACAGCTTTGTGCCAGTTAGTGCTGCTCGAGGTACAATAGGTTATATTGCTCCTGAGATGATATCTCGAAGCTTTGGTGCTATATCTAGCAAATCGGATGTTTACAGCTTTGGAATGCTTTTGTTAGAGACGGCTGGAGGGAGAAGGAACTCTAAGCAGGAGATGTCGAACTTGTCATAA
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| Protein seq | MNVINQDIAILARDVQGRHMCQPFCCGNLQNIKHPFRQRGDSHRCGVSSYELDCSSSKATIQINKRKYYVTSINYTDSSFWVIDATMQDTNSSCPLPQSDHLPSFQGIRGPHYTRYLVLGGAWPACFVNCSQAVKNNSMYMQVDCLSTSSSFVYVLNTTSLDGYARFENLEPSCGYLAMIPVSGLDAMPTGTENYADFVNFMRKGFTVKFPVRLDHRNSFEVIEECLNQSIRGFREGPLFSSAHLKKRIVDIFFIDFTFWACIMGKMGRTSYYVETPIYMMKMLRGKRTFYAGFVLQFVMWIVKWIAVICRFVLAPLGILIFLAQKYWKTRITIDAVEKFLRMQLMLGPTRYTYTDIIAMTNRFRDKLGQGGYGSVFKGVILPGDVYVAIKMLTNSCNGEEFISEVSTIGRIHHVNVVRLVGFCAEEMRALVYEYMPHGSLDKFIFSPEKSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDSNFVPKVADFGLAKLCPRDNSFVPVSAARGTIGYIAPEMISRSFGAISSKSDVYSFGMLLLETAGGRRNSKQEMSNLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.2369865 | 0.7474745 | 0.9394585 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0113400 | SBH | 0.872505 | 0.180256 | 1.061968 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02350 | SBH | 0.410104 | 0.604183 | 0.203183 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0113400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001080 | SBH | 0.000000 | 0.656694 | 1.371860 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001070 | SBH | 0.160955 | 0.171025 | 0.792215 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001060 | SBH | 0.269390 | 0.000000 | 3.921971 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001050 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001210 | SBH | 0.172035 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016000 | SBH | 1.6942795 | 5.724617 | 3.7314985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001040 | SBH | 0.000000 | 0.000000 | 0.052850 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001040 | SBH | 0.105931 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001240 | SBH | 1.728759 | 0.531123 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001060 | SBH | 1.753116 | 7.529719 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001190 | SBH | 0.000000 | 0.000000 | 0.057889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001030 | SBH | 0.050461 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001050 | SBH | 0.067232 | 1.837896 | 1.082343 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001140 | SBH | 3.493958 | 2.049984 | 1.707907 |
