Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0000360 | OGI:99001810 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg31:247027-251913 | ||||||||
| Gene Symbol | Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5 | ||||||||||
| DNA seq | ATCATAATGTAGAGAGAGTGATAAGTTCTTCTTCCCTTGGCGCCATGGATGCTCCGGCGAGCTTTTCCCTAGGTGCCATGGGCCCTCTCCGCAGGAAGCTCGATTCGCTTCTGGTGGCTCCCGAAATCCGGCTGCCTAAGCCATTGAAGGAGGGAATCGAGCTGCTCAAGGAAGATCTAGAAGAGATAGGCGTCTCCCTGGTGGAGCACTCCGTGGTCGATTCACCAACCCACAAGGCAAGATTCTGGATGGATGAGGTGCGTGACCTCTCCTACCACATCGAGGACTGCATCGACACCATGTTTTCGATGCGCTCCGGCGGCGACGACGGCAAGCCCAGATCCGAGCGCCGCCACAAGGTTGGCCGTGCGAAGATCGACGGTTTCTCCAAGAAGCCCAAGCCGTGCACAAGGATGGCTAGGATCGCGGAGCTCAGGGCTCTGGTGCGGGAGGCGAGCGAGCGGCTCGAAAGGTACCAGCTTGGTGACGTCTGCGGCTCGAGCTCTCCCGTTGTGTTCACCGCGGATGGTCGGGCTCGACCTCTCCACCATGGGGTTTCTGCTAATCTTGTTGGCGTCGATGAGTTCAAGACGAAGCTGAACAGGTGGCTCAGCGACGAGGAGGGGCCGCACCTGAAGGTTGCTGCCATTGTTGGACCTGCAGGGATTGGTAAGACGGCACTTGCTACAGAGTTGTACCGTGACCATAGATGGCAATTCGAGTGCCGAGCTTTCGTCCGGGCGTCGCGAAAGCCTGACATGCAGCGGCTTCTTGGGGGTATTCTCTCTCAAGTTCAGCGTCGCCAACGATCGTCTGATGCCTACGCTGACAGCACGGTGCAGAGCCTCATTGATAATCTCCGGGAGCATCTCCAAGATAGGAGGTATTTCTTTGCCACACAAGTATGCTGCTTCTGCACGCACTTATAATCGTTCTTTTTCACCAAAGCACGCAATAAATCATCAGTAGCATGTTAAAAGGAGATTTGTGTAAGGCAACTTATTTCTCGAGTACTGGTAGATATACAGCACCAGACAACTTAGTTTGTTAATGACAACATTGAGTCATTGACCGTGATTTTTATTTGTGTGAATGAAACAAGCAATTATTAAATGAAAACTCCTCCAATGACACAACTAGTGGATTATCCTGCGCAATTTTGCGCAGAGCTAGATAATTAAAATAGAATTAGATTCATTTGATACGCAGTTCTTAAATTCTATCTTCTGTAGGTACAATTGTATTTTCTACATAATAGATTTAAAAGGTAGAATTGGATTTCATTTACAACTCTTATTTATGTTTCTATTCATACAATTGTATTTTCTATACAACCATATCGATCAATCTACACCGTTATAATATGGGCTCGATATGATCTAACGGTTCAAATCTTTTTCTTGTTCTCCGATTAATGTGGGAATTTCTGGCCTAGCTTCCACAACAAATGTAGTAATGTAGTGGGTTCTTTTCGAGCTATCTTTAAAATAATAATATAGTAGGTAGATAGATTTCAGTATCTAATTCTTTTAACAATTGGAGAGTAAAACACAATAGCCTCTTAATGAATATTGCATGTCTGTAACTGATGATGGAATAGTCATGTGCTTTGGCTTGCAGTTTACTTTTATAGTATTCCTTTTTATGCTTGCTACTTCTTTTAGAATAGCATCATAAAAGTAACTATATATGAAATAATTTTCAGGTACCTTATTATAATTGATGGTTTGTGGGAGACGGCAGTATGGAATATTGCTAACAGTGCTTTTCCAGATGTTAACAGTTTCAGTAGAATATTAATAACTGCGGATATCGAACAGGTAGCTCTGGAATGCTGCGGTTACAAGTATGATTATATTATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACGTGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGGTGAGTTCCTCAAGCTGAGCCGAAAATTGATCTTTATCATTTTTTGAAGGACAAACAAGACTAGACCCTAGTAGATAGGAAATGACGCAAATAACTGTAAGGTTACAGTACAAATTAAAGTTGGATTTGCAATCGTACTTCCACTTTTAAGGTTTGTTGTAAGTACCTTTCTTCATTGAATCGGTATCTCTTAAATAACATCTCTTTAAGATGGGAGAAAACCTTCAGTACATGTACACTCATAAAGTCTTAATTCATTTAGAAAATTGAACATGGACATGAATAAAGCATGCTTGTCCCTTTGGTAAACATATGTTGATGAGTTCTTTAGCAATCTGATGTCCTATTTTGAATCTTAATAATGACTAATATATTGTTTTGCTTGTTGATGCAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGCTGCGTCAGTGAACGGTAAATCTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTAGTTTATGCCTTTATGCTTGCAGGGGTGGACAGCGTGGAGATAACGGGGGAGGACAAAGACCGGCTGGTGGTGGTCGGCCGTGGCATTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTAGAGTATCCACCTTCAGCACCAATAATGCAAGATATTAACCCTTGCAAAACCATGTGAATTCTATGTGATATTACGTGTTTCTCTGTGTGATGAATAATTAGCTACATTAGCTGAAGTTTCTGAGTGTCAGTGGTTTACCCTTAAGTTGACTGGCACCATTAGTGGGATGGTAGTCATCGGTGCAGGATTTCATCCATCAGTGTTCCAGTTCCAATGTCTATATTTAAAATATAGCTATGTGCATCCTTAACTAT
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| CDS seq | ATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACGTGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGCTGCGTCAGTGAACGGGGTGGACAGCGTGGAGATAACGGGGGAGGACAAAGACCGGCTGGTGGTGGTCGGCCGTGGCATTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTAGAGTATCCACCTTCAGCACCAATAATGCAAGATATTAACCCTTGCAAAACCATGTGA
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| Protein seq | MRMEPLGSLDSKKVFFNKVFGSEDQCPPELKEVSNTILEKCGGLPLAIISIAGLLGSQPENPVLWDYVTKYLCSSLGTNPTLKDVVKETLNLSYNSLPHPFKTCLLYLGMYPDGHIMLKADLMKQWSAEGFVSANEAKDTEEIVDKYFDELVNRGILEPVEINKNGKVLSCTLHHAVHDLVMPKFNDDKFTMSVDYSQTITGPSTMVRRLSLHFSSTRYATKPAGIILSRVRSLAFFGLLNCMPCIGEFKLLRVLILEFWGSHGEQRSLNLIPVCRLFQLRYLKTSGDVVVQLPAQISGLQYLETLEIDARVSAVPFDLVHLPNLLHLQLQDETKLPDGIGCMRSLRTLQYFDLGNNSVDNLRGLGELTNLQDLHLSYSAPSSNEGLMINLNAITSSLSRLSNLKSLILSPGAISMVIFFDISSIISVVPVFLQRLELLPPICIFCRLPKSIGQLHKLCILKVSVRELLTTDIDNLTGLPSLTVLSLYAQTAPEGRFIFKDGTLPVLKYFKFGCGELCLAFMAGAMPNLQRLKLVFNIRKSEKYRHTLFGIEHLVSLQDIATRIGVDTSTGESDRRAAESAFKETVNKHPRCLRSSLQWVVSTEEESHPLEKQHHKREKGSSAGHGVLEKESVEDSEKNTDRVQTLLSPQLSNMESVVESALTGQRTKIVVKVHMPCGKSRAKAMALAASVNGVDSVEITGEDKDRLVVVGRGIDPVRLVALLREKCGLAELLMVELVEKEKTQLAGGKKGAYKKHPTYNLSPFDYVEYPPSAPIMQDINPCKTM |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0000360 | OsLima_Ung0000360.01 | ChrUN-Ctg31 | 247027 | 251800 | + | NAM | ||
| CDS seq | ATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACGTGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGCTGCGTCAGTGAACGGGGTGGACAGCGTGGAGATAACGGGGGAGGACAAAGACCGGCTGGTGGTGGTCGGCCGTGGCATTGACCCTGTTCGCCTGGTGGCTCTCCTGCGCGAGAAATGTGGCCTCGCCGAGCTCTTGATGGTGGAGTTAGTTGAGAAAGAGAAGACACAGCTGGCTGGAGGAAAGAAAGGTGCATACAAGAAGCACCCTACCTACAATTTATCGCCGTTTGACTATGTAGAGTATCCACCTTCAGCACCAATAATGCAAGATATTAACCCTTGCAAAACCATGTGA
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| Protein seq | MRMEPLGSLDSKKVFFNKVFGSEDQCPPELKEVSNTILEKCGGLPLAIISIAGLLGSQPENPVLWDYVTKYLCSSLGTNPTLKDVVKETLNLSYNSLPHPFKTCLLYLGMYPDGHIMLKADLMKQWSAEGFVSANEAKDTEEIVDKYFDELVNRGILEPVEINKNGKVLSCTLHHAVHDLVMPKFNDDKFTMSVDYSQTITGPSTMVRRLSLHFSSTRYATKPAGIILSRVRSLAFFGLLNCMPCIGEFKLLRVLILEFWGSHGEQRSLNLIPVCRLFQLRYLKTSGDVVVQLPAQISGLQYLETLEIDARVSAVPFDLVHLPNLLHLQLQDETKLPDGIGCMRSLRTLQYFDLGNNSVDNLRGLGELTNLQDLHLSYSAPSSNEGLMINLNAITSSLSRLSNLKSLILSPGAISMVIFFDISSIISVVPVFLQRLELLPPICIFCRLPKSIGQLHKLCILKVSVRELLTTDIDNLTGLPSLTVLSLYAQTAPEGRFIFKDGTLPVLKYFKFGCGELCLAFMAGAMPNLQRLKLVFNIRKSEKYRHTLFGIEHLVSLQDIATRIGVDTSTGESDRRAAESAFKETVNKHPRCLRSSLQWVVSTEEESHPLEKQHHKREKGSSAGHGVLEKESVEDSEKNTDRVQTLLSPQLSNMESVVESALTGQRTKIVVKVHMPCGKSRAKAMALAASVNGVDSVEITGEDKDRLVVVGRGIDPVRLVALLREKCGLAELLMVELVEKEKTQLAGGKKGAYKKHPTYNLSPFDYVEYPPSAPIMQDINPCKTM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0000360 | OsLima_Ung0000360.02 | ChrUN-Ctg31 | 247027 | 251800 | + | NAM | ||
| CDS seq | ATGAGGATGGAACCTCTTGGCAGCCTTGATTCCAAAAAAGTTTTCTTCAATAAAGTTTTTGGCTCCGAAGATCAATGTCCTCCTGAGTTGAAGGAGGTGTCAAACACAATCCTAGAAAAATGTGGTGGTTTGCCACTTGCAATCATCAGCATAGCAGGTCTTCTAGGAAGCCAACCGGAAAATCCAGTGCTATGGGACTATGTAACGAAATATCTATGTTCCAGTTTGGGTACAAATCCTACTTTGAAAGACGTGGTGAAAGAAACGCTAAACCTTAGCTACAACAGTCTTCCTCATCCGTTCAAAACATGTCTGCTATATCTTGGTATGTATCCTGATGGGCACATAATGTTGAAGGCTGATTTGATGAAGCAATGGTCAGCTGAAGGTTTTGTCTCTGCCAATGAAGCAAAAGACACAGAAGAAATTGTAGATAAATACTTTGATGAGCTTGTCAACAGGGGAATTCTAGAACCTGTTGAGATTAACAAGAATGGCAAGGTGTTGTCCTGTACCCTGCACCACGCTGTACATGACCTTGTCATGCCCAAATTCAACGATGACAAATTTACTATGTCAGTAGATTACTCTCAGACTATTACAGGACCTTCTACCATGGTTCGTCGTTTGTCCCTTCATTTCAGCAGTACCAGATACGCGACAAAACCTGCAGGAATAATATTGTCACGAGTTCGATCACTTGCCTTTTTTGGCCTCCTCAATTGTATGCCTTGTATTGGGGAATTTAAGTTACTGCGAGTTCTAATCCTAGAATTTTGGGGCAGTCATGGTGAGCAAAGGAGTTTAAACCTAATACCAGTATGTAGATTATTTCAGCTGAGATATTTGAAAACTTCAGGTGATGTAGTTGTTCAGTTACCAGCTCAGATAAGTGGGCTACAGTACTTGGAAACACTGGAAATAGACGCAAGAGTGTCAGCTGTTCCATTTGATCTTGTTCATCTCCCGAACCTACTGCATCTCCAACTTCAAGATGAGACAAAATTACCTGATGGGATTGGCTGCATGAGATCTTTGCGTACACTACAGTACTTTGACCTTGGTAACAACTCTGTAGACAACTTACGGGGTCTTGGAGAGCTGACAAACCTGCAGGATCTTCATCTCAGCTATTCTGCACCGTCATCTAATGAGGGTTTGATGATAAATCTGAATGCTATAACCTCTTCACTTAGCAGACTTAGTAACCTCAAATCTCTGATTCTATCACCAGGTGCTATAAGCATGGTTATTTTCTTTGATATATCAAGCATCATATCTGTGGTTCCTGTATTTCTTCAGAGACTTGAGCTGTTGCCACCCATCTGCATCTTTTGCAGACTTCCCAAGTCGATTGGACAACTTCACAAACTCTGCATTTTGAAAGTTTCCGTTAGAGAACTTCTGACAACTGATATTGATAACCTCACAGGATTACCTTCCCTCACAGTTCTCTCATTATATGCTCAGACAGCTCCAGAGGGAAGGTTTATCTTCAAAGACGGGACTCTCCCAGTTCTCAAGTATTTCAAATTTGGATGTGGTGAACTCTGCCTTGCTTTTATGGCTGGAGCAATGCCCAATCTCCAGAGGCTCAAATTAGTTTTCAACATCCGTAAAAGTGAGAAGTACCGCCATACGCTTTTTGGGATTGAGCACCTTGTAAGCCTCCAGGATATTGCCACACGAATTGGGGTTGACACCAGCACCGGCGAATCTGATAGAAGGGCTGCAGAGTCAGCATTCAAGGAAACTGTCAACAAGCATCCAAGGTGTCTTAGGTCCAGCTTGCAGTGGGTGGTTTCCACTGAGGAAGAAAGTCATCCTTTGGAGAAACAACATCATAAGAGAGAAAAAGGCTCATCAGCTGGACATGGGGTTTTAGAGAAAGAATCAGTGGAAGATAGCGAGAAGAACACTGATAGAGTGCAAACATTATTGTCACCCCAACTGTCAAACATGGAGAGTGTGGTGGAAAGTGCATTAACGGGGCAACGAACTAAGATAGTTGTTAAGGTGCACATGCCATGCGGAAAATCCCGAGCAAAAGCCATGGCGCTGGCTGCGTCAGTGAACGGTAAATCTGCGCAAATATATTCTTCCGGTTGTGCAGTCCTGATCAGTACTCCTACTAGTTTATGCCTTTATGCTTGCAGGGGTGGACAGCGTGGAGATAACGGGGGAGGACAAAGACCGGCTGGTGGTGGTCGGCCGTGGCATTGA
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| Protein seq | MRMEPLGSLDSKKVFFNKVFGSEDQCPPELKEVSNTILEKCGGLPLAIISIAGLLGSQPENPVLWDYVTKYLCSSLGTNPTLKDVVKETLNLSYNSLPHPFKTCLLYLGMYPDGHIMLKADLMKQWSAEGFVSANEAKDTEEIVDKYFDELVNRGILEPVEINKNGKVLSCTLHHAVHDLVMPKFNDDKFTMSVDYSQTITGPSTMVRRLSLHFSSTRYATKPAGIILSRVRSLAFFGLLNCMPCIGEFKLLRVLILEFWGSHGEQRSLNLIPVCRLFQLRYLKTSGDVVVQLPAQISGLQYLETLEIDARVSAVPFDLVHLPNLLHLQLQDETKLPDGIGCMRSLRTLQYFDLGNNSVDNLRGLGELTNLQDLHLSYSAPSSNEGLMINLNAITSSLSRLSNLKSLILSPGAISMVIFFDISSIISVVPVFLQRLELLPPICIFCRLPKSIGQLHKLCILKVSVRELLTTDIDNLTGLPSLTVLSLYAQTAPEGRFIFKDGTLPVLKYFKFGCGELCLAFMAGAMPNLQRLKLVFNIRKSEKYRHTLFGIEHLVSLQDIATRIGVDTSTGESDRRAAESAFKETVNKHPRCLRSSLQWVVSTEEESHPLEKQHHKREKGSSAGHGVLEKESVEDSEKNTDRVQTLLSPQLSNMESVVESALTGQRTKIVVKVHMPCGKSRAKAMALAASVNGKSAQIYSSGCAVLISTPTSLCLYACRGGQRGDNGGGQRPAGGGRPWH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0000360 | OsLima_Ung0000360.03 | ChrUN-Ctg31 | 251710 | 251913 | + | IsoSeq | ||
| CDS seq | ATGGTAGTCATCGGTGCAGGATTTCATCCATCAGTGTTCCAGTTCCAATGTCTATATTTAAAATATAGCTATGTGCAT |
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| Protein seq | MVVIGAGFHPSVFQFQCLYLKYSYVH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | ChrUN-Ctg31 | 251284 | 251800 | + | OsLima_Ung0000360.02 | OsLima_Ung0000360.02,OsLima_Ung0000360.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.973506 | 0.261310 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0225300 | SBH | 2.019053 | 1.250956 | 4.432347 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11810 | SBH | 0.704885 | 0.507252 | 0.672848 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0225300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007970 | SBH | 0.462562 | 5.735374 | 2.408226 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007980 | SBH | 0.297682 | 4.919609 | 1.817719 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007850 | SBH | 0.666380 | 3.643716 | 4.156754 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007750 | SBH | 0.266105 | 0.292467 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007770 | SBH | 22.293795 | 17.082457 | 21.002594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0104800 | SBH | 9.8728925 | 17.3811525 | 9.2154185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007760 | SBH | 1.028826 | 0.606468 | 2.400014 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111000 | SBH | 11.163192 | 12.880398 | 7.240871 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007930 | RBH | 0.395772 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007860 | SBH | 0.322153 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007830 | SBH | 15.697803 | 27.759771 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065040 | SBH | 0.564460 | 0.0 | 1.446793 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007890 | SBH | 1.034561 | 7.104585 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007940 | SBH | 0.421739 | 2.155976 | 1.788703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007750 | SBH | 0.327408 | 12.925796 | 3.389852 |
