Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g30050 | OGI:11051300 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:17479444-17483263 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACATCATCCAGAAAATGCAACTGTGCTGCAAGAGCTTTGGGCATTCCGTAATATTCAGTTCCTTAAGGGAGGTGAAGCCGGAAAGCCCATGACAGTACTGCAGATTATCGCTGCTAAACTTGATTTTCCTGAGCAAAGGCAGGCCTTGTGGCTCAAGAGATCTGCATGTCATCAAATTGCAGGTGATTGTTAAGCACTCCAGTGAAGAGAGGTTATTCAGCAGCCTGCACGGCTTGTTATATATCTTTGAATGGACCTCCAAGACGCAATGTGGTGAGTGATGGGAAGGAAGGAAGTTGGTCCAGATTAACGCACCTACAAATGTGTAGTTGACGTAGGCTGGGCGATGCTGGAATCGCAGTGATATTGGGACAATCTGTCACTTGAAAAGAAACCAAGGACAGAAAGGGCGCTACAGGAAGAGACAGTATGTTATCTGCACATCTGATGGAAAGCCTGTGCAAGCGCGGAAATGCACCATCATCCACCCCAGACCACTCTGACCACTCGGGCATCTGCACGAATTTCAGTTTCTTCAGTGCTGGGAAGCCCTTGAAACCATGGCCATGGCTGCAGAACTCCTGTCGGATGTGTTGCAGAAACATCATTTCACGGACATGGAGAAACTGGAGGGACGGTAGCTCACCAAGCGTTGGAAGTCGCTCAGATTTACAGAACAAGAACTTTATTGTTGTCAAGTTGGAGAAGGAAGGCTCACCCAACCAAGAGGGATATTTGGAACTCTCATATCTCTGTATGATCAGTTTTCTTAGGCTGTTATATGGTCGCAAGTTGTCAAGCAGCAGCTCGTGAGACACTGTAATTGCAGGTTCGCTTTAATTTGTACCGTGTTTTCACTGTAATCTGGGCTGTCATCCAAATCAATGGCTCTACTGAAGTCCAAGTGTAAGGACTGAAGGTGCTTTTTATTATGTAGCCAAGCTTCTTTTGCATCCTCCTTGCGATCTAAATCTGCCAGTCCTCTTACTGTCAACTCCTTAATTTTGTTCAAGCTCTTCAGTTCTCCCATGTTACAAATGTTACGACCGATATATAGTTGAGGCAAAGTATGCAGGTTAATTAGGCTGTGAATTCCGTGTAGCTCAAGCCTGTAGTAAGAAATATCGTACCGGTTATCTAGCAGGCATTCACAATGTAAATGGCGTAGTAATTTTGCACTGCCCATGAAGCCCTCCAATGCCTTGCTTAGAAAGAACTCCTTCTCGTAAAAGACAAGAGCTCTCAACTTCTCACAACCGAGGAGCAATGCTTCTGGATTTTCTATATACCCAGATGCTCTGTTCAACACTATGATGGCTCTGAGTGAATGTGAGGCAACTGACATTTCACGCGATATACAATGAATGGACAGGTACCTAACATTTGGTGGAATTTCAATGCATCCATCATCTGCTTCGAGCCTAAAGAACTCATCTGCAACAAGAAAGCATGCAAGATCGTGGATAAGATCATGCATGATGTGAAGCCCTTGAATATCATGCACTTGCAGAAATGAGCGGTCAACTATTTCGTTGAAATATAGTCTTGCGGCACTATTATGTCGAATTGTCGATCACATTGAATTATATCAAGCGATTTCCACAGTCCAAACACCTCGCTTCTATCAATTAAATAGCCTTTGGGAAATAGAGAAAGGGCAACAAAACATCTCTTCAGGTGTATAGGCAAGTGTCTGTAGCTCAATTCCAAGGCTGGTAGAATCTCCTTTTGTGGTGGCTCCAAGTCCCATATGTCACTTTCTAAGACATATCTCCATCTCATTTCATCAGCTTCATAGCACAACATGCTTCCTAATGTTTTGATTGCTAACGGCAAGCCCCTACACTTTACTCCGTACAATAATATTCTTGCCAATCTTATCCAGGTCTGCTGGGGTGTCATCTTGTTGGTCAACAGAAAATGCAGCTTGTTGGAACAATAACCAGCTGTCATCTGAACTTAAGCAGTCTAGGTAGTAGAAAGGCATTGTCTGCACCAACTTTGCCACTGCCTCATTGCGGGTCGTTACCATGATCCTACATACACTTGAAGCAAATAATGGCATGCACAACAACTCCCATGTATCTCTTCGTTCAGTCCATACATCATCTAGGACAAGTAAAAAACTCTTCCCCTGTAGTTTTTTTCCCAGCACCTCCTGAAGATCAGCCAGTTCTGATAGACTGGAGCTCTCCTTTGTCAGCGAAGAGATGATCTTTTGTGTAATGTTCTTGGTATCAAAGTACTCTGACACACAAACCCATGCGCAGAGATCGAAAGATTGGTTCACCCTTGGGTCATTGTACACGAGTTGTGCCAGAGTTGTTTTGCCCACACCCCCCATACCAACAATTGGAAATACAGACATACAACATGCATGCAACGCTGCTGCTTTCTCCGGACTTCATCAGCCTTTCGATAATTATCTCCTTCTCTCGCTCTCTTCCAATAATTCTCTCTTCCACTACAAAAGAGCTGGTTTGCCGCACAGTTTGGAAGTCAGGGACAATCCGCCGATACCCATCATTTTTGGACAGACTAAAACTATCATAGTAATGTTTCATCTCAGTAAACCTCTGTACAACCTTCCTTGCTCTATCAGCCAACTCACTTGGAACTGGAACTACGCCAGGTTTAATGCGGTAGTGCTCGTCATTTACCTTCAGAATAAAACATATATTAGCTAAGAAGGAGATTTACTAATTTAACACTAATTTCTACATGCATTTTCCCATTTTTCAAGACAAAATCATACAGACAACTTACGGTTTGTTTACACAAGTTTTAGATTGGAACGATCAATGTTTTTGCAGTTATATATACTAAACAGTAAATTTAGTTACTTTTCTGAGAGGAAAGTAGTAAACTAAATAATTAGTTTTTCATGTACACACACAGATATATAAATAATCATTACATATGGACTGCATTGATGAAATAATGACTATGGTTGTGTTTAGTTCTCTCCAAACTTCCAACTTTTCCGTCACATCAAATGTTTGGACACATGCATGGAGCATTAAATATGGATGAAAAAAAAATCAATTGCACTGTTTGCATGTAAATTGCGAGACGAATCTTTTGAGCGTAATTACGCTATGATTTGACAATTTGGTGCTACAGTAAACATTTGCTAATAATGGATTAATCAGGGTTAATAGATTCGTCTTGCAATTTACATGTGGAATCTATAATTTGCTTCGTTATTAGTCTCTGTTTAATACTTCAAATGTATGTTCGTATACATCAAATTTTTTTTACCAAAACAACTAAACATGGCCTATGTAATTATGTAGTATTGACTTAGTTGGCCGAAATAATTAATTATTACATGCCTACAGAAGAATCAAAGACATGAGAGGGGAGAGACGTTGAAGACGTACCATATGGTCACTACTAGAAAAAAGGTATTTGCAGGCGGGCAAAAATGGTCTTCCCAGGCAGACCGGCGTTCCGCCCGTAGGCAATCGCCGGTGCTTACGCTTGCCGTTGCAGGTATTAAGGCTCCTCTCGAACACCTCCGTACTGACGCGGTTCGCCTCGTACTCGTACTCATCCACCACATCCTCCGCGTCGTAGGCCAATTCCTTGAGCTCCGTGAGCCGCACTTTCGCCGACTCCTCCCTGATGATCCAGTGCTCCTCCGCGTCGTGCAGCGTGGCGTGGATCCTGCGCATCGTCCTCTCCAGCATCCGGAGGTCTTCCAGGCCCTCGCTTGTCGTCGACGGCGCCGTTGCTACTTGCAGGCTTGCTGGCAGCAAGGACGAGAGCTTGTCAAGTGCCCATTTCACGCTCATGGATGCGAACAATTCAGCCAT
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| CDS seq | ATGGCTGAATTGTTCGCATCCATGAGCGTGAAATGGGCACTTGACAAGCTCTCGTCCTTGCTGCCAGCAAGCCTGCAAGTAGCAACGGCGCCGTCGACGACAAGCGAGGGCCTGGAAGACCTCCGGATGCTGGAGAGGACGATGCGCAGGATCCACGCCACGCTGCACGACGCGGAGGAGCACTGGATCATCAGGGAGGAGTCGGCGAAAGTGCGGCTCACGGAGCTCAAGGAATTGGCCTACGACGCGGAGGATGTGGTGGATGAGTACGAGTACGAGGCGAACCGCGTCAGTACGGAGGTGTTCGAGAGGAGCCTTAATACCTGCAACGGCAAGCGTAAGCACCGGCGATTGCCTACGGGCGGAACGCCGGTCTGCCTGGGAAGACCATTTTTGCCCGCCTGCAAATACCTTTTTTCTAGTAGTGACCATATGGTAAATGACGAGCACTACCGCATTAAACCTGGCGTAGTTCCAGTTCCAAAGTACTTTGATACCAAGAACATTACACAAAAGATCATCTCTTCGCTGACAAAGGAGAGCTCCAGTCTATCAGAACTGGCTGATCTTCAGGAGGTGCTGGGAAAAAAACTACAGGGGAAGAGTTTTTTACTTGTCCTAGATGATGTATGGACTGAACGAAGAGATACATGGGAGTTGTTGTGCATGCCATTATTTGCTTCAAGTGTATGTAGGATCATGGTAACGACCCGCAATGAGGCAGTGGCAAAGTTGGTGCAGACAATGCCTTTCTACTACCTAGACTGCTTAAGTTCAGATGACAGCTGGTTATTGTTCCAACAAGCTGCATTTTCTGTTGACCAACAAGATGACACCCCAGCAGACCTGGATAAGATTGGCAAGAATATTATTGTACGGAATGAGTTCTTTAGGCTCGAAGCAGATGATGGATGCATTGAAATTCCACCAAATGTTAGGTACCTGTCCATTCATTGTATATCGCGTGAAATGTCAGTTGCCTCACATTCACTCAGAGCCATCATAGTGTTGAACAGAGCATCTGGGTATATAGAAAATCCAGAAGCATTGCTCCTCGGTTGTGAGAAGTTGAGAGCTCTTGTCTTTTACGAGAAGGAGTTCTTTCTAAGCAAGGCATTGGAGGGCTTCATGGGCAGTGCAAAATTACTACGCCATTTACATTGTGAATGCCTGCTAGATAACCGCCTAAGAAAACTGATCATACAGAGATATGAGAGTTCCAAATATCCCTCTTGGTTGGGTGAGCCTTCCTTCTCCAACTTGACAACAATAAAGTTCTTGTTCTGTAAATCTGAGCGACTTCCAACGCTTGGTGAGCTACCGTCCCTCCAGTTTCTCCATGTCCGTGAAATGATGTTTCTGCAACACATCCGACAGGAGTTCTGCAGCCATGGCCATGGTTTCAAGGGCTTCCCAGCACTGAAGAAACTGAAATTCGTGCAGATGCCCGAGTGGTCAGAGTGGTCTGGGGTGGATGATGGTGCATTTCCGCGCTTGCACAGGCTTTCCATCAGATGTGCAGATAACATACTGTCTCTTCCTGTAGCGCCCTTTCTGTCCTTGGTTTCTTTTCAAGTGACAGATTGTCCCAATATCACTGCGATTCCAGCATCGCCCAGCCTACGTCAACTACACATTTGTAGATCTCTTGAGCCACAAGGCCTGCCTTTGCTCAGGAAAATCAAGTTTAGCAGCGATAATCTGCAGTACTGTCATGGGCTTTCCGGCTTCACCTCCCTTAAGGAACTGAATATTACGGAATGCCCAAAGCTCTTGCAGCACAGTTGCATTTTCTGGATGATGTGA
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| Protein seq | MAELFASMSVKWALDKLSSLLPASLQVATAPSTTSEGLEDLRMLERTMRRIHATLHDAEEHWIIREESAKVRLTELKELAYDAEDVVDEYEYEANRVSTEVFERSLNTCNGKRKHRRLPTGGTPVCLGRPFLPACKYLFSSSDHMVNDEHYRIKPGVVPVPKYFDTKNITQKIISSLTKESSSLSELADLQEVLGKKLQGKSFLLVLDDVWTERRDTWELLCMPLFASSVCRIMVTTRNEAVAKLVQTMPFYYLDCLSSDDSWLLFQQAAFSVDQQDDTPADLDKIGKNIIVRNEFFRLEADDGCIEIPPNVRYLSIHCISREMSVASHSLRAIIVLNRASGYIENPEALLLGCEKLRALVFYEKEFFLSKALEGFMGSAKLLRHLHCECLLDNRLRKLIIQRYESSKYPSWLGEPSFSNLTTIKFLFCKSERLPTLGELPSLQFLHVREMMFLQHIRQEFCSHGHGFKGFPALKKLKFVQMPEWSEWSGVDDGAFPRLHRLSIRCADNILSLPVAPFLSLVSFQVTDCPNITAIPASPSLRQLHICRSLEPQGLPLLRKIKFSSDNLQYCHGLSGFTSLKELNITECPKLLQHSCIFWMM |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g30050 | LOC_Os11g30050.1 | Chr11 | 17479444 | 17483263 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGAATTGTTCGCATCCATGAGCGTGAAATGGGCACTTGACAAGCTCTCGTCCTTGCTGCCAGCAAGCCTGCAAGTAGCAACGGCGCCGTCGACGACAAGCGAGGGCCTGGAAGACCTCCGGATGCTGGAGAGGACGATGCGCAGGATCCACGCCACGCTGCACGACGCGGAGGAGCACTGGATCATCAGGGAGGAGTCGGCGAAAGTGCGGCTCACGGAGCTCAAGGAATTGGCCTACGACGCGGAGGATGTGGTGGATGAGTACGAGTACGAGGCGAACCGCGTCAGTACGGAGGTGTTCGAGAGGAGCCTTAATACCTGCAACGGCAAGCGTAAGCACCGGCGATTGCCTACGGGCGGAACGCCGGTCTGCCTGGGAAGACCATTTTTGCCCGCCTGCAAATACCTTTTTTCTAGTAGTGACCATATGGTAAATGACGAGCACTACCGCATTAAACCTGGCGTAGTTCCAGTTCCAAAGTACTTTGATACCAAGAACATTACACAAAAGATCATCTCTTCGCTGACAAAGGAGAGCTCCAGTCTATCAGAACTGGCTGATCTTCAGGAGGTGCTGGGAAAAAAACTACAGGGGAAGAGTTTTTTACTTGTCCTAGATGATGTATGGACTGAACGAAGAGATACATGGGAGTTGTTGTGCATGCCATTATTTGCTTCAAGTGTATGTAGGATCATGGTAACGACCCGCAATGAGGCAGTGGCAAAGTTGGTGCAGACAATGCCTTTCTACTACCTAGACTGCTTAAGTTCAGATGACAGCTGGTTATTGTTCCAACAAGCTGCATTTTCTGTTGACCAACAAGATGACACCCCAGCAGACCTGGATAAGATTGGCAAGAATATTATTGTACGGAATGAGTTCTTTAGGCTCGAAGCAGATGATGGATGCATTGAAATTCCACCAAATGTTAGGTACCTGTCCATTCATTGTATATCGCGTGAAATGTCAGTTGCCTCACATTCACTCAGAGCCATCATAGTGTTGAACAGAGCATCTGGGTATATAGAAAATCCAGAAGCATTGCTCCTCGGTTGTGAGAAGTTGAGAGCTCTTGTCTTTTACGAGAAGGAGTTCTTTCTAAGCAAGGCATTGGAGGGCTTCATGGGCAGTGCAAAATTACTACGCCATTTACATTGTGAATGCCTGCTAGATAACCGCCTAAGAAAACTGATCATACAGAGATATGAGAGTTCCAAATATCCCTCTTGGTTGGGTGAGCCTTCCTTCTCCAACTTGACAACAATAAAGTTCTTGTTCTGTAAATCTGAGCGACTTCCAACGCTTGGTGAGCTACCGTCCCTCCAGTTTCTCCATGTCCGTGAAATGATGTTTCTGCAACACATCCGACAGGAGTTCTGCAGCCATGGCCATGGTTTCAAGGGCTTCCCAGCACTGAAGAAACTGAAATTCGTGCAGATGCCCGAGTGGTCAGAGTGGTCTGGGGTGGATGATGGTGCATTTCCGCGCTTGCACAGGCTTTCCATCAGATGTGCAGATAACATACTGTCTCTTCCTGTAGCGCCCTTTCTGTCCTTGGTTTCTTTTCAAGTGACAGATTGTCCCAATATCACTGCGATTCCAGCATCGCCCAGCCTACGTCAACTACACATTTGTAGATCTCTTGAGCCACAAGGCCTGCCTTTGCTCAGGAAAATCAAGTTTAGCAGCGATAATCTGCAGTACTGTCATGGGCTTTCCGGCTTCACCTCCCTTAAGGAACTGAATATTACGGAATGCCCAAAGCTCTTGCAGCACAGTTGCATTTTCTGGATGATGTGA
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| Protein seq | MAELFASMSVKWALDKLSSLLPASLQVATAPSTTSEGLEDLRMLERTMRRIHATLHDAEEHWIIREESAKVRLTELKELAYDAEDVVDEYEYEANRVSTEVFERSLNTCNGKRKHRRLPTGGTPVCLGRPFLPACKYLFSSSDHMVNDEHYRIKPGVVPVPKYFDTKNITQKIISSLTKESSSLSELADLQEVLGKKLQGKSFLLVLDDVWTERRDTWELLCMPLFASSVCRIMVTTRNEAVAKLVQTMPFYYLDCLSSDDSWLLFQQAAFSVDQQDDTPADLDKIGKNIIVRNEFFRLEADDGCIEIPPNVRYLSIHCISREMSVASHSLRAIIVLNRASGYIENPEALLLGCEKLRALVFYEKEFFLSKALEGFMGSAKLLRHLHCECLLDNRLRKLIIQRYESSKYPSWLGEPSFSNLTTIKFLFCKSERLPTLGELPSLQFLHVREMMFLQHIRQEFCSHGHGFKGFPALKKLKFVQMPEWSEWSGVDDGAFPRLHRLSIRCADNILSLPVAPFLSLVSFQVTDCPNITAIPASPSLRQLHICRSLEPQGLPLLRKIKFSSDNLQYCHGLSGFTSLKELNITECPKLLQHSCIFWMM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29970 | SBH | 0.324290 | 0.623488 | 0.054654 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014500 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014430 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014520 | RBH | 0.0 | 0.0 | 1.507677 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0271700 | RBH | 0.0044955 | 0.051896 | 0.035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014780 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0285400 | RBH | 0 | 0.009521 | 0.0213635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014790 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014730 | SBH | 0.384812 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014180 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014280 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014540 | RBH | 0.0 | 0.0 | 0.0 |
