Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0003920 | OGI:09005370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:2824346-2825821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acagggaaatagtgaatatatttaacatcaagtttcagccatcatacagatcagttctagccagtaatgccacgagttaaacaagacaaaagaaaagggccacaaagctagggttatcaacttgtccaaaagttagaaagcaacactactagcagattagcatgtcacagcatgcatcatcatagtatctatgttaatatttagcaattgtctaaacacatatatagtgcggcaattgcatgaccaaaagggtgcagcaaaatatagaccctcatcaaccacgattagcttttgcaaccaatatgcacctatagctcactagaggcctgtatcatcaccagataagaacttgtaaacccaacgttcaagatattcttgacccatgctaataagaaaactgcgatgagcttgaaattctggcttgcaaaggtgtagtccaactctcatcttatcttcaggttctaaggcaatcttcttgagcatgtcccatagaggggcatttggatcttgaggggctgcagtctgtattggtttggcaaggttatctttgattccaaccaaggtactagtgatcagcacatcaatatcatcatcatcatgcaatccagatgatgactttgccttaagcttacccttatcattatgtgattgagctaaggtctttggcttcccacactttttgaaactcttcttgtttggcttcagaccactggtatgagaagatgaaacttgactagttgctgcattaagggctgcagttgctgcattaagggctgccacctccttgcaatcatcactgtctgcctctaatttgtccgagtcttccccttgtggatattttgtttcagcataggttgacatatcattgaaattatcaagttcatcagcttcatcatcaaaatcagcaacacttgaaggatcttccataaacgctccatcagccgaggaaccactaaacaactcttgcagcttatcgaagaactgaataggctttgaaagaattccacggtcattaatctgccaagaaaaagtcatcaataatagaaaatctatttaacaaatatatcatgtattcaaaacaacaagagattaccgataggctatccaaggtagattgggagagagacaacattttgtttgtctcatcccagccaccaccactctcatttagatggcgagctacaagtgcccaagtctctttatggcgcctatagtgtcgttgaacctgatcaacattgtaagtactgccatactttgcattaatagctgatgtgcaagcagtgtgatgcatcttcttgatcactccctttggtggcagctctaacttcttttcaatgtaccagtcaagaagaaattcagagaatgctggtggccaatttatgggttttgacctcacacctgatcccccaactcctttgcgtgccttactttttcccttgccatgtttgttgcttcctcctatatccatgttatgaa
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| CDS seq | atggatataggaggaagcaacaaacatggcaagggaaaaagtaaggcacgcaaaggagttgggggatcaggtgtgaggtcaaaacccataaattggccaccagcattctctgaatttcttcttgactggtacattgaaaagaagttagagctgccaccaaagggagtgatcaagaagatgcatcacactgcttgcacatcagctattaatgcaaagtatggcagtacttacaatgttgatcaggttcaacgacactataggcgccataaagagacttgggcacttgtagctcgccatctaaatgagagtggtggtggctgggatgagacaaacaaaatgttgtctctctcccaatctaccttggatagcctatcgattaatgaccgtggaattctttcaaagcctattcagttcttcgataagctgcaagagttgtttagtggttcctcggctgatggagcgtttatggaagatccttcaagtgttgctgattttgatgatgaagctgatgaacttgataatttcaatgatatgtcaacctatgctgaaacaaaatatccacaaggggaagactcggacaaattagaggcagacagtgatgattgcaaggaggtggcagcccttaatgcagcaactgcagcccttaatgcagcaactagtcaagtttcatcttctcataccagtggtctgaagccaaacaagaagagtttcaaaaagtgtgggaagccaaagaccttagctcaatcacataatgataagggtaagcttaaggcaaagtcatcatctggattgcatgatgatgatgatattgatgtgctgatcactagtaccttggttggaatcaaagataaccttgccaaaccaatacagactgcagcccctcaagatccaaatgcccctctatgggacatgctcaagaagattgccttagaacctgaagataagatgagagttggactacacctttgcaagccagaatttcaagctcatcgcagttttcttattagcatgggtcaagaatatcttgaacgttgggtttacaagttcttatctggtgatgatacaggcctctag
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| Protein seq | MDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDWYIEKKLELPPKGVIKKMHHTACTSAINAKYGSTYNVDQVQRHYRRHKETWALVARHLNESGGGWDETNKMLSLSQSTLDSLSINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDNFNDMSTYAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKTLAQSHNDKGKLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTGL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0003920 | OsLima_12g0003920.01 | Chr12 | 2824346 | 2825821 | - | NAM | ||
| CDS seq | atggatataggaggaagcaacaaacatggcaagggaaaaagtaaggcacgcaaaggagttgggggatcaggtgtgaggtcaaaacccataaattggccaccagcattctctgaatttcttcttgactggtacattgaaaagaagttagagctgccaccaaagggagtgatcaagaagatgcatcacactgcttgcacatcagctattaatgcaaagtatggcagtacttacaatgttgatcaggttcaacgacactataggcgccataaagagacttgggcacttgtagctcgccatctaaatgagagtggtggtggctgggatgagacaaacaaaatgttgtctctctcccaatctaccttggatagcctatcgattaatgaccgtggaattctttcaaagcctattcagttcttcgataagctgcaagagttgtttagtggttcctcggctgatggagcgtttatggaagatccttcaagtgttgctgattttgatgatgaagctgatgaacttgataatttcaatgatatgtcaacctatgctgaaacaaaatatccacaaggggaagactcggacaaattagaggcagacagtgatgattgcaaggaggtggcagcccttaatgcagcaactgcagcccttaatgcagcaactagtcaagtttcatcttctcataccagtggtctgaagccaaacaagaagagtttcaaaaagtgtgggaagccaaagaccttagctcaatcacataatgataagggtaagcttaaggcaaagtcatcatctggattgcatgatgatgatgatattgatgtgctgatcactagtaccttggttggaatcaaagataaccttgccaaaccaatacagactgcagcccctcaagatccaaatgcccctctatgggacatgctcaagaagattgccttagaacctgaagataagatgagagttggactacacctttgcaagccagaatttcaagctcatcgcagttttcttattagcatgggtcaagaatatcttgaacgttgggtttacaagttcttatctggtgatgatacaggcctctag
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| Protein seq | MDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDWYIEKKLELPPKGVIKKMHHTACTSAINAKYGSTYNVDQVQRHYRRHKETWALVARHLNESGGGWDETNKMLSLSQSTLDSLSINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPSSVADFDDEADELDNFNDMSTYAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAATSQVSSSHTSGLKPNKKSFKKCGKPKTLAQSHNDKGKLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.059174 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0248900 | RBH | 0.0 | 0.0 | 0.193475 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03250 | RBH | 0.0 | 0.0 | 0.089358 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0248900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012630 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0002080 | SBH | 0.0 | 5.312442 | 1.908455 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002150 | SBH | 0.0 | 61.357327 | 6.828699 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012430 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0022600 | RBH | 0 | 0 | 0.0068885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0023800 | RBH | 0 | 0 | 0.0028585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006840 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010360 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017370 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G007160 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007400 | SBH | 0.0 | 0.0 | 0.0 |
