Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0019470 | OGI:12065900 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:24311919-24319507 | ||||||||
| Gene Symbol | OsCROC-1, CROC-1, CROC1, OsCROC1, OsUEV1B, UEV1B | ||||||||||
| DNA seq | agcagaaataagtagaatcaatttctagctgaagcctgaagatcatatgaatttattgttgctggctgcaatatagcctgtgccaagttaggactagatacatcggttcagaactcttgaaaactagatatatctacagtacaccacatgcttgacaggttttatgcggatgaaaaattttcatggtatctctacacaaggctcttcatcttacgcttcagccacatggttcgaatatctacagtcagtgaaagAaaaatctcccgattgcttggatccaagaagacgtccggtgcgagcgacttctcgatcggcgagaggtctgccatggcgttcatcacctcgatgcaccgcggaatgctgtacctatcaacatggttttccagCtgtttattgtctctctgaaacttggggtcagcatgtccttccataacatcggatgttccatcctcactgggcctcctcaagtagtgccatgcctctcctcgcacttcctcagtaggcctcctagtgagctgccatgattccggccgcacttgggtaagcggttttgggtatagatgcccattcatagtctggacttcgacgccaactaaagtctcctgttggaatgaagactctctggatactggagatggggagacaggcgagagtggtcggttcatataataatcatcttcttcatcgtcacttgagtcagcttctgttccattcctttcatttggtgttggtccagcaagaatatttttaccatccaaaataacaccaactgcagaatatgagcaatatttaaattttagcaacagattgcaattcataCccaaaaaaaaaaatcaaagacttcctccgtcagggcaagccataaatgtcatcattggagaataattgcaacaggacatatttgaacttaatgtgcagcataaaacatgctattctggaggccccggtttaatgAagacataattccaaagtgtactgacctatacaataacttcaatttgtatttgttgaggtatattgttccttaagaacaatgtacataaaaaccaaagcataatgctgcttctatcagattattctttagtatagccacaatttactactacctccatcacttaatgtatgacgtcggttagttcaaaattgaaaaaaaaaatcagagggagtactatttactttggtgtagtaaaatctaaattactgcattgattgctgtgcagtttgtcgttattaaatattccttgtattttgtatagaatttcacaggactGgGTGGTGACAAAATACAACAAGCATATTTATCGGTTCATACTTTCATGTGCATTTAACAATTGCAGATACATATTGACAAGATCATAAGTCCAGAACTCCCTATGTCTGTGTGTGCCAGCCTGCCAGGTTCCTCCACAGCATTAGGTGTATATGTTAGATATGATAAGGTTCTATAATGTATTTTGTGATTGTGGGCCAACCAAACAGTTTATCTTGATGATGGAACAGAAGGCACCTTGTTCTACCATGATGATCAAGTTAGTTTTCCCTACAATGAGATGGCCACGGAATGAAAAGCTCCAAGTTCTACCATGATGGTTAAACTGAGACAAACAGAATTTGCCTGACAGGAAAAGGAACCAGGTCGTGCATGTAATCAAAAACAGCACAATTTTCTACCTTAACTACTGCAACCAACAGAACTCCCTCTTTTGTTACTCTCTAATGAGCCCTACTGGGTTTGGACCATAGCAACAGGTAGACAGTCCTATCTGTGCAGATTTTGTAACTTTAGCAATAAAAAATAAAATACAAACTAGTGTTATCTCTTTGAGCCATGTATTGAAAAAAAAAACATTTCTGGGAGCATTAGAAGCCTAAATCTCCTGATTAGAAGGATCCTGGGATAGCTGCTACTTGTAGCCGCAAGCAAACGGTTGTAAAAATCTGCTATTTGAAACAAGATCAACCAAAATCTCTAACTCCTATAGCTGGTGCAAATCACCTTCCCAGTTATGAAACTTATGTGGTATATATTccaattaattctacttcaaacaattgtatctactaaatcggattggcaacacattgtattaccttttctcccatatgggttcttgcaatcatcacatttacagttgatggagcatcctgctcctcccttcaaacacagaagaaaaacatatccatggtcatgagtggacaaaagatgagaaactaacaggatagagctagatatgaaacctggtagcagtcacagtatttcttaaggcagcctgactttttgcaagtgcattttcttctaccaaagtccataggggatcttataagttgttcctagagagatcataccaggaacagtgaaaccaggaacacaaaataatccaaaataataagattctgtttaagaaaaatgtataccacgaatcttgaccagtctctaatgtttgaacagctttcaaaggcaaggctggtgtactccgtggaacaccatgaatagatttgttgtaacatggatcacatccacatgattcagaacaatgtgatccagatgcaaaacacacacaataactgccacagcataaatcaagtgtcagttacaaacagaaagaaatgattacttagcagtaataaacataaagcatggtgttgcacacaagctcttggctggctggagtgctggacagggtttgtgtctaggcctgcaggaggtgggatgggggtttatgcaggtgtgctcaaaccatatcaggatttccatcctctttacatgcatctccatgcataaaaatcccccccccccctccccaaaactcagagtgaggtgacaaattacattaatggcactaatgtgcagattatcaggaaaaacaaaattagccagttcctctgagttgtggtttaaggcccaaactttacagcaaaatataataacagaaacaaaaggagagtaaattttatacccaaaaaaaggaccacccttcataaactataaagtacctaacaactcattgacatgttgttagtgctacagaattttTACTCTCAAGCAGGACTCAAACTAAAAGTAATCGGTCCTTCGCCAACATACGTTTCAAAAGCGTGATCATCGAAGCTAGAATTACATGAAAACTATCACAGGATTCTTTAACGATGGCAAACTATATCACCACCCGGTGAAAAAATGATACTCCAAGAGCATCCTAGAGATAGATGATACGAACAAACAAAGAGGAGCTGGACATGATAAACCCTCAATTTCTCCACCCTCTATCGTGTTATGGTAAGATCATGAGCCAATTCTACCATTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGGAAGAGGAAAAATCTTACAGCTTAAGGCACTTGGATTTCTTGCAGCTGCACGACTTGCACCCTTCCCCTTCATCCGTCTTCCTCCTAAACATATAAAAAAATTAAACAGCAAAAACGAGTTAGCAGCACGCAACGTACCAAAAACAGGAAATCGAAGACCAAAAAACGAACGCCACCGACTTCTTCTTCTTCTCCGAGTTGCCGTTCGCCTCCACCACCGCCGCGATCGCCGCCGGCGGCACGGCGAAGGCGGCTTCCGCGGAGGCGTTCTCGGCGGGGGCGAGGAGGGCGGGGGCGGGTGCTGGTGGTGGTGGTGGTGGTGGCGGGGGAGGGGGAGGGGCGATGACGACGACGCGGTCGCGGAGGAGGGGGTCGTCGGGGTCCGATCCGGACGCCTCGAGCTGCGGCGGGGGTGGGGGCGGGGGCTTCGCGGGATCCTCCGCGGCCGACATCGGATCGGGCGACGCCTCCTCCCGCCCGATCGGCGGTGGCGGTGGCGGCGGCGAGGGGTTCGCCGTGGCGGCGAGGGGGGAGAGAGAGAGGCGGAGGCGAGGGGGAGGAGGAGGGCACGAGGCGATGCGGGATTGGAGGAGAGGCGATGCGGGGGGTGGATCGGACGGCGGGGAGCGGCTTTGAGATTCGGGTCTGGCTACGATGGATGATGGGGAATTTATTTATTTTTTTTCGCTCTCTCTCCATCTCCCAAATCGTATAAATTCCcgtcctttaacttcaattcgcgaattttaaattgggggttggggattattgttacgaagatgatatttatagccctatcgtttggcttatttgacgaggaataatcccaacgatatgtttgcaaacggaaaaaatataatttgtgaataaaatttttatatacatatttttaacgatctaaaagtagaggctgaaaaataaactacaatgaaaaaaactctaaagtcaactctaaattgaaaatttaaattttactgataagTAtaaacatacacgaaaagataaagctggtatatattctccgtaaaaaaaaacaacttctaatctatgtctgtcaaaagttggttgtttcttccacgaagtatgtagtgaaattagttaagagttcgttttattcttattgcaatgggattttgttattatgttaaattatggggtttagattgcgttacttattttggatgatatagggcttgtttggttcaataccctaccaaaatgttggtagtgccaaaacctaggcaagttttggtactaccaattttttggtagggtagagttgtatttggtttgaggccaatttagaaccaagcattgagtagaatatagaaaatatcaaattgggcattggcaatgccaatgatttggcttcaaaccaaaatcaccagatacactgttcaaactaccaaagtattggtagggcacgTttttggcactaatccaaaacagcccataattaaatgccgtctttgaattgaactctcgcccatgtatttacgaaatttaaattagaaggggtatgaatgaagatgatatgtttaggtggaaatagattaggagtttgctttattcgagttgcgattgcgacgggatttgtttttttttaaattacggttttagattgcgttcacgaatagtataagtactattttgatgatatatgctttgtaaatttgtttaagagttcgttttattcgtattgccatgcgatttgttatttgaaaTtatcttttcggatcgcgttctttaatatcatatctgttgtcctgttgacaatcacaactctaatcaatcttattatggtacagcatagcatgagataatgaattactctatttccagttattagagcgattcgcaattgaaaactttgtgatttaaaatttagtacaattttatcaccacagatgtgagatcaggttaatgcaacatggtaatctgaagacaaaacaaacaacaaatttagacttgcaatgccagaaaaagaaccagcatagtaccacttcagaaacatagccaaatctgcagagcatcactagattcattacaaagattttaccccaattcgttagttttgtctcttgaggtaatgccgtactggcaaactgttaaccaaacaagcgagacacgacacaaacacaggacgtacacggaccacgtacaaggtagtaccagcgaagttcagctacaatcatttgcaccaaatgttcagacggctcaaatctcatgcgatatatagaaagagaattacaatggttcatccatggcatgcggagatgagtggcgggcgcctgcttctagaagaatgtcccctctggaggctgcactagtttccggttgtgtgatgctgccatctctttcttaagttgggtcaagatagcctccattgtgtactcgcggcgccaatttgacaacaggctgaacttcctttggtcaacctacattagctccaaaagataagttttaattaatcaaataattgaacacaagagttagaaataattctgaaccaaatttctcgtgtcataccaatccattctctgggTttacacaggtcatgttgattcttgagtgaaattttacagttggtggcctgtctgggtagtccttgtcgcagaaaagcttcagttggtatatccggccctcatggacagtctatcaaaaattcaaatgttcgaaaccaaatatatatcaacaagaaagcgtcgagctcagaacgcaacagttacatatgaagattatgagtacaagagtaagcaatggaaacaaacaacttacgttatggggaccaataattgtgccTctccaagagcgcatgtagatatcgtctgcatcatccattccatagcttactgatccatcaccgatgcccttctcccctctctcaagctcttctagcagtctgaagttcctaggcactgagataacatttatactagttaataacacagcttgcttcacagagcattaaaaacacaaccaggatacgattctcctcctggttacatcaagaaggtaccaagggcaagtattttgccaaatatccattcaaaaacttatcttggcaaatacaagcatcatgaacttgttttaaaatgtaagttccaaacccactaatttggattcaaaccatgaggatttatgtaacgagatgaaatGgggtccaagtgcccaactgattgcagtaagtgctaagtaatagacaatcatttatgaacggggaaaagacaaccgctaacaaactattttacgctctgaccacataagcgcaaaaactgaatgaaggcttagaagggaaaaatgtccagcccaagcattcgactctagcaatagtcctggactcctggtaaactacaagtgatagcttccaccaccagtttggggctttaggcaaagctagtctgtcaaacgaaaacatcgtgtatggagaaggcgagaagcccaatactgcattctaccaatccacaagtaataactgacaactaatgctacctttctgaaagatccaacatttcctgctccatgataagattacaagtacatttagctgctactactatcattttaaccgtcattcattcaaatagcacacctcgaatcctcgatgcaataatcgaacagggacaaatagcatatgcctctagtgcaccatatcatgaggaaaaccacgAaaaacgtctatactttCcccttccctgatatatcaagggagatttcgcaatcgtcctgaatattaattaatcggtacgcagtgtgtgcgaaccagaacacatagcagccaaatcgatctgctccgatgatggatccacggcaggtgacagcagcgagcgaattgggaccccccccccccaaaaaaaaaaaaaaaatcgatccaatcaatcaatcaatccatccatccatagaggaaacggaggttccggggtaggctccgcgctcgcgctagagggagaggaggagatcggggggcgcgggtcaaaggaagcggatccaggagaagctagggcttaccgacgactgccgatggatctccactcgacgccatcccagctgagcgcaggcgccggcttcgcgacgacaaccagaggccgcagcggcggattggcgggacagcgggcgatctccggcggcggcggcggaggaggggttcgcttccgttcccctttggtggtggtgtgtgagtgcgcggagacgaagccaaccaaagaagaggggggaagacgagccgatccccagagccgcgac
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| CDS seq | atggcgtcgagtggagatccatcggcagtcgtcgtgcctaggaacttcagactgctagaagagcttgagagaggggagaagggcatcggtgatggatcagtaagctatggaatggatgatgcagacgatatctacatgcgctcttggagAggcacaattattggtccccataacactgtccatgagggccggatataccaactgaagcttttctgcgacaaggactacccagacaggccaccaactgtaaaatttcactcaagaatcaacatgacctgtgtaaAcccagagaatggattggaacaacttataagatcccctatggactttggtagaagaaaatgcacttgcaaaaagtcaggctgccttaagaaatactgtgactgctaccagggaggagcaggatgctccatcaactgtaaatgtgatgattgcaagaacccatatgggagaaaagttggtgttattttggatggtaaaaatattcttgctggaccaacaccaaatgaaaggaatggaacagaagctgactcaagtgacgatgaagaagatgattattatatgaaccgaccactctcgcctgtctccccatctccagtatccagagagtcttcattccaacaggagactttagttggcgtcgaagtccagactatgaatgggcatctatacccaaaaccgcttacccaagtgcggccggaatcatggcagctcactaggaggcctactgaggaagtgcgaggagaggcatggcactacttgaggaggcccagtgaggatggaacatccgatgttatggaaggacatgctgaccccaagtttcagagagacaataaacaGctggaaaaccatgttgataggtacagcattccgcggtgcatcgaggtgatgaacgccatggcagacctctcgccgatcgagaagtcgctcgcaccggacgtcttcttggatccaagcaatcgggagattttTctttcactgactgtagatattcgaaccatgtggctgaagcgtaagatgaagagccttgtgtag
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| Protein seq | MASSGDPSAVVVPRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWRGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLEQLIRSPMDFGRRKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNPYGRKVGVILDGKNILAGPTPNERNGTEADSSDDEEDDYYMNRPLSPVSPSPVSRESSFQQETLVGVEVQTMNGHLYPKPLTQVRPESWQLTRRPTEEVRGEAWHYLRRPSEDGTSDVMEGHADPKFQRDNKQLENHVDRYSIPRCIEVMNAMADLSPIEKSLAPDVFLDPSNREIFLSLTVDIRTMWLKRKMKSLV |
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| Function | Ubiquitin-conjugating enzyme E2 variant 1C [UniProtKB/Swiss-Prot:Q9SJ44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0019470 | OsLima_12g0019470.01 | Chr12 | 24311919 | 24319507 | - | NAM | ||
| CDS seq | atggcgtcgagtggagatccatcggcagtcgtcgtgcctaggaacttcagactgctagaagagcttgagagaggggagaagggcatcggtgatggatcagtaagctatggaatggatgatgcagacgatatctacatgcgctcttggagAggcacaattattggtccccataacactgtccatgagggccggatataccaactgaagcttttctgcgacaaggactacccagacaggccaccaactgtaaaatttcactcaagaatcaacatgacctgtgtaaAcccagagaatggattggaacaacttataagatcccctatggactttggtagaagaaaatgcacttgcaaaaagtcaggctgccttaagaaatactgtgactgctaccagggaggagcaggatgctccatcaactgtaaatgtgatgattgcaagaacccatatgggagaaaagttggtgttattttggatggtaaaaatattcttgctggaccaacaccaaatgaaaggaatggaacagaagctgactcaagtgacgatgaagaagatgattattatatgaaccgaccactctcgcctgtctccccatctccagtatccagagagtcttcattccaacaggagactttagttggcgtcgaagtccagactatgaatgggcatctatacccaaaaccgcttacccaagtgcggccggaatcatggcagctcactaggaggcctactgaggaagtgcgaggagaggcatggcactacttgaggaggcccagtgaggatggaacatccgatgttatggaaggacatgctgaccccaagtttcagagagacaataaacaGctggaaaaccatgttgataggtacagcattccgcggtgcatcgaggtgatgaacgccatggcagacctctcgccgatcgagaagtcgctcgcaccggacgtcttcttggatccaagcaatcgggagattttTctttcactgactgtagatattcgaaccatgtggctgaagcgtaagatgaagagccttgtgtag
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| Protein seq | MASSGDPSAVVVPRNFRLLEELERGEKGIGDGSVSYGMDDADDIYMRSWRGTIIGPHNTVHEGRIYQLKLFCDKDYPDRPPTVKFHSRINMTCVNPENGLEQLIRSPMDFGRRKCTCKKSGCLKKYCDCYQGGAGCSINCKCDDCKNPYGRKVGVILDGKNILAGPTPNERNGTEADSSDDEEDDYYMNRPLSPVSPSPVSRESSFQQETLVGVEVQTMNGHLYPKPLTQVRPESWQLTRRPTEEVRGEAWHYLRRPSEDGTSDVMEGHADPKFQRDNKQLENHVDRYSIPRCIEVMNAMADLSPIEKSLAPDVFLDPSNREIFLSLTVDIRTMWLKRKMKSLV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0019470 | OsLima_12g0019470.02 | Chr12 | 24317230 | 24319445 | - | IsoSeq | ||
| CDS seq | ctcacacaccaccaccaaaggggaacggaagcgaacccctcctccgccgccgccgccggagatcgcccgctgtcccgccaatccgccgctgcggcctctggttgtcgtcgcgaagccggcgcctgcgctcagctgggatggcgtcgagtggagatccatcggcagtcgtcgtgcctaggaacttcagac |
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| Protein seq | LTHHHQRGTEANPSSAAAAGDRPLSRQSAAAASGCRREAGACAQLGWRRVEIHRQSSCLGTSD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.420424 | 1.711678 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0605300 | RBH | 0.981341 | 2.677542 | 5.696773 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41210 | RBH | 0.664877 | 1.794774 | 1.464939 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0605300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020010 | RBH | 1.283585 | 11.184737 | 5.196801 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020110 | RBH | 0.720700 | 2.130440 | 1.276663 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020440 | RBH | 1.956243 | 7.071786 | 9.586905 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019750 | RBH | 0.092796 | 0.277661 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019340 | RBH | 32.528797 | 151.486603 | 93.450027 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0341600 | RBH | 4.787423 | 13.0458575 | 13.58215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019210 | RBH | 0.279548 | 0.436629 | 1.593825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0372300 | RBH | 1.9602825 | 2.0553815 | 5.849438 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0031830 | SBH | 0.453053 | 0.522616 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019680 | RBH | 1.018485 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019610 | RBH | 12.272624 | 69.024506 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019660 | RBH | 0.243978 | 0.0 | 1.175460 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019820 | RBH | 0.223607 | 1.832390 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019470 | RBH | 0.902805 | 1.675420 | 2.191898 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019180 | SBH | 4.201724 | 63.112083 | 21.555706 |
