Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0498650 | OGI:12051120 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:18928857-18931566 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACCAATCCCTTCCCCTTCTCCAAGTCTGTATCTGCTCTGTTCTTCTCTGTTCTTCTCTATTCCTTCCAAATTCCAGATTCTATCTCTAATTCTTCTTGCTGAGATCTCGGTTCGTAACAAGCATCTCGTCATGCAGTTCAACAATCTCACTGGGACACTTCCTCCCTGCGCCGGCAACAGGCTGCCCCGCCTCAAGGTGCTCAGTGTCGACAGAAACCAGCTCCATGGTGCCATTCCGGTCTCTCTCTGCAATTCCTCCAAGCTCGAAGTGATCCAGATGATGAAGAATTCCTTCTCAGGAGTCATCCCGGATTGCCTTGGAGCTCACCTCCAGAACCTGTGGGAACTGACCCTGGATGATAACCAGCTAGAAGCAAATTCTGATTCCGATTGGAGATTTCTGGACAGTCTGACAAATTGCAGCAATCTGAAGGTAATTGGTCTGGCTGGAAACAAGCTGCGAGGACTTCTTCCGGGCTCGATTGCGAACCTTTCGACGAGCATGGAGTTCTTGAGCATATACAACAACATGATACATGGGCAAATACCTCAGGGAATTGGCAACCTTGTCAACCTGGACTCGATTTACATGCATCTGAATAACCTTGCTGGCACCATTCCTGACTCAATTGGCAAGCTTAAGAAGCTGAGTAACCTGTACTTGTATGACAACAACTTGTCAGGGCAAATTCCAGCAACAATTGGCAATCTTACCATGCTGAGCAGACTATCCCTCAACGAGAACATGCTAACTGGCTCCATACCATCCAGTCTTGGCAACTGCCCTTTGGAGACACTGGAACTGCAAAACAATCGCCTCACTGGTCCAATACCCAAAGAAGTTCTCCAGATATCTACTCTCTCCACCTCTGCCAATTTCCAAAGGAACATGCTAACAGGATCATTGCCATCAGAAGTTGGTGACCTGAAAAACCTCCAAACTTTGGATGTATCTGGAAATAGGTTAACTGGGGAAATTCCTGCCTCTCTCGGCAATTGTCAAATCTTACAATATTGCATCATGAAAGGAAATTTTCTTCAAGGAGAAATTCCATCCTCAATCGGACAATTGAGGGGTCTCTTGGTTCTTGATCTATCAGGAAACAACTTGTCTGGTTGCATTCCGGACTTACTCAGTAACATGAAAGGTATTGAACGCCTGGATATCTCCTTCAATAACTTTGAGGGTGAAGTTCCAAAACGTGGAATATTTCTTAATGCCAGTGCCTTTTCGGTCGAGGGGATCACTGGCTTGTGTGGGGGTATCCCTGAGCTGAAATTGCCACCTTGCTCAAACTACATCAGTACTACCAACAAGCGATTGCACAAGCTTGTCATGGCCATCTCCACAGCCTTTGCCATTCTGGGTATTGCTTTACTGCTTGCACTATTTGTATTCTTTCGTCAAACAAGGAATTCAAGAAAGGGAGAGCATGCCTTACTGCTCATCAGTGATCAGCATGTCAGGGTTTCATATACTGAGTTGGTGACTTCAACAAATGGTTTTGCTTCTGAGAACCTCGTAGGTGTTGGAAGCTTCGGCTCTGTCTACAAGGGAACAATGATGAGCAATGAAGAAGAGGTGGTTGTCGCTGTGAAGGTGCTCAACCTCCAGCAGCGAGGAGCATCCCAAAGTTTTGTTGCGGAATGTGAGACTTTGAGATGTGCTAGACACAGGAACCTTGTGAAAATTTTGACGGTGTGCTCGAGCATTGATTCGAGAGGTCTTGATTTCAAAGCCATTGTATTTGATTTTCTACCAAATGGAAACCTACACCAGTGGCTGCACCCCAGGGAACATGGCAACCAAACTGGACTTAGTCTTATCCAGCGGATCAACATTGCCATTGATGTAGCTTCAGCACTTGAATATCTTCACCAATATAGACCAGCCCCAATAGTTCATTGCGATTTTAAGCCAAGCAATATTCTCCTTGATAATGACATGGTTGCCCATGTTGGTGATTTTGGGCTTGCGAGATTTGTTGATCATGGTCAACATAGCCTCCCAGATATATCAAGTGGTTGGGCTACAATAAGGGGAACCATTGGATATGCTGCTCCAGGTCAGGTTCAAGCTATACCCTATATACATGTTCTCTACAAATTTCTATAGATTCATTTCTCCCTTTTGTAATCATTGCATGGTAAAAAGCACTACCATACACCTGCAAGTAAAAATTAACTTTACTAAAAAAACAAAACAATATTAGTAGACAAAATGCTAAAACTTGTTTTATTTGATGAAGATAGTAGCGATTTATATGGTTGCAATATTTATGTGTCTCAAACCAGAGTATGGACTCGGCAACAAAGTCTCGATCTACGGCGACACATACAGCTTCGGAGTACTACTGCTGGAAATCTTCACAGGAAAAAGGCCAACGGATGCTGATTTCGCGCAAGATCTCAGCCTTCACAGGTATGTGCAGATCGCGCTGAGAGATCACCAAGTCGCCAGCGTGATAGACGAACAGCTACTACTGTCAGTACAAGACGGCGAAAATGAAGGAAGAGCATCCAACAGCTCCAGTAGTAGTAGCAGCACCAGAGAAGTGATTATTGCGTACATCGCTTCGATTCTGCAGATTGGAATTCGGTGTTCGGAGGATGTTCCAACAGATCGCCTGCTGATCTGTGATGCCCTGAGAGAGCTTCAGGGGTTAGACGACAAGTATCGCGTGCACCTACGAATTGGGGGAAGATGA
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| CDS seq | ATACCAATCCCTTCCCCTTCTCCAAGTCTGTATCTGCTCTGTTCTTCTCTGTTCTTCTCTATTCCTTCCAAATTCCAGATTCTATCTCTAATTCTTCTTGCTGAGATCTCGGTTCGTAACAAGCATCTCGTCATGCAGTTCAACAATCTCACTGGGACACTTCCTCCCTGCGCCGGCAACAGGCTGCCCCGCCTCAAGGTGCTCAGTGTCGACAGAAACCAGCTCCATGGTGCCATTCCGGTCTCTCTCTGCAATTCCTCCAAGCTCGAAGTGATCCAGATGATGAAGAATTCCTTCTCAGGAGTCATCCCGGATTGCCTTGGAGCTCACCTCCAGAACCTGTGGGAACTGACCCTGGATGATAACCAGCTAGAAGCAAATTCTGATTCCGATTGGAGATTTCTGGACAGTCTGACAAATTGCAGCAATCTGAAGGTAATTGGTCTGGCTGGAAACAAGCTGCGAGGACTTCTTCCGGGCTCGATTGCGAACCTTTCGACGAGCATGGAGTTCTTGAGCATATACAACAACATGATACATGGGCAAATACCTCAGGGAATTGGCAACCTTGTCAACCTGGACTCGATTTACATGCATCTGAATAACCTTGCTGGCACCATTCCTGACTCAATTGGCAAGCTTAAGAAGCTGAGTAACCTGTACTTGTATGACAACAACTTGTCAGGGCAAATTCCAGCAACAATTGGCAATCTTACCATGCTGAGCAGACTATCCCTCAACGAGAACATGCTAACTGGCTCCATACCATCCAGTCTTGGCAACTGCCCTTTGGAGACACTGGAACTGCAAAACAATCGCCTCACTGGTCCAATACCCAAAGAAGTTCTCCAGATATCTACTCTCTCCACCTCTGCCAATTTCCAAAGGAACATGCTAACAGGATCATTGCCATCAGAAGTTGGTGACCTGAAAAACCTCCAAACTTTGGATGTATCTGGAAATAGGTTAACTGGGGAAATTCCTGCCTCTCTCGGCAATTGTCAAATCTTACAATATTGCATCATGAAAGGAAATTTTCTTCAAGGAGAAATTCCATCCTCAATCGGACAATTGAGGGGTCTCTTGGTTCTTGATCTATCAGGAAACAACTTGTCTGGTTGCATTCCGGACTTACTCAGTAACATGAAAGGTATTGAACGCCTGGATATCTCCTTCAATAACTTTGAGGGTGAAGTTCCAAAACGTGGAATATTTCTTAATGCCAGTGCCTTTTCGGTCGAGGGGATCACTGGCTTGTGTGGGGGTATCCCTGAGCTGAAATTGCCACCTTGCTCAAACTACATCAGTACTACCAACAAGCGATTGCACAAGCTTGTCATGGCCATCTCCACAGCCTTTGCCATTCTGGGTATTGCTTTACTGCTTGCACTATTTGTATTCTTTCGTCAAACAAGGAATTCAAGAAAGGGAGAGCATGCCTTACTGCTCATCAGTGATCAGCATGTCAGGGTTTCATATACTGAGTTGGTGACTTCAACAAATGGTTTTGCTTCTGAGAACCTCGTAGGTGTTGGAAGCTTCGGCTCTGTCTACAAGGGAACAATGATGAGCAATGAAGAAGAGGTGGTTGTCGCTGTGAAGGTGCTCAACCTCCAGCAGCGAGGAGCATCCCAAAGTTTTGTTGCGGAATGTGAGACTTTGAGATGTGCTAGACACAGGAACCTTGTGAAAATTTTGACGGTGTGCTCGAGCATTGATTCGAGAGGTCTTGATTTCAAAGCCATTGTATTTGATTTTCTACCAAATGGAAACCTACACCAGTGGCTGCACCCCAGGGAACATGGCAACCAAACTGGACTTAGTCTTATCCAGCGGATCAACATTGCCATTGATGTAGCTTCAGCACTTGAATATCTTCACCAATATAGACCAGCCCCAATAGTTCATTGCGATTTTAAGCCAAGCAATATTCTCCTTGATAATGACATGGTTGCCCATGTTGGTGATTTTGGGCTTGCGAGATTTGTTGATCATGGTCAACATAGCCTCCCAGATATATCAAGTGGTTGGGCTACAATAAGGGGAACCATTGGATATGCTGCTCCAGAGTATGGACTCGGCAACAAAGTCTCGATCTACGGCGACACATACAGCTTCGGAGTACTACTGCTGGAAATCTTCACAGGAAAAAGGCCAACGGATGCTGATTTCGCGCAAGATCTCAGCCTTCACAGGTATGTGCAGATCGCGCTGAGAGATCACCAAGTCGCCAGCGTGATAGACGAACAGCTACTACTGTCAGTACAAGACGGCGAAAATGAAGGAAGAGCATCCAACAGCTCCAGTAGTAGTAGCAGCACCAGAGAAGTGATTATTGCGTACATCGCTTCGATTCTGCAGATTGGAATTCGGTGTTCGGAGGATGTTCCAACAGATCGCCTGCTGATCTGTGATGCCCTGAGAGAGCTTCAGGGGTTAGACGACAAGTATCGCGTGCACCTACGAATTGGGGGAAGATGA
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| Protein seq | IPIPSPSPSLYLLCSSLFFSIPSKFQILSLILLAEISVRNKHLVMQFNNLTGTLPPCAGNRLPRLKVLSVDRNQLHGAIPVSLCNSSKLEVIQMMKNSFSGVIPDCLGAHLQNLWELTLDDNQLEANSDSDWRFLDSLTNCSNLKVIGLAGNKLRGLLPGSIANLSTSMEFLSIYNNMIHGQIPQGIGNLVNLDSIYMHLNNLAGTIPDSIGKLKKLSNLYLYDNNLSGQIPATIGNLTMLSRLSLNENMLTGSIPSSLGNCPLETLELQNNRLTGPIPKEVLQISTLSTSANFQRNMLTGSLPSEVGDLKNLQTLDVSGNRLTGEIPASLGNCQILQYCIMKGNFLQGEIPSSIGQLRGLLVLDLSGNNLSGCIPDLLSNMKGIERLDISFNNFEGEVPKRGIFLNASAFSVEGITGLCGGIPELKLPPCSNYISTTNKRLHKLVMAISTAFAILGIALLLALFVFFRQTRNSRKGEHALLLISDQHVRVSYTELVTSTNGFASENLVGVGSFGSVYKGTMMSNEEEVVVAVKVLNLQQRGASQSFVAECETLRCARHRNLVKILTVCSSIDSRGLDFKAIVFDFLPNGNLHQWLHPREHGNQTGLSLIQRINIAIDVASALEYLHQYRPAPIVHCDFKPSNILLDNDMVAHVGDFGLARFVDHGQHSLPDISSGWATIRGTIGYAAPEYGLGNKVSIYGDTYSFGVLLLEIFTGKRPTDADFAQDLSLHRYVQIALRDHQVASVIDEQLLLSVQDGENEGRASNSSSSSSSTREVIIAYIASILQIGIRCSEDVPTDRLLICDALRELQGLDDKYRVHLRIGGR |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0498650 | OsNip_12t0498650-00 | Chr12 | 18928857 | 18931566 | + | RAP2018-11-26 | ||
| CDS seq | ATACCAATCCCTTCCCCTTCTCCAAGTCTGTATCTGCTCTGTTCTTCTCTGTTCTTCTCTATTCCTTCCAAATTCCAGATTCTATCTCTAATTCTTCTTGCTGAGATCTCGGTTCGTAACAAGCATCTCGTCATGCAGTTCAACAATCTCACTGGGACACTTCCTCCCTGCGCCGGCAACAGGCTGCCCCGCCTCAAGGTGCTCAGTGTCGACAGAAACCAGCTCCATGGTGCCATTCCGGTCTCTCTCTGCAATTCCTCCAAGCTCGAAGTGATCCAGATGATGAAGAATTCCTTCTCAGGAGTCATCCCGGATTGCCTTGGAGCTCACCTCCAGAACCTGTGGGAACTGACCCTGGATGATAACCAGCTAGAAGCAAATTCTGATTCCGATTGGAGATTTCTGGACAGTCTGACAAATTGCAGCAATCTGAAGGTAATTGGTCTGGCTGGAAACAAGCTGCGAGGACTTCTTCCGGGCTCGATTGCGAACCTTTCGACGAGCATGGAGTTCTTGAGCATATACAACAACATGATACATGGGCAAATACCTCAGGGAATTGGCAACCTTGTCAACCTGGACTCGATTTACATGCATCTGAATAACCTTGCTGGCACCATTCCTGACTCAATTGGCAAGCTTAAGAAGCTGAGTAACCTGTACTTGTATGACAACAACTTGTCAGGGCAAATTCCAGCAACAATTGGCAATCTTACCATGCTGAGCAGACTATCCCTCAACGAGAACATGCTAACTGGCTCCATACCATCCAGTCTTGGCAACTGCCCTTTGGAGACACTGGAACTGCAAAACAATCGCCTCACTGGTCCAATACCCAAAGAAGTTCTCCAGATATCTACTCTCTCCACCTCTGCCAATTTCCAAAGGAACATGCTAACAGGATCATTGCCATCAGAAGTTGGTGACCTGAAAAACCTCCAAACTTTGGATGTATCTGGAAATAGGTTAACTGGGGAAATTCCTGCCTCTCTCGGCAATTGTCAAATCTTACAATATTGCATCATGAAAGGAAATTTTCTTCAAGGAGAAATTCCATCCTCAATCGGACAATTGAGGGGTCTCTTGGTTCTTGATCTATCAGGAAACAACTTGTCTGGTTGCATTCCGGACTTACTCAGTAACATGAAAGGTATTGAACGCCTGGATATCTCCTTCAATAACTTTGAGGGTGAAGTTCCAAAACGTGGAATATTTCTTAATGCCAGTGCCTTTTCGGTCGAGGGGATCACTGGCTTGTGTGGGGGTATCCCTGAGCTGAAATTGCCACCTTGCTCAAACTACATCAGTACTACCAACAAGCGATTGCACAAGCTTGTCATGGCCATCTCCACAGCCTTTGCCATTCTGGGTATTGCTTTACTGCTTGCACTATTTGTATTCTTTCGTCAAACAAGGAATTCAAGAAAGGGAGAGCATGCCTTACTGCTCATCAGTGATCAGCATGTCAGGGTTTCATATACTGAGTTGGTGACTTCAACAAATGGTTTTGCTTCTGAGAACCTCGTAGGTGTTGGAAGCTTCGGCTCTGTCTACAAGGGAACAATGATGAGCAATGAAGAAGAGGTGGTTGTCGCTGTGAAGGTGCTCAACCTCCAGCAGCGAGGAGCATCCCAAAGTTTTGTTGCGGAATGTGAGACTTTGAGATGTGCTAGACACAGGAACCTTGTGAAAATTTTGACGGTGTGCTCGAGCATTGATTCGAGAGGTCTTGATTTCAAAGCCATTGTATTTGATTTTCTACCAAATGGAAACCTACACCAGTGGCTGCACCCCAGGGAACATGGCAACCAAACTGGACTTAGTCTTATCCAGCGGATCAACATTGCCATTGATGTAGCTTCAGCACTTGAATATCTTCACCAATATAGACCAGCCCCAATAGTTCATTGCGATTTTAAGCCAAGCAATATTCTCCTTGATAATGACATGGTTGCCCATGTTGGTGATTTTGGGCTTGCGAGATTTGTTGATCATGGTCAACATAGCCTCCCAGATATATCAAGTGGTTGGGCTACAATAAGGGGAACCATTGGATATGCTGCTCCAGAGTATGGACTCGGCAACAAAGTCTCGATCTACGGCGACACATACAGCTTCGGAGTACTACTGCTGGAAATCTTCACAGGAAAAAGGCCAACGGATGCTGATTTCGCGCAAGATCTCAGCCTTCACAGGTATGTGCAGATCGCGCTGAGAGATCACCAAGTCGCCAGCGTGATAGACGAACAGCTACTACTGTCAGTACAAGACGGCGAAAATGAAGGAAGAGCATCCAACAGCTCCAGTAGTAGTAGCAGCACCAGAGAAGTGATTATTGCGTACATCGCTTCGATTCTGCAGATTGGAATTCGGTGTTCGGAGGATGTTCCAACAGATCGCCTGCTGATCTGTGATGCCCTGAGAGAGCTTCAGGGGTTAGACGACAAGTATCGCGTGCACCTACGAATTGGGGGAAGATGA
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| Protein seq | IPIPSPSPSLYLLCSSLFFSIPSKFQILSLILLAEISVRNKHLVMQFNNLTGTLPPCAGNRLPRLKVLSVDRNQLHGAIPVSLCNSSKLEVIQMMKNSFSGVIPDCLGAHLQNLWELTLDDNQLEANSDSDWRFLDSLTNCSNLKVIGLAGNKLRGLLPGSIANLSTSMEFLSIYNNMIHGQIPQGIGNLVNLDSIYMHLNNLAGTIPDSIGKLKKLSNLYLYDNNLSGQIPATIGNLTMLSRLSLNENMLTGSIPSSLGNCPLETLELQNNRLTGPIPKEVLQISTLSTSANFQRNMLTGSLPSEVGDLKNLQTLDVSGNRLTGEIPASLGNCQILQYCIMKGNFLQGEIPSSIGQLRGLLVLDLSGNNLSGCIPDLLSNMKGIERLDISFNNFEGEVPKRGIFLNASAFSVEGITGLCGGIPELKLPPCSNYISTTNKRLHKLVMAISTAFAILGIALLLALFVFFRQTRNSRKGEHALLLISDQHVRVSYTELVTSTNGFASENLVGVGSFGSVYKGTMMSNEEEVVVAVKVLNLQQRGASQSFVAECETLRCARHRNLVKILTVCSSIDSRGLDFKAIVFDFLPNGNLHQWLHPREHGNQTGLSLIQRINIAIDVASALEYLHQYRPAPIVHCDFKPSNILLDNDMVAHVGDFGLARFVDHGQHSLPDISSGWATIRGTIGYAAPEYGLGNKVSIYGDTYSFGVLLLEIFTGKRPTDADFAQDLSLHRYVQIALRDHQVASVIDEQLLLSVQDGENEGRASNSSSSSSSTREVIIAYIASILQIGIRCSEDVPTDRLLICDALRELQGLDDKYRVHLRIGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.621047 | 0.605169 | 1.120190 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31470 | RBH | 0.524899 | 0.543281 | 0.321447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0498650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014090 | RBH | 0.146151 | 0.000000 | 1.201783 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014260 | RBH | 0.050427 | 1.337043 | 0.442937 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014150 | RBH | 0.654747 | 0.538009 | 2.992458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013960 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013580 | RBH | 2.856770 | 1.551252 | 5.101980 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0256800 | RBH | 0.9678885 | 4.1016695 | 2.831454 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013750 | RBH | 0.000000 | 0.077825 | 0.399333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0281000 | RBH | 0.862961 | 2.7919995 | 3.933795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013850 | RBH | 0.107367 | 0.059031 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014020 | RBH | 0.0 | 14.913312 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013930 | RBH | 0.382293 | 0.0 | 0.258029 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014120 | RBH | 0.111736 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013940 | RBH | 0.123480 | 1.167029 | 0.101663 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013760 | RBH | 0.395411 | 1.700231 | 1.308676 |
