Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0004560 | OGI:11051300 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg48:66666-67878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGACTCTACAAAAGAAATGCAAAATCATAGTGATAAATAATTGGCTAACGTTGTTAACAGTTTGGGGTTGGATGTTCGGTGTTTTGAAAGATTGATCAAGATGTTTGGATATGAACAGTAAACCAGAACCAGTAATCGCAAATTCAGTTCAAAATTTCGGACCCCACCGGCAAATCAATATATTGACCGAAATATTCATGTTTTCTCAAATTTTTGTTGGAAGTAGTAAACTAAATAATTACTACATGAAAGTAGTAAACTAAATAATTAGTTTTTCATGTACACACACAGATATATAAATAATCATTACATATGGACTGCATTGATGAAATAATGACTATGGTTGTGTTTAGTTCTCTTCAAACTTCTAACTTTTCTGTCACATCAAATGTTTAGACACATGCATGAAGCATTAAATATGGATGAAAAAAAATCAATTGCACCGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCGTAATTACGCTATGATTTGACAATGTGGTGCTACAGTAAACATTTGCTAATAACGGATTAATCAGGGTTAATAGATTCGTCTTGCAATTTACATGCGGAATCTATAATTTGCTTCGTTATTAGTCTCTGTTTAATACTTCAAATGTATGTTCGTATACGTCAAATTTTTTTTACCAAAACAACTAAACACGGCCTATGTACTTATGTAGTATTGACTTAGTTGGCCGAAATAATTAATTATTACATGCCTACAGAAGAATCAAAGACATGAGAGGGGAGAGACGTTGAAGACGTACTATATGGTCACTAACTAGAAAAAAGGTATTTGCAGGCGAGCAAAAATGGTCTTCTCAGGCAGACCGGCGTTCCGCCCGTAGGCAATCGCCGGTGCTTACGCTTGCCGTTGCAGGTATTAAGGCTCCTCTCGAACACCTCCGTACTGACGCGGTTCGCCTCGTACTCGTACTCATCCACCACATCCTCCGCGTCGTAGGCCAATTCCTTGAGCTCCGTGAGCCGCAGTTTCGCCGACTCCTCCCTGATGATCCAGTGCTCCTCCGCGTCGTGCAGCATGGCGTGGATCCTGCGCATCGTCCTCTCCAGCATCCGGAGGTCTTCCAGGCCCTCGCTTGTTGTCGACGGCGCCGTTGCTACTTGCAGGCTTGCTGGCAGCAAGGACGAGAGCTTGTCAAGTGCCCATTTCACGCTCATGGATGCGAACAATTCAGCCAT
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| CDS seq | ATGGCTGAATTGTTCGCATCCATGAGCGTGAAATGGGCACTTGACAAGCTCTCGTCCTTGCTGCCAGCAAGCCTGCAAGTAGCAACGGCGCCGTCGACAACAAGCGAGGGCCTGGAAGACCTCCGGATGCTGGAGAGGACGATGCGCAGGATCCACGCCATGCTGCACGACGCGGAGGAGCACTGGATCATCAGGGAGGAGTCGGCGAAACTGCGGCTCACGGAGCTCAAGGAATTGGCCTACGACGCGGAGGATGTGGTGGATGAGTACGAAGTCTAA |
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| Protein seq | MAELFASMSVKWALDKLSSLLPASLQVATAPSTTSEGLEDLRMLERTMRRIHAMLHDAEEHWIIREESAKLRLTELKELAYDAEDVVDEYEV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0004560 | OsLima_Ung0004560.01 | ChrUN-Ctg48 | 66666 | 67878 | - | NAM | ||
| CDS seq | ATGGCTGAATTGTTCGCATCCATGAGCGTGAAATGGGCACTTGACAAGCTCTCGTCCTTGCTGCCAGCAAGCCTGCAAGTAGCAACGGCGCCGTCGACAACAAGCGAGGGCCTGGAAGACCTCCGGATGCTGGAGAGGACGATGCGCAGGATCCACGCCATGCTGCACGACGCGGAGGAGCACTGGATCATCAGGGAGGAGTCGGCGAAACTGCGGCTCACGGAGCTCAAGGAATTGGCCTACGACGCGGAGGATGTGGTGGATGAGTACGAAGTCTAA
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| Protein seq | MAELFASMSVKWALDKLSSLLPASLQVATAPSTTSEGLEDLRMLERTMRRIHAMLHDAEEHWIIREESAKLRLTELKELAYDAEDVVDEYEV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492100 | SBH | 0.452033 | 0.992897 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g30050 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014540 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014500 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014430 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014220 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014470 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0271700 | RBH | 0.0044955 | 0.051896 | 0.035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014780 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0285400 | SBH | 0 | 0.009521 | 0.0213635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014670 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014310 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014180 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014490 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014210 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014460 | SBH | 0.679896 | 3.874815 | 1.223284 |
