Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0021990 | OGI:12070340 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:26527720-26531606 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtggtttggtttaagtggatttgcagcagccagacagataaatgagAaaaaaaaaagatgaacagaaggtctccactatgtacagaccaccacagtgatttggttctgcccaaagaaccagctgggcacaaaagaagaagatgtgaagctgcacttgtccagctacactcctacacggttcatcatcatgtatctacaaaatttgttgcttgtcactgcaatcatgagtagtagcaaccattataggaggtactcactcagagttccaggtgctgctcgtagtagagctcactcatgcagggagacaggatctcctcctccagcatcttcaggacagcgctcatcgatggacgctggcctgggtctgcatcggtgcacatcgcagcaatgtcgaggatcgcctcgactgcttccacttccacatcgccgcagttctcatcaatgatctcctccagccgatgctcccccgtcagggtgttgagctgcagaagaaagttggcaattcagattacttttgtcacttgtaagattcataggagggagggaatatagagaggttcttcttacccagccaacaatgttcagtcccttcttgaggaagcatgcatctgtaggcctctttccggtcaccaactcgagcaaaagcactccaaagctatacacatcagatttttcagtagcatggccattttgcaggtattctgtccatataaagttaaaaatgaccaatgtcagtctggatggaaggtgctcaacacagatttaaacaggcagcattggtgttgtcttaaaaaagcatgatttgtctcgatttatctccagtagcttgactacaaagtagtacaaactactacgaatctggatttagtactaggtggtgtctaatcgaatattaggttactatattttaggacggagaaagtgcttaacagtcataagcttctactgttagtctgtactctgtacaatacaaaagggggagcagtaattatgcaggacagcatgaTCttttgttttgattgaaagcatcacagtgtggaatagagaataagtacctggtgctaggtatccaaaagtacccgcgacaacagtggtaacgtgggcatcattatctacaagcagccttgcaaggccaaaatctgatacgcggggttccaagcttctgtccagaaggatgttactggctttgatgtccctgtgcacaatcacgggtgagcaatcgtggtgcaaatacgccagccctcgagcagagcccagggcaatcttcatacgtgcattccagttcaatggttgatcatcctgagcatctcctgaaatcagggacaaggcgtttttgagcatcaggtaatgtaagaagtttttgcacaattgaagcagttgtaaccatgatgatgaaacaatatgcagcaagatgcaagaaagacaataggcttaccatgaaggtagcaatccaaactgcccagctccaagaaatcatatatgagtagtttggctgtaggaagacggcagtatcctcgcagattgacaaggttaatgtgcctaatgctgcccagaatctcaagctccttctcgaaggtcctatcgcgcccttcacggttgagatcaatcctcttgacagcaaatgccgtgccatcatccatcaccatcttgtacacggtaccaaaaccgccacaaccgaccacatcctcttcatcaagcagctccaaccttctgatgatctcacctgatgagtacggaaggttccactggtatgtcacgagcttcgcacctaagtcagaacaccacagatagcaattagtttccattaagtgagggcctggacaggccggaacgagtgatagcagctgtgtcgactttattaccatctgggatagtttgcttgtccattttaacatagcttccaccaatgctcttcttcctggacagaagacatatccagaggaagcctagtaccgcgatcaatgcaagagccatggttgacattgagccaatcacaattccattcaggaagtgcgatgttttgttgttgttgattggtgaaacgcctgtttgcgacagagagatgacaccatcaattagtcacacacacattgcaccaaatttggtgagaagagcttcaacactgagaagatggcttagaaatggaagacttgccagctgaggagaggggatcagaatgcggcaacacggcaggaaacccgagggttccacggcaagccttctggatgggcagtccacaaagctccaaattcccaacgaacctgcaaatgccattgaattgtcatgtgaagaaatgcaccatggcattgaatacaggttgtgctcaagaagtagcagaaatgcacaaatttgttcatgtttgctacagttatgctcccacatcataaagagcaatgacacatcaaagaaagtagaaaggaagatgggcccaaatctaaaagcttacgagctgcttttgaaggttccaaggacaccaacatttgggatttctccagaaaagaaattggtggacagattcctgcaatacaaataagcatatgttctttcagagatttgcaacagcatttactcgtctggttttagcaatgccgacaagatggcataaggaaatttatacagcaagaaacttacaggaaacgaaggtgagtaaggcttccaatggacgccggtattgtgcccctcaacaggttgctggacaagtccctgcagatggcacgcattagaccaagaataagcagtgaatcagatcagggtattttgctaagaacctacaagattgtgaggtgaatgagctcgccaatctctgaagggatgcctccttgtaggtagttggctctcaagtaactgcacacacacacagagtaaattaaacctccgcatttcagctctacaaagtcattagcagacagatggagatggaaccaaacaagtactagatcgtagcagcatacatacatcgctctgagctcggtgcagttcttgatctcagaagggattgggccatgcaagctgttctggtgcaatgctctgaacaaaaggggttagaaattaaagaaagaccaatgcggatagtgtaaatgaagatggtgttgaaatgtgaagtgttgcacaaaagtggtgaagaagaaaaaatgttacattctctgcagcttgtcgagcttcccaatgctaggtgaaatgatgcccccaagctgcatgtaagggagatttctggtagaaaaggaaaacatgaaagaagagattattcagggggcgaggaatccaatgagcacatgggtagccgagccatgaaacattttgcttgagacttgagagagagatgcaaaagggaaaagaaaaatgaaagataaggctaattaatctgggtgcaaaatggagaaatgcaaggaaggaaagatagagataaattggagacggacatggattggaccctgaggtcggggaaggagcaggagatgccctcccagccgcaggggttagggtcggtgggcttccaggtcgtcagccgctggctgctgccattgaaggagagcttgagctccagcaatgcctgccctgcaaggagcagaaaaaacacaactaccccggtgagacagccagattggaggaagcattctctcatccatccatccatccatccatccatggatgcgtagtgcagcgcagagagagagagggtaccgtccggggtgagggccatggaggtggagcagagcagtgaggcagccatggcggtgacgagggcggcgcacaggcccaccacctgccccggagtcccatggcggccgccgctcgtcggctccatcttcttcatcttgttacttgtgctgtccatggtggccttggcttggtctctctctctagagtgtagtgggagtgagagtgag
More
|
||||||||||
| CDS seq | atggacagcacaagtaacaagatgaagaagatggagccgacgagcggcggccgccatgggactccggggcaggtggtgggcctgtgcgccgccctcgtcaccgccatggctgcctcactgctctgctccacctccatggccctcaccccggacgggcaggcattgctggagctcaagctctccttcaatggcagcagccagcggctgacgacctggaagcccaccgaccctaacccctgcggctgggagggcatctcctgctccttccccgacctcagggtccaatccataaatctcccttacatgcagcttgggggcatcatttcacctagcattgggaagctcgacaagctgcagagaatagcattgcaccagaacagcttgcatggcccaatcccttctgagatcaagaactgcaccgagctcagagcgatttacttgagagccaactacctacaaggaggcatcccttcagagattggcgagctcattcacctcacaatcttggacttgtccagcaacctgttgaggggcacaataccggcgtccattggaagccttactcaccttcgtttcctgaatctgtccaccaatttcttttctggagaaatcccaaatgttggtgtccttggaaccttcaaaagcagctcgttcgttgggaatttggagctttgtggactgcccatccagaaggcttgccgtggaaccctcgggtttcctgccgtgttgccgcattctgatcccctctcctcagctggcgtttcaccaatcaacaacaacaaaacatcgcacttcctgaatggaattgtgattggctcaatgtcaaccatggctcttgcattgatcgcggtactaggcttcctctggatatgtcttctgtccaggaagaagagcattggtggaagctatgttaaaatggacaagcaaactatcccagatggtgcgaagctcgtgacataccagtggaaccttccgtactcatcaggtgagatcatcagaaggttggagctgcttgatgaagaggatgtggtcggttgtggcggttttggtaccgtgtacaagatggtgatggatgatggcacggcatttgctgtcaagaggattgatctcaaccgtgaagggcgcgataggaccttcgagaaggagcttgagattctgggcagcattaggcacattaaccttgtcaatctgcgaggatactgccgtcttcctacagccaaactactcatatatgatttcttggagctgggcagtttggattgctaccttcatggagatgctcaggatgatcaaccattgaactggaatgcacgtatgaagattgccctgggctctgctcgagggctggcgtatttgcaccacgattgctcacccgtgattgtgcacagggacatcaaagccagtaacatccttctggacagaagcttggaaccccgcgtatcagattttggccttgcaaggctgcttgtagataatgatgcccacgttaccactgttgtcgcgggtacttttggatacctagcaccagaatacctgcaaaatggccatgctactgaaaaatctgatgtgtatagctttggagtgcttttgctcgagttggtgaccggaaagaggcctacagatgcatgcttcctcaagaagggactgaacattgttggctggctcaacaccctgacgggggagcatcggctggaggagatcattgatgagaactgcggcgatgtggaagtggaagcagtcgaggcgatcctcgacattgctgcgatgtgcaccgatgcagacccaggccagcgtccatcgatgagcgctgtcctgaagatgctggaggaggagatcctgtctccctgcatgagtgagctctactacgagcagcacctggaactctga
More
|
||||||||||
| Protein seq | MDSTSNKMKKMEPTSGGRHGTPGQVVGLCAALVTAMAASLLCSTSMALTPDGQALLELKLSFNGSSQRLTTWKPTDPNPCGWEGISCSFPDLRVQSINLPYMQLGGIISPSIGKLDKLQRIALHQNSLHGPIPSEIKNCTELRAIYLRANYLQGGIPSEIGELIHLTILDLSSNLLRGTIPASIGSLTHLRFLNLSTNFFSGEIPNVGVLGTFKSSSFVGNLELCGLPIQKACRGTLGFPAVLPHSDPLSSAGVSPINNNKTSHFLNGIVIGSMSTMALALIAVLGFLWICLLSRKKSIGGSYVKMDKQTIPDGAKLVTYQWNLPYSSGEIIRRLELLDEEDVVGCGGFGTVYKMVMDDGTAFAVKRIDLNREGRDRTFEKELEILGSIRHINLVNLRGYCRLPTAKLLIYDFLELGSLDCYLHGDAQDDQPLNWNARMKIALGSARGLAYLHHDCSPVIVHRDIKASNILLDRSLEPRVSDFGLARLLVDNDAHVTTVVAGTFGYLAPEYLQNGHATEKSDVYSFGVLLLELVTGKRPTDACFLKKGLNIVGWLNTLTGEHRLEEIIDENCGDVEVEAVEAILDIAAMCTDADPGQRPSMSAVLKMLEEEILSPCMSELYYEQHLEL |
||||||||||
| Function | LRR receptor-like serine/threonine-protein kinase FEI 1 [UniProtKB/Swiss-Prot:C0LGF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0021990 | OsLiXu_12g0021990.01 | Chr12 | 26527720 | 26531606 | - | NAM | ||
| CDS seq | atggacagcacaagtaacaagatgaagaagatggagccgacgagcggcggccgccatgggactccggggcaggtggtgggcctgtgcgccgccctcgtcaccgccatggctgcctcactgctctgctccacctccatggccctcaccccggacgggcaggcattgctggagctcaagctctccttcaatggcagcagccagcggctgacgacctggaagcccaccgaccctaacccctgcggctgggagggcatctcctgctccttccccgacctcagggtccaatccataaatctcccttacatgcagcttgggggcatcatttcacctagcattgggaagctcgacaagctgcagagaatagcattgcaccagaacagcttgcatggcccaatcccttctgagatcaagaactgcaccgagctcagagcgatttacttgagagccaactacctacaaggaggcatcccttcagagattggcgagctcattcacctcacaatcttggacttgtccagcaacctgttgaggggcacaataccggcgtccattggaagccttactcaccttcgtttcctgaatctgtccaccaatttcttttctggagaaatcccaaatgttggtgtccttggaaccttcaaaagcagctcgttcgttgggaatttggagctttgtggactgcccatccagaaggcttgccgtggaaccctcgggtttcctgccgtgttgccgcattctgatcccctctcctcagctggcgtttcaccaatcaacaacaacaaaacatcgcacttcctgaatggaattgtgattggctcaatgtcaaccatggctcttgcattgatcgcggtactaggcttcctctggatatgtcttctgtccaggaagaagagcattggtggaagctatgttaaaatggacaagcaaactatcccagatggtgcgaagctcgtgacataccagtggaaccttccgtactcatcaggtgagatcatcagaaggttggagctgcttgatgaagaggatgtggtcggttgtggcggttttggtaccgtgtacaagatggtgatggatgatggcacggcatttgctgtcaagaggattgatctcaaccgtgaagggcgcgataggaccttcgagaaggagcttgagattctgggcagcattaggcacattaaccttgtcaatctgcgaggatactgccgtcttcctacagccaaactactcatatatgatttcttggagctgggcagtttggattgctaccttcatggagatgctcaggatgatcaaccattgaactggaatgcacgtatgaagattgccctgggctctgctcgagggctggcgtatttgcaccacgattgctcacccgtgattgtgcacagggacatcaaagccagtaacatccttctggacagaagcttggaaccccgcgtatcagattttggccttgcaaggctgcttgtagataatgatgcccacgttaccactgttgtcgcgggtacttttggatacctagcaccagaatacctgcaaaatggccatgctactgaaaaatctgatgtgtatagctttggagtgcttttgctcgagttggtgaccggaaagaggcctacagatgcatgcttcctcaagaagggactgaacattgttggctggctcaacaccctgacgggggagcatcggctggaggagatcattgatgagaactgcggcgatgtggaagtggaagcagtcgaggcgatcctcgacattgctgcgatgtgcaccgatgcagacccaggccagcgtccatcgatgagcgctgtcctgaagatgctggaggaggagatcctgtctccctgcatgagtgagctctactacgagcagcacctggaactctga
More
|
|||||||
| Protein seq | MDSTSNKMKKMEPTSGGRHGTPGQVVGLCAALVTAMAASLLCSTSMALTPDGQALLELKLSFNGSSQRLTTWKPTDPNPCGWEGISCSFPDLRVQSINLPYMQLGGIISPSIGKLDKLQRIALHQNSLHGPIPSEIKNCTELRAIYLRANYLQGGIPSEIGELIHLTILDLSSNLLRGTIPASIGSLTHLRFLNLSTNFFSGEIPNVGVLGTFKSSSFVGNLELCGLPIQKACRGTLGFPAVLPHSDPLSSAGVSPINNNKTSHFLNGIVIGSMSTMALALIAVLGFLWICLLSRKKSIGGSYVKMDKQTIPDGAKLVTYQWNLPYSSGEIIRRLELLDEEDVVGCGGFGTVYKMVMDDGTAFAVKRIDLNREGRDRTFEKELEILGSIRHINLVNLRGYCRLPTAKLLIYDFLELGSLDCYLHGDAQDDQPLNWNARMKIALGSARGLAYLHHDCSPVIVHRDIKASNILLDRSLEPRVSDFGLARLLVDNDAHVTTVVAGTFGYLAPEYLQNGHATEKSDVYSFGVLLLELVTGKRPTDACFLKKGLNIVGWLNTLTGEHRLEEIIDENCGDVEVEAVEAILDIAAMCTDADPGQRPSMSAVLKMLEEEILSPCMSELYYEQHLEL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.313667 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0638100 | RBH | 0.0 | 0.000000 | 1.090984 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g44090 | RBH | 0.0 | 0.000000 | 0.275794 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0638100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0022230 | RBH | 0.0 | 3.862473 | 1.774118 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0022310 | RBH | 0.0 | 3.777688 | 0.287683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022670 | RBH | 0.0 | 1.704822 | 2.384135 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021650 | RBH | 1.892599 | 1.572451 | 0.884907 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0368500 | RBH | 4.26095 | 1.2300105 | 6.636201 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0401000 | RBH | 7.30737 | 0.0998225 | 25.9764165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021770 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0022020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021870 | RBH | 0.000000 | 5.472236 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0022180 | RBH | 0.0 | 0.0 | 0.013397 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021670 | RBH | 0.0 | 2.780389 | 1.944661 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021380 | RBH | 0.427381 | 1.777446 | 0.0 |
