Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0031830 | OGI:03080790 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:31563481-31568391 | ||||||||
| Gene Symbol | OsUEV1A, UEV1A | ||||||||||
| DNA seq | cagtacagtagttggctggttgctaccactacacgagctcgggaggaaggaaggaaggaaggaaggaatcgcaaggcgaagagtcggagctggcggaggaggaggtgctcgcgatggggtccgagggatccgccggggtcgtcgtcggtgagtagccagggaacccttgccgaattttggttttgtggtggtggatttgggtggggtGgggggatcttcgcggccggtcaagaacgcgagagttggttgagttcttgatgggatttttaggggctgattctcgtgtggtagggcgtaatttctctggacgtgcgcgtaggcaagattcaagaaactctgagagcaaatgtagattcgtgaggaattaggatttgttagattcgtgaggagttaggattgcttcgggattagattgttctgtaaaggggaatgctgagggggtagtctcagctctcggttcccaattcgccgaactcttagcactgtgaattcttgttcaattgtttgttcttttgtggctaagctaagaattggagcaattttatatggatggaaacgatggatttaggggtactagctggatttgttggttgctcacgtttatcttcaatcgcgaattattgcatatcaataagtttgtcttatcattagttcctgagtttgatcctaatatcagtatttttggcatttctaccatttcttggtttgggtattttttgcataacaagatgaacaatactgctacttcatagggggGgagagagAgagagagagagagagagagagagagagagagagaggagagagagagagaggggatccctatatttggtcattgcaaaataaaaaatccgcaattaagtcactcaagtctgatcatgtgtttgaatttggtttactaatactttacagccacagctgtggcttgtcagctaccccacttgttcatagacatgttttttttttaacccaaattgtagattggcacaTttttttttccaatatgcaactaaggccgagtttagttctaaattttttcttcaaacttccaactttttcatcacatcaaaactttcctacacacacaaacttccaactttccgtcacatcattccaatttcaaccaaacttccaattttggcgtgaactaaacacaccctaatgataatttttccttgaatacgcaagatgcgctcattgcattagtagaagaagtaaggcatccaaacacgccaaagaacagcaaaaagtacaggaacttgcaccaccacaaaacaacccactgcaagggcggtgacaaaaccaaaaagtactaaaatagaagtccctagccggggtccatgagggccccttagcccccgccaaactccataggcgggcttactcacttgctaacatcaagacctaggcgggcttactcacttgctaacatcaagaccctatactaatgatattaaaatacaaccagggtgatgcattttacttttgtgatccactgtgTtgtgactagcatgccacaaaATaaccAAaaataaaggaagtcattcatactcttaagaaaagagacttctaagcgaatacaaagtgaatattacttccaactaataagaattgttccagcgtattctttccactaaaagatgattcgtcctcctaagacatccaactcaatttattggcattcttttctcttcttacaaatggttccaattctgaaaaaaaaaaCgtaaatcttttgctttatccgaggCcttgtaattattttatcttaccatttatcgtgttcttttctaaattttgcttgaaagtactccctctagtcattaatatatgacgttttttaacactaaaatatgtattaaaaacgtcatatattaatagccggagggagtactttacagaaatggaataaggttagagtggaacataataatctcaataaatggatattgaatctaccctatccatgcactgtagttttttggatgactataaactgatacattcctttatcctaaaatgatactggaactactttaggatttaatgaggaccaaaaagactgtcctagtagcatatgcattttgttaagggagactcaacttttatgattcttattaggtctatgcaccaggttaatatattgttatatctagagcggaaaccagagtttactttcggagtcaataatttgctctttcgttaattcataatggcaggaaagacccttcatttattcacacaagatggccttcttatttcccaatagtgcagctttgcttcccaattggtacttctcgagttaaaaaagaaatattaagcatggaattctcaacaatgcaatgactggctaaggcccactgtgcttatctttttaattgttgcagaaatgtaaacttagaaccattgcattttctttacaaatcaaattaaggttagacaaaacatggtatccaactgttatgtatttcacaatcgttctatcttttctgaatgcaataatattgccgtttgcatcttaaattaaaagaaaaacatttagccaaacacccgaacatctaaaagcagttgaaccaaatgagaatatgataatccacctcaatcgaacaggagtctaagtcagctttgcatgccctaaacatgcatttttatcgtagccatcctatagatggaccatggcaaaacagaactacagaacacattcccttgttcttgaccccatacataattgatagtaactgaaatcaattcactatatacagatcctgtgagttctgaccttagaaactttctttcttgtcactccatgcataactctctatctcatcaatgaacaatgtaagacatgaaactggtgctgaacaggtttctgcataataggcccctctgttcatctcttggctacaagttatttaatttggatgctttagtcctgccaataagtcctatcatatctctatctgaacttggaagccttttttctgaaaaaataaacattgaaggcattttttctacttggtccatcccattttagtgggcaaaatggcatcaagggcggagctaccattgaaacaaggtggtgcactaccatcgaaaacctagaaaatttcgatggaactgtgcattctagcgtttataagtgagaaatcttggatttaggggggtggggggggggggggggggtgggtgggtggttgggttcctgtgcaccacccaagcttaatgtggctccgccactgaatgccatgtgggtttgaacagcatgaaccatgtgctacatattaataagctgacacaaacattttaaatattactaaatatgctattggaattatctttaataaggaatgctttgcaactccattttttttctttgtgcttatgcagttgctacattatgttagttagccttctagtaataataggtaaatcttgtgatttgtggcataacAttttctctattgttttctgtacattagttatgacttgcctttgttcccctcaaacaacacggttcttctgttatttattacatggatagatgagcatgccaatggcctggtgctacagctcatgaggaaactttcgaaatataatttaaatacgtgaatggagtgtgctcattctggaaagctgttttgacttgtgttgatgcaaaacattgtcggatcggttactacactccaattttatgttctctaaacagattaaatattattcttttttgggatttcaagcctcatgagtagctgcatacagaacaaatctagtaattcatttattgaattctttactgtgctgagtacatctctgcagttcccagaaactttagactgcttgaagagcttgagcgaggtgagaaGGgcattggtgatgggacagtgagctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcattggccctcctaatgtatgttgtataacacccatTAGtagatattaactgcatttgcttctgtatgctcaaactgaatgatcttttacattcaatttgtcttgcagactgttcatgagggacgaatctatcagttgaagttgttctgtgatacagactatccagacagaccacctactgttcgattccagactcgaatcaatatgtcatgtgtgaatcaagaaactggaatggtacatgtccacttgctttcctttaagctaaagtagttggtgaatcattttattggcgtagtacttacaaggagctactttctaggttgaaccaagtctattccccatgcttggtaactggcaaagagaacatacaatgcaagacatcctgatcggcttaaaaaaggagatgtctgctcctcagaatcgtaggctccatcaaccccatgatggtaatttccatatctctgcttcagtgaatttgatctacagcctcgtcgttttcccttaagcttataaaccgcaaccaaaatttgagttttaaaacttaatttcggagttaattttagtgcTtttttttatcgtagtttatttctagcatttgtttttaaatcgctgaggacacgtatataaaagtttcgctcacaaattattttttgggcactgataagcagttacagttTAtaatcagcataagcgaaacaatgaggttgctacttgctagactgaagttgcatgttgggttctgaacctagttgctgtttctttctgcaggcaatgaagatcaaagagtagaacagaaagggctatcgcttaggtgtgtcatcatgtaagagatgcgaattgcaatgtacagtattattaaattgagtagcatcaggcgcaaaaaagagaacccatgatctcctgtaatttggcagtaactacattggatccaaaccgtgctgtcgcctcaataaaatgtcggcaacttcgtt
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| CDS seq | atggggtccgagggatccgccggggtcgtcgtcgttcccagaaactttagactgcttgaagagcttgagcgaggtgagaaGGgcattggtgatgggacagtgagctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcattggccctcctaatactgttcatgagggacgaatctatcagttgaagttgttctgtgatacagactatccagacagaccacctactgttcgattccagactcgaatcaatatgtcatgtgtgaatcaagaaactggaatggtacatgtccacttgctttcctttaagctaaagtag |
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| Protein seq | MGSEGSAGVVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVHVHLLSFKLK |
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| Function | Ubiquitin-conjugating enzyme E2 variant 1C [UniProtKB/Swiss-Prot:Q9SJ44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0031830 | OsLima_03g0031830.01 | Chr03 | 31563594 | 31567690 | + | NAM | ||
| CDS seq | atggggtccgagggatccgccggggtcgtcgtcgttcccagaaactttagactgcttgaagagcttgagcgaggtgagaaGGgcattggtgatgggacagtgagctatggaatggatgatgctgatgacatatatatgcgttcctggacaggaactatcattggccctcctaatactgttcatgagggacgaatctatcagttgaagttgttctgtgatacagactatccagacagaccacctactgttcgattccagactcgaatcaatatgtcatgtgtgaatcaagaaactggaatggtacatgtccacttgctttcctttaagctaaagtag
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| Protein seq | MGSEGSAGVVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMRSWTGTIIGPPNTVHEGRIYQLKLFCDTDYPDRPPTVRFQTRINMSCVNQETGMVHVHLLSFKLK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0031830 | OsLima_03g0031830.02 | Chr03 | 31563481 | 31568391 | + | IsoSeq | ||
| CDS seq | cagtacagtagttggctggttgctaccactacacgagctcgggaggaaggaaggaaggaaggaaggaatcgcaaggcgaagagtcggagctggcggaggaggaggtgctcgcgatggggtccgagggatccgccggggtcgtcgtcgttcccagaaactttagactgcttgaagagcttgagcgaggtgagaaGGgcattggtgatggga
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| Protein seq | QYSSWLVATTTRAREEGRKEGRNRKAKSRSWRRRRCSRWGPRDPPGSSSFPETLDCLKSLSEVRRALVMG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.453053 | 0.522616 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0712300 | RBH | 3.070778 | 2.331971 | 11.116535 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g50440 | RBH | 1.556056 | 1.698918 | 1.901098 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0712300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0032160 | RBH | 0.597408 | 39.878712 | 22.468681 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0031870 | RBH | 1.533441 | 4.724348 | 8.340652 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0031960 | RBH | 0.421146 | 36.814018 | 20.569052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0032040 | RBH | 0.000000 | 0.468096 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0031760 | RBH | 11.719093 | 55.383934 | 39.458458 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0494600 | RBH | 7.8954705 | 8.354903 | 9.9867585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031430 | RBH | 0.195598 | 2.637385 | 2.327016 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0494500 | RBH | 12.3886695 | 6.7392985 | 16.9332735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004670 | SBH | 2.321205 | 0.851779 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0031860 | RBH | 2.012451 | 17.353384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0031830 | RBH | 7.689847 | 11.197292 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0031610 | RBH | 3.071530 | 0.703346 | 4.672884 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031630 | RBH | 0.553879 | 11.004406 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G031610 | RBH | 0.000000 | 4.377227 | 4.788657 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0031480 | RBH | 0.0 | 35.649685 | 15.332437 |
