Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023250 | OGI:11076840 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28945079-28949583 | ||||||||
| Gene Symbol | LR21, Lr21, OsLr21 | ||||||||||
| DNA seq | ttagccactcaaatacaaaacgggaatgctgctgctgctgctgctaccatggggagaatgagtagattccaaagcaattgttactctaggaatatgctggatcttgtgccagTttggatgcccaattgttttgcaagacctcatgaactcgtcatcgcaggcccccaatccaaactcctcaagagatcggggcagctttggaagcgactgaatgttcaagcaaaaatacatcttcagttcatggagtgacatgagttgctccagattatctggcaagaagttccagctgcttttccaaagccagagtgaacggagatgaatgaaaaactcaaagagttcaggggcaggtcccagtcggctgcatccactgagctcaagttcgcgcaggtactttgggcctttgtgacctccgatcatccaatctgggtagcttgaaccgtgataatctgttatttctagtctttcaagctccaatggtgggcaaaggccctcaagcacctctgcctcaacctctggactgcagctctcatcatcccagacaagtaccagttctttcaggcgttccttgccatctaatttggcttcaagagcttcctccttgctcccaacgttttcaagaccgtggatatgtagcttgccacgaagcttgtttaggtgtctcagctgctgtaattcataccctggttccttctttactgggaacaatggtaatgtttgcagtgacgttagcatgccgatgtttggacaattcagatcagccgtggcgattatatgctgcaagttgatgagattactcatgtcttcgccagagggaaacactaaatctccacatacaccaaaatctagcacatgcatatagcgaagcttggcaattgtgtttggtaaaacttgtctgatcaaggttgtccgaaaacaaagatggcgtagatgcctcagttgaccaatagattctgggaatgagaacacatgcgatcctgtgatgattttaacgctcagtacccgcaacttcctcagcctcatgaacattctttcaaatatcttttcttcagttggtatttctgtattgccactataaataatcagagtgcgtaaatttcccattttcaaaaccttttcagtaatcatcgttttattataactctcgatataaaggtggcgaacatctccaggaagatctcctgtccagccattctcaactttgaagcaatcatttctagcaaccttctctgctaaatcgtgaagcagatcatgaaccgtgaagtattcggaggcaccaaacctttCTGcttgtttttctcctagttgcagaaatgaggctgataccaattcctcaaagtactttctaccaacagcctccatttctaatcctacttcagtagtcgttataaacccttctgccacccacaagttaattaactcatggcgttccagccgatgtcttctggggaaaatactgcagtaagcaaagcaccgtcttacctgctgatcaaggtgctggtagctccaccatagagctcccattgtctcattcaagaggttctgatttcgagcatcttgccaaaagtcaattgttggtctcatgtgtagttgccctccaactgttctggctgccagaggtgatctcttcagcttttttgcaatgtcagatcctatagctctgaatatcatccgatcgcgttcatctatgcctgcactgtcgagagcatagtgcatgaaaagttcaaggaacacagtgtcatccaattcagatatcggaatacattttgcagcacccaaagctaataatgcatctctagttcgactagttagtaggatcttacttcctaaagccccaaccttaagtggaaaaagaatcttttgtagctcctcctgactgtcatccttgttgtaccatacatcatctagtaccaaaaggaaccgttttcgactcaatgcctgttccagcttctgctctagggtgttaagactattgaactgagggcaagagttccctgtagcctcttcaagcatcttactgaaaatcttatccacattaaaattcctagaaacatgaacccacatgataaggtcgaaatggccagcctctttctcttgcctgccccttttctcatgggcacaaacatactgtgcaagggtagatttcccggacccaggaatgccatggatgccaatgatggaatgggataacgcacgactgggttcatgttgaccatcattttctgtctcatgaagcaatactaagatcttatcacgatcttcatctcggccaattactacaaatggaggagatgcagtagtgactgcaatacgtgaatcgtcagaaacagtttgtctcttgttgatattactgtggcctggcaaattcagaagctgcaaaattttgtgtccatcgttgataaTattttctatcttctttaggattttcttcaactccaattttgacatatcaggaggaggagcatctgaaggctgtaaaacaaaattagcaggtcaggtttttatggtattttacaggaactcatcaatcattcatcaccacccccctcacataaaaggactgacataacttgcgtaaatttatataaaaagataaggattcgttgaagaaaatagaacttccgcagttccctccaagaacgactgctaaaatgcattgtgcattaggtctttggtaccctatctccttcaagttgagtctccagtgatggattgttacagatagcttgaatttgtacatatttttttcctaggaagttggtatctccggtggcggtggttgcaggaaacaagaacacagtgaggcgacgtgcactagtggcaagctactctgcagcagccacagatattgatacaagcatgcatagatgtactgaagaggaatattgttttgctgcaccaattgtatgttttagtttgacagaaaggaaacctgcactggaaaagaatatcctgttttgtatatttaatgttatgattcagttcaacaaaattcttttttctttctgattaccctgtgtgaaagaaaaaaaaaagactcattccagtgaatactacaaagggaatctataagttcagttatactaagaatgttgtgtgttctaggagtcaccctttggagttatagcacataggttcagagttcttataggcgcagtacaattatggatgaaTttgtcatatcaacaaaatactgtagcccttgcaaggaaatctttatcgaacagaatatgaaaagatttctGgtgttgagtaaattacaaagagattttttactgtccttgagactgtgccgtactaaatcgtgaccgttgatctgacatcatccaacagtaaaaaaacgtcggagtggtaccgtgggtGgggggtagttttgtactttcgcgttgtatcggcatctcttccttctctgttcgcgggagaaaacgaatcgctgggcaggagcagcaagagaaacgacgatggtccagttcaggccgtcaggagcagcaagagaaacgacgatggctggtctgcgccagagacgcaggaagaacggagtccacagcagcagcggggtggaagcgacgccggagtcttcgaggtggatgcgacgacgggatgcgctggtcttgatgcgacgcgcggccgcggcggcctcgatgcgacgggatgccccggtcttgatgcgacgtcagctgcggcggcctcgatgtgacatcagccgcggcggactagctgcgatgcgacggcggccgcggcggattcgatgcggcacggagatgctattggctgagaggctgagatgggtggtgattagcgccgccctaaatttgtttagtccgatcgtaccctttctaaatcaacggttagattagatcggtacctcatggtacctcgtaccttataatacctcATGatacctcctcaagaatgagaaaaatgctcaattacagaagggtttcctttccagggtgtaaaagattacaaagctttagtattatgatacaaccaacagttagataagaaatagaagagcaataatagcaggcaaaacatattggcatattacgacacaacaaagttcaccttcagacttcagagggtctcaagcaggacagtaatacctggttttttatgcggacgctcttcggtagggcagactggagcatcttcaccaaattcctcctacgaggaggcctgccgTttgactccaaattgtcatcaggctgagatgagatctgcctttcaagacggtgatactcaatatcatccaagatgtcttcagcttcatagacagccgacctaagctgctgcaaccattcctccaaacggcccctgtgaggactctcctcaactgcttccagcactagttccagctgtagaactttagtctgaagttgtttcagcttctctgatccatgaaagccgaggtaggagaagcctttgttgaggatcttggtgatgatcggtgagacgacccaacctacagcagatatgccccagccaactgcggccacctccgccat
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| CDS seq | atggcggaggtggccgcagttggctggggcatatctgctgtaggttgggtcgtctcaccgatcatcaccaagatcctcaacaaaggcttctcctacctcggctttcatggatcagagaagctgaaacaacttcagactaaagttctacagctggaactagtgctggaagcagttgaggagagtcctcacaggggccgtttggaggaatggttgcagcagcttaggtcggctgtctatgaagctgaagacatcttggatgatattgagtatcaccgtcttgaaaggcagatctcatctcagcctgatgacaatttggagtcaaAcggcaggcctcctcgtaggaggaatttggtgaagatgctccagtctgccctaccgaagagcgtccgcataaaaaaccagccttcagatgctcctcctcctgatatgtcaaaattggagttgaagaaaatcctaaagaagatagaaaatAttatcaacgatggacacaaaattttgcagcttctgaatttgccaggccacagtaatatcaacaagagacaaactgtttctgacgattcacgtattgcagtcactactgcatctcctccatttgtagtaattggccgagatgaagatcgtgataagatcttagtattgcttcatgagacagaaaatgatggtcaacatgaacccagtcgtgcgttatcccattccatcattggcatccatggcattcctgggtccgggaaatctacccttgcacagtatgtttgtgcccatgagaaaaggggcaggcaagagaaagaggctggccatttcgaccttatcatgtgggttcatgtttctaggaattttaatgtggataagattttcagtaagatgcttgaagaggctacagggaactcttgccctcagttcaatagtcttaacaccctagagcagaagctggaacaggcattgagtcgaaaacggttccttttggtactagatgatgtatggtacaacaaggatgacagtcaggaggagctacaaaagattctttttccacttaaggttggggctttaggaagtaagatcctactaactagtcgaactagagatgcattattagctttgggtgctgcaaaatgtattccgatatctgaattggatgacactgtgttccttgaacttttcatgcactatgctctcgacagtgcaggcatagatgaacgcgatcggatgatattcagagctataggatctgacattgcaaaaaagctgaagagatcacctctggcagccagaacagttggagggcaactacacatgagaccaacaattgacttttggcaagatgctcgaaatcagaacctcttgaatgagacaatgggagctctatggtggagctaccagcaccttgatcagcaggtaagacggtgctttgcttactgcagtattttccccagaagacatcggctggaacgccatgagttaattaacttgtgggtggcagaagggtttataacgactactgaagtaggattagaaatggaggctgttggtagaaagtactttgaggaattggtatcagcctcatttctgcaactaggagaaaaacaagCAGaaaggtttggtgcctccgaatacttcacggttcatgatctgcttcacgatttagcagagaaggttgctagaaatgattgcttcaaagttgagaatggctggacaggagatcttcctggagatgttcgccacctttatatcgagagttataataaaacgatgattactgaaaaggttttgaaaatgggaaatttacgcactctgattatttatagtggcaatacagaaataccaactgaagaaaagatatttgaaagaatgttcatgaggctgaggaagttgcgggtactgagcgttaaaatcatcacaggatcgcatgtgttctcattcccagaatctattggtcaactgaggcatctacgccatctttgttttcggacaaccttgatcagacaagttttaccaaacacaattgccaagcttcgctatatgcatgtgctagattttggtgtatgtggagatttagtgtttccctctggcgaagacatgagtaatctcatcaacttgcagcatataatcgccacggctgatctgaattgtccaaacatcggcatgctaacgtcactgcaaacattaccattgttcccagtaaagaaggaaccagggtatgaattacagcagctgagacacctaaacaagcttcgtggcaagctacatatccacggtcttgaaaacgttgggagcaaggaggaagctcttgaagccaaattagatggcaaggaacgcctgaaagaactggtacttgtctgggatgatgagagctgcagtccagaggttgaggcagaggtgcttgagggcctttgcccaccattggagcttgaaagactagaaataacagattatcacggttcaagctacccagattggatgatcggaggtcacaaaggcccaaagtacctgcgcgaacttgagctcagtggatgcagccgactgggacctgcccctgaactctttgagtttttcattcatctccgttcactctggctttggaaaagcagctggaacttcttgccagataatctggagcaactcatgtcactccatgaactgaagatgtatttttgcttgaacattcagtcgcttccaaagctgccccgatctcttgaggagtttggattgggggcctgcgatgacgagttcatgaggtcttgcaaaacaattgggcatccaaActggcacaagatccagcatattcctagagtaacaattgctttggaatctactcattctccccatggtagcagcagcagcagcagcattcccgttttgtatttgagtggctaa
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| Protein seq | MAEVAAVGWGISAVGWVVSPIITKILNKGFSYLGFHGSEKLKQLQTKVLQLELVLEAVEESPHRGRLEEWLQQLRSAVYEAEDILDDIEYHRLERQISSQPDDNLESNGRPPRRRNLVKMLQSALPKSVRIKNQPSDAPPPDMSKLELKKILKKIENIINDGHKILQLLNLPGHSNINKRQTVSDDSRIAVTTASPPFVVIGRDEDRDKILVLLHETENDGQHEPSRALSHSIIGIHGIPGSGKSTLAQYVCAHEKRGRQEKEAGHFDLIMWVHVSRNFNVDKIFSKMLEEATGNSCPQFNSLNTLEQKLEQALSRKRFLLVLDDVWYNKDDSQEELQKILFPLKVGALGSKILLTSRTRDALLALGAAKCIPISELDDTVFLELFMHYALDSAGIDERDRMIFRAIGSDIAKKLKRSPLAARTVGGQLHMRPTIDFWQDARNQNLLNETMGALWWSYQHLDQQVRRCFAYCSIFPRRHRLERHELINLWVAEGFITTTEVGLEMEAVGRKYFEELVSASFLQLGEKQAERFGASEYFTVHDLLHDLAEKVARNDCFKVENGWTGDLPGDVRHLYIESYNKTMITEKVLKMGNLRTLIIYSGNTEIPTEEKIFERMFMRLRKLRVLSVKIITGSHVFSFPESIGQLRHLRHLCFRTTLIRQVLPNTIAKLRYMHVLDFGVCGDLVFPSGEDMSNLINLQHIIATADLNCPNIGMLTSLQTLPLFPVKKEPGYELQQLRHLNKLRGKLHIHGLENVGSKEEALEAKLDGKERLKELVLVWDDESCSPEVEAEVLEGLCPPLELERLEITDYHGSSYPDWMIGGHKGPKYLRELELSGCSRLGPAPELFEFFIHLRSLWLWKSSWNFLPDNLEQLMSLHELKMYFCLNIQSLPKLPRSLEEFGLGACDDEFMRSCKTIGHPNWHKIQHIPRVTIALESTHSPHGSSSSSSIPVLYLSG |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023250 | OsLima_11g0023250.01 | Chr11 | 28945079 | 28949583 | - | NAM | ||
| CDS seq | atggcggaggtggccgcagttggctggggcatatctgctgtaggttgggtcgtctcaccgatcatcaccaagatcctcaacaaaggcttctcctacctcggctttcatggatcagagaagctgaaacaacttcagactaaagttctacagctggaactagtgctggaagcagttgaggagagtcctcacaggggccgtttggaggaatggttgcagcagcttaggtcggctgtctatgaagctgaagacatcttggatgatattgagtatcaccgtcttgaaaggcagatctcatctcagcctgatgacaatttggagtcaaAcggcaggcctcctcgtaggaggaatttggtgaagatgctccagtctgccctaccgaagagcgtccgcataaaaaaccagccttcagatgctcctcctcctgatatgtcaaaattggagttgaagaaaatcctaaagaagatagaaaatAttatcaacgatggacacaaaattttgcagcttctgaatttgccaggccacagtaatatcaacaagagacaaactgtttctgacgattcacgtattgcagtcactactgcatctcctccatttgtagtaattggccgagatgaagatcgtgataagatcttagtattgcttcatgagacagaaaatgatggtcaacatgaacccagtcgtgcgttatcccattccatcattggcatccatggcattcctgggtccgggaaatctacccttgcacagtatgtttgtgcccatgagaaaaggggcaggcaagagaaagaggctggccatttcgaccttatcatgtgggttcatgtttctaggaattttaatgtggataagattttcagtaagatgcttgaagaggctacagggaactcttgccctcagttcaatagtcttaacaccctagagcagaagctggaacaggcattgagtcgaaaacggttccttttggtactagatgatgtatggtacaacaaggatgacagtcaggaggagctacaaaagattctttttccacttaaggttggggctttaggaagtaagatcctactaactagtcgaactagagatgcattattagctttgggtgctgcaaaatgtattccgatatctgaattggatgacactgtgttccttgaacttttcatgcactatgctctcgacagtgcaggcatagatgaacgcgatcggatgatattcagagctataggatctgacattgcaaaaaagctgaagagatcacctctggcagccagaacagttggagggcaactacacatgagaccaacaattgacttttggcaagatgctcgaaatcagaacctcttgaatgagacaatgggagctctatggtggagctaccagcaccttgatcagcaggtaagacggtgctttgcttactgcagtattttccccagaagacatcggctggaacgccatgagttaattaacttgtgggtggcagaagggtttataacgactactgaagtaggattagaaatggaggctgttggtagaaagtactttgaggaattggtatcagcctcatttctgcaactaggagaaaaacaagCAGaaaggtttggtgcctccgaatacttcacggttcatgatctgcttcacgatttagcagagaaggttgctagaaatgattgcttcaaagttgagaatggctggacaggagatcttcctggagatgttcgccacctttatatcgagagttataataaaacgatgattactgaaaaggttttgaaaatgggaaatttacgcactctgattatttatagtggcaatacagaaataccaactgaagaaaagatatttgaaagaatgttcatgaggctgaggaagttgcgggtactgagcgttaaaatcatcacaggatcgcatgtgttctcattcccagaatctattggtcaactgaggcatctacgccatctttgttttcggacaaccttgatcagacaagttttaccaaacacaattgccaagcttcgctatatgcatgtgctagattttggtgtatgtggagatttagtgtttccctctggcgaagacatgagtaatctcatcaacttgcagcatataatcgccacggctgatctgaattgtccaaacatcggcatgctaacgtcactgcaaacattaccattgttcccagtaaagaaggaaccagggtatgaattacagcagctgagacacctaaacaagcttcgtggcaagctacatatccacggtcttgaaaacgttgggagcaaggaggaagctcttgaagccaaattagatggcaaggaacgcctgaaagaactggtacttgtctgggatgatgagagctgcagtccagaggttgaggcagaggtgcttgagggcctttgcccaccattggagcttgaaagactagaaataacagattatcacggttcaagctacccagattggatgatcggaggtcacaaaggcccaaagtacctgcgcgaacttgagctcagtggatgcagccgactgggacctgcccctgaactctttgagtttttcattcatctccgttcactctggctttggaaaagcagctggaacttcttgccagataatctggagcaactcatgtcactccatgaactgaagatgtatttttgcttgaacattcagtcgcttccaaagctgccccgatctcttgaggagtttggattgggggcctgcgatgacgagttcatgaggtcttgcaaaacaattgggcatccaaActggcacaagatccagcatattcctagagtaacaattgctttggaatctactcattctccccatggtagcagcagcagcagcagcattcccgttttgtatttgagtggctaa
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| Protein seq | MAEVAAVGWGISAVGWVVSPIITKILNKGFSYLGFHGSEKLKQLQTKVLQLELVLEAVEESPHRGRLEEWLQQLRSAVYEAEDILDDIEYHRLERQISSQPDDNLESNGRPPRRRNLVKMLQSALPKSVRIKNQPSDAPPPDMSKLELKKILKKIENIINDGHKILQLLNLPGHSNINKRQTVSDDSRIAVTTASPPFVVIGRDEDRDKILVLLHETENDGQHEPSRALSHSIIGIHGIPGSGKSTLAQYVCAHEKRGRQEKEAGHFDLIMWVHVSRNFNVDKIFSKMLEEATGNSCPQFNSLNTLEQKLEQALSRKRFLLVLDDVWYNKDDSQEELQKILFPLKVGALGSKILLTSRTRDALLALGAAKCIPISELDDTVFLELFMHYALDSAGIDERDRMIFRAIGSDIAKKLKRSPLAARTVGGQLHMRPTIDFWQDARNQNLLNETMGALWWSYQHLDQQVRRCFAYCSIFPRRHRLERHELINLWVAEGFITTTEVGLEMEAVGRKYFEELVSASFLQLGEKQAERFGASEYFTVHDLLHDLAEKVARNDCFKVENGWTGDLPGDVRHLYIESYNKTMITEKVLKMGNLRTLIIYSGNTEIPTEEKIFERMFMRLRKLRVLSVKIITGSHVFSFPESIGQLRHLRHLCFRTTLIRQVLPNTIAKLRYMHVLDFGVCGDLVFPSGEDMSNLINLQHIIATADLNCPNIGMLTSLQTLPLFPVKKEPGYELQQLRHLNKLRGKLHIHGLENVGSKEEALEAKLDGKERLKELVLVWDDESCSPEVEAEVLEGLCPPLELERLEITDYHGSSYPDWMIGGHKGPKYLRELELSGCSRLGPAPELFEFFIHLRSLWLWKSSWNFLPDNLEQLMSLHELKMYFCLNIQSLPKLPRSLEEFGLGACDDEFMRSCKTIGHPNWHKIQHIPRVTIALESTHSPHGSSSSSSIPVLYLSG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.086567 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0668100 | RBH | 0.545508 | 1.187026 | 0.660127 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44580 | RBH | 0.270107 | 0.700377 | 0.157062 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0668100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023060 | RBH | 0.721716 | 4.629389 | 1.179042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023140 | RBH | 0.000000 | 0.000000 | 1.017373 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022770 | RBH | 0.979597 | 4.284066 | 2.042390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022460 | RBH | 0.124196 | 0.081978 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022720 | RBH | 2.844949 | 2.401514 | 2.983024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0405000 | RBH | 2.546412 | 9.46714 | 0.3946455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023620 | RBH | 0.393959 | 0.167419 | 0.935478 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0433700 | SBH | 0.084204 | 0.011601 | 0.315849 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023160 | SBH | 0.267412 | 0.215590 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022960 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022690 | RBH | 0.796213 | 0.0 | 0.076279 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022580 | RBH | 0.015212 | 0.477175 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022940 | RBH | 0.684989 | 0.867905 | 0.231093 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023370 | RBH | 1.251961 | 12.032497 | 1.134784 |
