Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0014110 | OGI:12051860 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:18789430-18792773 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagaacccgctgcttttctcatatgccacccttgttgcaagcaactttctggcaacctcttgcatgttaggccgctcctttggtaaatgatgtgtgcaagcaaggccaatctctagcattgattgaatacagccgtgaactctgcagttgcagtcacgttggttttccttgtttaagttgtccaaatgttcttgcagacactcatcaatgatacttgttgttttatttgggtagttcatctgcacaaaactgataatgctaagcccttccatgaaaatggcattagtgggcctctttccggtgagcatctctagaagcagaacaccgaagctatacacatcacctgcagtagataTgtggccaccggctgcgtattctggaaatacagaatattcagcttatgtggaattgaaaccatgctaaatttgattgcagagatatattgtatatgagtgtgaggtgcaaacctggagcagcatagccaattgttcctctgaagccaactgagctagttgagcaccctgcagataccgagggacaatcatttcggagtttcgctagaccaaagtcgccaatgtgagctcccatatcatcatccagaaggatgttgctaggcttcaaatcacaatgaacaaccggtggttttgtgctgtgatgcagatagtccaacgcatttgccatgtcaatagctatgtttagcctctgtgccaggataatgtggcctgccacatgctcattgcttctctgtgagtgtatgagctcatctaaatttcccttaggcatgaactcatAaacaattgctttgaattcatttcctctggggtctatgctcaagcaagcagtaagtacactgacaagattccgatgttttatgcttctcaaagtttgacactcgacaagAaaagaacgttctgctccttgcatttcaaggttgaagaccttcacggccacatccatttttaggtgactgatgaaacctctgtacacagagccatgtgctccttttccaatcaagttagatggggagaagttattggtggatttagcaagatccatgtatgaaacttgtggcagatgcataccaagaactgaaggcaccatcaaagattttcgttccagtttcttcctgcagaaactagcattggggaaactacaaggattactgttttgagggagcgaggtagtctcctcttcctggaaggtacaacaggacatggggccaaatggagctctgtaatccctccacaaaggttctggtttccagtcaatatgagagcactggcatttgtgaaaaccccatttcttggcacttcaccttgtaaatggttgtaagacagatctaagaTGtgaagcattttgaggctaccaagaaaacctggtacaggtccagacaagctgttatgagaaagatccagtaactgtaaattcttcaggtttgcaagggataaaggaatttttccatcaaggaagttatttcccattataatagtctcaaaagattcacagttgcccagagtctctggtatttctccagctatcttgtttgatgagatgtctatctcagagagttgcttagcgtttccgatttctcgaggtattattccatttaagctattgtgcgacaagtcgaaagtaattgctgcctgaaggttgaacatgcctactggtattctgccattgagttgattgtcactaaagtccaagaactgtaaatgttgaagttgtacaatagttgctggtatgggcccttcaaatttatttgatgcgagggtcaaactaaaaagtcgagagaggttgccgatcgatgatggaattggcccgacaaaactatttttgctaaggaatagtttttccatgattttgaagttccctacccagttggttatcaagccatcaaaattattggaatctagtcccagacttgtaaggccttgaaggttcccaatgctagaaggaacagaaccagagaTtttgttgttacccaacaggaggtactgtagctgggaagataggttgccgacagaacttggtggctgccctgctagCtggttttggaatagtgcaagcacttGgagagagctgcagtttgtcaacacatccataaacatccagctttgtctgtcatttgctaccaggtgattaaattcaagattcaaccacgtgagttttcctaggcttcctagagttgccggcacatgaccggtgaaagaattgctggataaatcgattttcacaagctgggaagcattggaaagcgaaggaggaatcggccccgcgaactggttgtaatccaaggatattagttgcaagttgtggagagtggtgccaagatcagatggcaagtatggcatcctcaactgattcctttctaggcacatcgctttcagagaggAgagattgaagatgctttggggaattccttgtgacaagttgtttgaacctatggctagcactgtcaagcttgacagtcgacccaattcactcggtattcttccttggagctgattttccatggttataagctcgctcaaacttgatatatttcctagtgagggtgggatcactccagaaaggttattccgtgacagatctaaactgccgagcttcgacaaggatgcgacctcggttgggatttctcccacaaaatggttcatgagcaagtgtagttccctcaggcttgtgcagttggcgagctcagtgggaattcttccttgcagtgagttactctcaaaggtgaggatctcgagacggcgcaaatggccgaggggaggtatttcgctggcaaagctattgtacgacaagttgagaaccgtaaggaatgtcatgttcccgagggagggtgagatgatgccgaccaaacctaggtcagagacgtccaggacggtggcgcggcgaggatgtttggtgttgtgacaggaaacccctctccactcacagaagtgactgctgccattccaagaggctagggctccatgaggatccacggagatactcttcttgaaatCCagtaaggacatgtgatctatctcctctgcatatgcaatggagtaggtgcctctgtctctgtgagctccagcaagcaaagcagatatgatgaagaagtacagcatttcagcagttggcttcattttgtagttgacctctgcagcaataagttgtcatgttaagaagaagtaaccaggcaagaagtatgagcaggatgaatacaaaattctaatttgtggtaacttctaatttagggatattttctttcattcatttttttgtaacaatcacattcagttctttgttttgattgttatagattgatgaagaataaggttaatggagctttaacaattca
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| CDS seq | atgaagccaactgctgaaatgctgtacttcttcatcatatctgctttgcttgctggagctcacagagacagaggcacctactccattgcatatgcagaggagatagatcacatgtccttactGGatttcaagaagagtatctccgtggatcctcatggagccctagcctcttggaatggcagcagtcacttctgtgagtggagaggggtttcctgtcacaacaccaaacatcctcgccgcgccaccgtcctggacgtctctgacctaggtttggtcggcatcatctcaccctccctcgggaacatgacattccttacggttctcaacttgtcgtacaatagctttgccagcgaaatacctcccctcggccatttgcgccgtctcgagatcctcacctttgagagtaactcactgcaaggaagaattcccactgagctcgccaactgcacaagcctgagggaactacacttgctcatgaaccattttgtgggagaaatcccaaccgaggtcgcatccttgtcgaagctcggcagtttagatctgtcacggaataacctttctggagtgatcccaccctcactaggaaatatatcaagtttgagcgagcttataaccatggaaaatcagctccaaggaagaataccgagtgaattgggtcgactgtcaagcttgacagtgctagccataggttcaaacaacttgtcacaaggaattccccaaagcatcttcaatctcTcctctctgaaagcgatgtgcctagaaaggaatcagttgaggatgccatacttgccatctgatcttggcaccactctccacaacttgcaactaatatccttggattacaaccagttcgcggggccgattcctccttcgctttccaatgcttcccagcttgtgaaaatcgatttatccagcaattctttcaccggtcatgtgccggcaactctaggaagcctaggaaaactcacgtggttgaatcttgaatttaatcacctggtagcaaatgacagacaaagctggatgtttatggatgtgttgacaaactgcagctctctcCaagtgcttgcactattccaaaaccaGctagcagggcagccaccaagttctgtcggcaacctatcttcccagctacagtacctcctgttgggtaacaacaaaAtctctggttctgttccttctagcattgggaaccttcaaggccttacaagtctgggactagattccaataattttgatggcttgataaccaactgggtagggaacttcaaaatcatggaaaaactattccttagcaaaaatagttttgtcgggccaattccatcatcgatcggcaacctctctcgactttttagtttgaccctcgcatcaaataaatttgaagggcccataccagcaactattgtacaacttcaacatttacagttcttggactttagtgacaatcaactcaatggcagaataccagtaggcatgttcaaccttcaggcagcaattactttcgacttgtcgcacaatagcttaaatggaataatacctcgagaaatcggaaacgctaagcaactctctgagatagacatctcatcaaacaagatagctggagaaataccagagactctgggcaactgtgaatcttttgagactattataatgggaaataacttccttgatggaaaaattcctttatcccttgcaaacctgaagaatttacagttactggatctttctcataacagcttgtctggacctgtaccaggttttcttggtagcctcaaaatgcttcaCAtcttagatctgtcttacaaccatttacaaggtgaagtgccaagaaatggggttttcacaaatgccagtgctctcatattgactggaaaccagaacctttgtggagggattacagagctccatttggccccatgtcctgttgtaccttccaggaagaggagactacctcgctccctcaaaacagaagaaactggaacgaaaatctttgatggtgccttcagttcttggtatgcatctgccacaaaccccagaggaaatgaattcaaagcaattgttTatgagttcatgcctaagggaaatttagatgagctcatacactcacagagaagcaatgagcatgtggcaggccacattatcctggcacagaggctaaacatagctattgacatggcaaatgcgttggactatctgcatcacagcacaaaaccaccggttgttcattgtgatttgaagcctagcaacatccttctggatgatgatatgggagctcacattggcgactttggtctagcgaaactccgaaatgattgtccctcggtatctgcagggtgctcaactagctcagttggcttcagaggaacaattggctatgctgctccagaatacgcagccggtggccacAtatctactgcaggtgatgtgtatagcttcggtgttctgcttctagagatgctcaccggaaagaggcccactaatgccattttcatggaagggcttagcattatcagttttgtgcagatgaactacccaaataaaacaacaagtatcattgatgagtgtctgcaagaacatttggacaacttaaacaaggaaaaccaacgtgactgcaactgcagagttcacggctgtattcaatcaatgctagagattggccttgcttgcacacatcatttaccaaaggagcggcctaacatgcaagaggttgccagaaagttgcttgcaacaagggtggcatatgagaaaagcagcgggttctga
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| Protein seq | MKPTAEMLYFFIISALLAGAHRDRGTYSIAYAEEIDHMSLLDFKKSISVDPHGALASWNGSSHFCEWRGVSCHNTKHPRRATVLDVSDLGLVGIISPSLGNMTFLTVLNLSYNSFASEIPPLGHLRRLEILTFESNSLQGRIPTELANCTSLRELHLLMNHFVGEIPTEVASLSKLGSLDLSRNNLSGVIPPSLGNISSLSELITMENQLQGRIPSELGRLSSLTVLAIGSNNLSQGIPQSIFNLSSLKAMCLERNQLRMPYLPSDLGTTLHNLQLISLDYNQFAGPIPPSLSNASQLVKIDLSSNSFTGHVPATLGSLGKLTWLNLEFNHLVANDRQSWMFMDVLTNCSSLQVLALFQNQLAGQPPSSVGNLSSQLQYLLLGNNKISGSVPSSIGNLQGLTSLGLDSNNFDGLITNWVGNFKIMEKLFLSKNSFVGPIPSSIGNLSRLFSLTLASNKFEGPIPATIVQLQHLQFLDFSDNQLNGRIPVGMFNLQAAITFDLSHNSLNGIIPREIGNAKQLSEIDISSNKIAGEIPETLGNCESFETIIMGNNFLDGKIPLSLANLKNLQLLDLSHNSLSGPVPGFLGSLKMLHILDLSYNHLQGEVPRNGVFTNASALILTGNQNLCGGITELHLAPCPVVPSRKRRLPRSLKTEETGTKIFDGAFSSWYASATNPRGNEFKAIVYEFMPKGNLDELIHSQRSNEHVAGHIILAQRLNIAIDMANALDYLHHSTKPPVVHCDLKPSNILLDDDMGAHIGDFGLAKLRNDCPSVSAGCSTSSVGFRGTIGYAAPEYAAGGHISTAGDVYSFGVLLLEMLTGKRPTNAIFMEGLSIISFVQMNYPNKTTSIIDECLQEHLDNLNKENQRDCNCRVHGCIQSMLEIGLACTHHLPKERPNMQEVARKLLATRVAYEKSSGF |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0014110 | OsLima_12g0014110.01 | Chr12 | 18789430 | 18792773 | - | NAM | ||
| CDS seq | atgaagccaactgctgaaatgctgtacttcttcatcatatctgctttgcttgctggagctcacagagacagaggcacctactccattgcatatgcagaggagatagatcacatgtccttactGGatttcaagaagagtatctccgtggatcctcatggagccctagcctcttggaatggcagcagtcacttctgtgagtggagaggggtttcctgtcacaacaccaaacatcctcgccgcgccaccgtcctggacgtctctgacctaggtttggtcggcatcatctcaccctccctcgggaacatgacattccttacggttctcaacttgtcgtacaatagctttgccagcgaaatacctcccctcggccatttgcgccgtctcgagatcctcacctttgagagtaactcactgcaaggaagaattcccactgagctcgccaactgcacaagcctgagggaactacacttgctcatgaaccattttgtgggagaaatcccaaccgaggtcgcatccttgtcgaagctcggcagtttagatctgtcacggaataacctttctggagtgatcccaccctcactaggaaatatatcaagtttgagcgagcttataaccatggaaaatcagctccaaggaagaataccgagtgaattgggtcgactgtcaagcttgacagtgctagccataggttcaaacaacttgtcacaaggaattccccaaagcatcttcaatctcTcctctctgaaagcgatgtgcctagaaaggaatcagttgaggatgccatacttgccatctgatcttggcaccactctccacaacttgcaactaatatccttggattacaaccagttcgcggggccgattcctccttcgctttccaatgcttcccagcttgtgaaaatcgatttatccagcaattctttcaccggtcatgtgccggcaactctaggaagcctaggaaaactcacgtggttgaatcttgaatttaatcacctggtagcaaatgacagacaaagctggatgtttatggatgtgttgacaaactgcagctctctcCaagtgcttgcactattccaaaaccaGctagcagggcagccaccaagttctgtcggcaacctatcttcccagctacagtacctcctgttgggtaacaacaaaAtctctggttctgttccttctagcattgggaaccttcaaggccttacaagtctgggactagattccaataattttgatggcttgataaccaactgggtagggaacttcaaaatcatggaaaaactattccttagcaaaaatagttttgtcgggccaattccatcatcgatcggcaacctctctcgactttttagtttgaccctcgcatcaaataaatttgaagggcccataccagcaactattgtacaacttcaacatttacagttcttggactttagtgacaatcaactcaatggcagaataccagtaggcatgttcaaccttcaggcagcaattactttcgacttgtcgcacaatagcttaaatggaataatacctcgagaaatcggaaacgctaagcaactctctgagatagacatctcatcaaacaagatagctggagaaataccagagactctgggcaactgtgaatcttttgagactattataatgggaaataacttccttgatggaaaaattcctttatcccttgcaaacctgaagaatttacagttactggatctttctcataacagcttgtctggacctgtaccaggttttcttggtagcctcaaaatgcttcaCAtcttagatctgtcttacaaccatttacaaggtgaagtgccaagaaatggggttttcacaaatgccagtgctctcatattgactggaaaccagaacctttgtggagggattacagagctccatttggccccatgtcctgttgtaccttccaggaagaggagactacctcgctccctcaaaacagaagaaactggaacgaaaatctttgatggtgccttcagttcttggtatgcatctgccacaaaccccagaggaaatgaattcaaagcaattgttTatgagttcatgcctaagggaaatttagatgagctcatacactcacagagaagcaatgagcatgtggcaggccacattatcctggcacagaggctaaacatagctattgacatggcaaatgcgttggactatctgcatcacagcacaaaaccaccggttgttcattgtgatttgaagcctagcaacatccttctggatgatgatatgggagctcacattggcgactttggtctagcgaaactccgaaatgattgtccctcggtatctgcagggtgctcaactagctcagttggcttcagaggaacaattggctatgctgctccagaatacgcagccggtggccacAtatctactgcaggtgatgtgtatagcttcggtgttctgcttctagagatgctcaccggaaagaggcccactaatgccattttcatggaagggcttagcattatcagttttgtgcagatgaactacccaaataaaacaacaagtatcattgatgagtgtctgcaagaacatttggacaacttaaacaaggaaaaccaacgtgactgcaactgcagagttcacggctgtattcaatcaatgctagagattggccttgcttgcacacatcatttaccaaaggagcggcctaacatgcaagaggttgccagaaagttgcttgcaacaagggtggcatatgagaaaagcagcgggttctga
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| Protein seq | MKPTAEMLYFFIISALLAGAHRDRGTYSIAYAEEIDHMSLLDFKKSISVDPHGALASWNGSSHFCEWRGVSCHNTKHPRRATVLDVSDLGLVGIISPSLGNMTFLTVLNLSYNSFASEIPPLGHLRRLEILTFESNSLQGRIPTELANCTSLRELHLLMNHFVGEIPTEVASLSKLGSLDLSRNNLSGVIPPSLGNISSLSELITMENQLQGRIPSELGRLSSLTVLAIGSNNLSQGIPQSIFNLSSLKAMCLERNQLRMPYLPSDLGTTLHNLQLISLDYNQFAGPIPPSLSNASQLVKIDLSSNSFTGHVPATLGSLGKLTWLNLEFNHLVANDRQSWMFMDVLTNCSSLQVLALFQNQLAGQPPSSVGNLSSQLQYLLLGNNKISGSVPSSIGNLQGLTSLGLDSNNFDGLITNWVGNFKIMEKLFLSKNSFVGPIPSSIGNLSRLFSLTLASNKFEGPIPATIVQLQHLQFLDFSDNQLNGRIPVGMFNLQAAITFDLSHNSLNGIIPREIGNAKQLSEIDISSNKIAGEIPETLGNCESFETIIMGNNFLDGKIPLSLANLKNLQLLDLSHNSLSGPVPGFLGSLKMLHILDLSYNHLQGEVPRNGVFTNASALILTGNQNLCGGITELHLAPCPVVPSRKRRLPRSLKTEETGTKIFDGAFSSWYASATNPRGNEFKAIVYEFMPKGNLDELIHSQRSNEHVAGHIILAQRLNIAIDMANALDYLHHSTKPPVVHCDLKPSNILLDDDMGAHIGDFGLAKLRNDCPSVSAGCSTSSVGFRGTIGYAAPEYAAGGHISTAGDVYSFGVLLLEMLTGKRPTNAIFMEGLSIISFVQMNYPNKTTSIIDECLQEHLDNLNKENQRDCNCRVHGCIQSMLEIGLACTHHLPKERPNMQEVARKLLATRVAYEKSSGF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0498650 | SBH | 0.621047 | 0.605169 | 1.120190 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31470 | SBH | 0.524899 | 0.543281 | 0.321447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0107700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014090 | SBH | 0.146151 | 0.000000 | 1.201783 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014260 | SBH | 0.050427 | 1.337043 | 0.442937 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014150 | SBH | 0.654747 | 0.538009 | 2.992458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013960 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0259300 | RBH | 0.010403 | 3.172238 | 0.013012 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014000 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0283800 | RBH | 2.5881425 | 13.5405615 | 5.512146 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014300 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014270 | RBH | 2.642038 | 15.824047 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021990 | SBH | 0.0 | 0.0 | 0.313667 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014210 | RBH | 0.000000 | 0.297767 | 1.019125 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014010 | RBH | 0.397060 | 4.677231 | 0.163455 |
