Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023160 | OGI:11076320 | 8/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28831683-28835910 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acccacgtttttgttctctcttgttctttggattgcctttccccgcttcagatggagatgatgtttcgatccagaaattcctaattgtcgtcaggaggggatggagatctcgatttcttccacggttgctgatgaggcgatggctttaactgcttcgcgcagcgagatgagtccgctcctccggcaactccattcattgacggataccatcaacaatctgtctggaggtgaaggtgttagtgaggatgagatccaggatttcaagactgttctcaagggattacgcaccaacatcaaggatctgtcagcggtggagagaactagtttaacggctaagcgctggatgcaggaggtgcgggagctttgttatgacacggaggacttcttggacagagttatgaactctggcgccggtgtagacaaaagtgctcttattgagcattttaatcggatccagggtaagcagaagaagcggaatcgccagattgctgcagatttctcaggactaaaagctcgtgcgaagggtgcgggggaaagattcatcagatgcgtccttccggcacaaaccatcaaacccaactgcgaagaagccagttccagccaacaacatccgttgcctgctcaactctcctctgtCctcggcgtccatggccgtattgccgatcgaattgatggcctcatggatcatcttgtcaagttgctagctttcaacgcccaacagcaacaattcaaagtggtggctatccttggTtttgcaggtgttggcaagacaacattagctagaagcctatatcataactatggagcgcgattcgaatgccgcgcattcctacaggtgtctcgaaatccagatcttagaggatttctcatcagcatgctctcacaaattaaggcaccacggacccatgccacttctgatgtgcaggacctctttgacaatgtcaagaaacatctacaaggcaaaaggtacgatttactgttcaatactgaattgagatatgacaaatgttactgtatttgattagctaccataatctgatagtatggtacacatgtatcagcataccaacatttggatatgataaaggtgttctgctagctaccaccaaaataaaaccggcattatcaacccaacatccagcccaaactgtcaaacagtttccctcttaaaagctaagagtgagaataaattagccaatatttctggatttacttcgtgttagccttatcaggtacaaataCcccaaaagttatgcctaaaaagaggaattcaatggaaatccacaaataggcccatcaggtcatccttaataatattctaaaaaacctagtaaaatttcacaagaaaccgttttgtccaagagaagtactctttttaatccatttctttttttttttgagtggaaattttttaatccatctctaatattgcatctttgacatcattttagagaACacatcagttagtacttatagtagattgtttccaaattctggtggttgtcccaaagctaattttgtaaaaaaAaTaaaaagatttatgaagaaagcataatgtgcgatacactaGtgtgtgagctatatgctcatcccccttggtaatacagtatatttcacagcaccacatatatcttgacaaaaattatcacaaaactatacatttaagattaaatttatcatagaattacagatttaaggtattatatctacacagattgtatatattcttcgtctatttcttacagttccacatctacacagggcagtgattgcaatttcggaacgaaatttcgccctccaccagcaagcatatatcttgcctgaaattttctcctttttctccatttttttgtgaatttggtcaaagtttattcaaattcattcaaaattcgtcatattttcaaataattttggccaaaaaataccggattttttgaaattttggtgatttcatgggcccccagcaaaaacaggcatttcaagaatgcaaaccctgacacagggtcagtagtgtgatcgttgatttacttttactgtgtttctttgtctattattatgtcagcttcgtgtatttgcacgcaagtgcattcttgcaggtacttgattgtaatcgatggtctatgggtctccacgacctgggatattattagccgtgctttaccgagggacaattgttacagcagAataataacaaccacacaaactgaggacgtagccaaggcatgttgtagttataattccactgatatatttgagatgagacctcttaataataaccttcaattcagtggtttaccattcgaaactacaataatggtagccaatttgttgaaatgcaatcctatgacagtggcacagtggatgcacctacaaaattccataccctcaagtctaggtaccaattctactgctgaagggatgaatgaacttctaagccttatctacaatattcttccacatgatttgaaaacatgcttgctacattttaacatgtatcctgaggactacacgatcaggaaggatgatttggtgaagcaatgggtagctgaagggtttgtccatgaagtaaatgggcaagacgcggacgttgttgctaaaatatattttgatgaacttatcattagaggattgatccaaccagtagatatcaattataacaatgaggtgctgtcatgtacagttcatcacattgtgttggattttattaggtacaaatccaaggaggagaatttcattactattatggactatttccaagcaagacctggaaatctggacaaagttcgtcgattgtccatgcagtttggaagtgtgaaaggtgcaaagatatcggcgggaagcatcagaatgagccaaattcggtcacttgtatatttcggattcttcaaatgtgtaccttccgttacagagtatgctctactgcgagttctgattcttcatgtttgggcagataaagacaagatatgttttgacctctctagcattcaggaactatttcgactgagatatctgaaggttgcatgtaatgtaggtgtcaagtttccatccaagattggacgattacaatacttggagacgctggatttagatgcaagagtggttggttttccattagatatcgttcaattgcagaatttattgcatgtccgccttccacgtgagactaatatgcccaatgggattgacaagatgacatcacttcgcagtttagcgtatcttcagctctctgatagctcaagagacaatgtgttgagacttggcaagctgaccaatttacaggatctccatctaacctgttctggaatagtacaaactgaccgtgtggttgttaacttgaaaagtcttgggtctatcatggaaaaactcagaaaactgaaatctctaattctagatggtggtgcttcaaccacgagcatcccctgtgatgatttgagcatattgtcctatccgccacccaatcttcagaagcttgagttgtcgccacaattctttatctttcccagcctccctgagTGGAttggaaaacttagcaaactgtgcaatctAaagattgcagtcagggacttaccaaggaataacattgacattattaaaagattgactactcttACtgttctctcgctctctgtgcggaccacccctgcagaccggattgtttttgacaaaggattccagggaatcaggtacttcaagttcacgtctactgcaccatgtttgtcctttgcggaaggagcgatggttaattttgtaaggcttaagttagttttcaatgccagtagcatagaggaatatgaccttacatctatttgcttccagtatttaacttcccttaaagatatctctgtaaaatttggagacaccagttcttatttgccaagcggaaggaatgcagcagagagtgcactggtcgctgcagttagcaagcatccaagcagccctatagtcaatgtaaaatggacagtagggatttcttctgatgtcatattaaagagtatatcagcacgaaaaggagaacttcaggccccagaaacaccgggtatcatagctaggaaagacgaacttgaagttcaagaaaaggaagaaaggagtacagcagcacaaaaaggaaaacaccacactccaaatcatgatgtgatcaaagggaaaggcgcagatgaacatgagcttcaagaaaatatttcaagggaaggtataggcaaacaagataatagcaggtaaggattccttt
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| CDS seq | atggagatctcgatttcttccacggttgctgatgaggcgatggctttaactgcttcgcgcagcgagatgagtccgctcctccggcaactccattcattgacggataccatcaacaatctgtctggaggtgaaggtgttagtgaggatgagatccaggatttcaagactgttctcaagggattacgcaccaacatcaaggatctgtcagcggtggagagaactagtttaacggctaagcgctggatgcaggaggtgcgggagctttgttatgacacggaggacttcttggacagagttatgaactctggcgccggtgtagacaaaagtgctcttattgagcattttaatcggatccagggtaagcagaagaagcggaatcgccagattgctgcagatttctcaggactaaaagctcgtgcgaagggtgcgggggaaagattcatcagatgcgtccttccggcacaaaccatcaaacccaactgcgaagaagccagttccagccaacaacatccgttgcctgctcaactctcctctgtCctcggcgtccatggccgtattgccgatcgaattgatggcctcatggatcatcttgtcaagttgctagctttcaacgcccaacagcaacaattcaaagtggtggctatccttggTtttgcaggtgttggcaagacaacattagctagaagcctatatcataactatggagcgcgattcgaatgccgcgcattcctacaggtgtctcgaaatccagatcttagaggatttctcatcagcatgctctcacaaattaaggcaccacggacccatgccacttctgatgtgcaggacctctttgacaatgtcaagaaacatctacaaggcaaaaggtacttgattgtaatcgatggtctatgggtctccacgacctgggatattattagccgtgctttaccgagggacaattgttacagcagAataataacaaccacacaaactgaggacgtagccaaggcatgttgtagttataattccactgatatatttgagatgagacctcttaataataaccttcaattcagtggtttaccattcgaaactacaataatggtagccaatttgttgaaatgcaatcctatgacagtggcacagtggatgcacctacaaaattccataccctcaagtctaggtaccaattctactgctgaagggatgaatgaacttctaagccttatctacaatattcttccacatgatttgaaaacatgcttgctacattttaacatgtatcctgaggactacacgatcaggaaggatgatttggtgaagcaatgggtagctgaagggtttgtccatgaagtaaatgggcaagacgcggacgttgttgctaaaatatattttgatgaacttatcattagaggattgatccaaccagtagatatcaattataacaatgaggtgctgtcatgtacagttcatcacattgtgttggattttattaggtacaaatccaaggaggagaatttcattactattatggactatttccaagcaagacctggaaatctggacaaagttcgtcgattgtccatgcagtttggaagtgtgaaaggtgcaaagatatcggcgggaagcatcagaatgagccaaattcggtcacttgtatatttcggattcttcaaatgtgtaccttccgttacagagtatgctctactgcgagttctgattcttcatgtttgggcagataaagacaagatatgttttgacctctctagcattcaggaactatttcgactgagatatctgaaggttgcatgtaatgtaggtgtcaagtttccatccaagattggacgattacaatacttggagacgctggatttagatgcaagagtggttggttttccattagatatcgttcaattgcagaatttattgcatgtccgccttccacgtgagactaatatgcccaatgggattgacaagatgacatcacttcgcagtttagcgtatcttcagctctctgatagctcaagagacaatgtgttgagacttggcaagctgaccaatttacaggatctccatctaacctgttctggaatagtacaaactgaccgtgtggttgttaacttgaaaagtcttgggtctatcatggaaaaactcagaaaactgaaatctctaattctagatggtggtgcttcaaccacgagcatcccctgtgatgatttgagcatattgtcctatccgccacccaatcttcagaagcttgagttgtcgccacaattctttatctttcccagcctccctgagTGGAttggaaaacttagcaaactgtgcaatctAaagattgcagtcagggacttaccaaggaataacattgacattattaaaagattgactactcttACtgttctctcgctctctgtgcggaccacccctgcagaccggattgtttttgacaaaggattccagggaatcaggtacttcaagttcacgtctactgcaccatgtttgtcctttgcggaaggagcgatggttaattttgtaaggcttaagttagttttcaatgccagtagcatagaggaatatgaccttacatctatttgcttccagtatttaacttcccttaaagatatctctgtaaaatttggagacaccagttcttatttgccaagcggaaggaatgcagcagagagtgcactggtcgctgcagttagcaagcatccaagcagccctatagtcaatgtaaaatggacagtagggatttcttctgatgtcatattaaagagtatatcagcacgaaaaggagaacttcaggccccagaaacaccgggtatcatagctaggaaagacgaacttgaagttcaagaaaaggaagaaaggagtacagcagcacaaaaaggaaaacaccacactccaaatcatgatgtgatcaaagggaaaggcgcagatgaacatgagcttcaagaaaatatttcaagggaaggtataggcaaacaagataatagcaggtaa
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| Protein seq | MEISISSTVADEAMALTASRSEMSPLLRQLHSLTDTINNLSGGEGVSEDEIQDFKTVLKGLRTNIKDLSAVERTSLTAKRWMQEVRELCYDTEDFLDRVMNSGAGVDKSALIEHFNRIQGKQKKRNRQIAADFSGLKARAKGAGERFIRCVLPAQTIKPNCEEASSSQQHPLPAQLSSVLGVHGRIADRIDGLMDHLVKLLAFNAQQQQFKVVAILGFAGVGKTTLARSLYHNYGARFECRAFLQVSRNPDLRGFLISMLSQIKAPRTHATSDVQDLFDNVKKHLQGKRYLIVIDGLWVSTTWDIISRALPRDNCYSRIITTTQTEDVAKACCSYNSTDIFEMRPLNNNLQFSGLPFETTIMVANLLKCNPMTVAQWMHLQNSIPSSLGTNSTAEGMNELLSLIYNILPHDLKTCLLHFNMYPEDYTIRKDDLVKQWVAEGFVHEVNGQDADVVAKIYFDELIIRGLIQPVDINYNNEVLSCTVHHIVLDFIRYKSKEENFITIMDYFQARPGNLDKVRRLSMQFGSVKGAKISAGSIRMSQIRSLVYFGFFKCVPSVTEYALLRVLILHVWADKDKICFDLSSIQELFRLRYLKVACNVGVKFPSKIGRLQYLETLDLDARVVGFPLDIVQLQNLLHVRLPRETNMPNGIDKMTSLRSLAYLQLSDSSRDNVLRLGKLTNLQDLHLTCSGIVQTDRVVVNLKSLGSIMEKLRKLKSLILDGGASTTSIPCDDLSILSYPPPNLQKLELSPQFFIFPSLPEWIGKLSKLCNLKIAVRDLPRNNIDIIKRLTTLTVLSLSVRTTPADRIVFDKGFQGIRYFKFTSTAPCLSFAEGAMVNFVRLKLVFNASSIEEYDLTSICFQYLTSLKDISVKFGDTSSYLPSGRNAAESALVAAVSKHPSSPIVNVKWTVGISSDVILKSISARKGELQAPETPGIIARKDELEVQEKEERSTAAQKGKHHTPNHDVIKGKGADEHELQENISREGIGKQDNSR |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023160 | OsLima_11g0023160.01 | Chr11 | 28831683 | 28835910 | + | NAM | ||
| CDS seq | atggagatctcgatttcttccacggttgctgatgaggcgatggctttaactgcttcgcgcagcgagatgagtccgctcctccggcaactccattcattgacggataccatcaacaatctgtctggaggtgaaggtgttagtgaggatgagatccaggatttcaagactgttctcaagggattacgcaccaacatcaaggatctgtcagcggtggagagaactagtttaacggctaagcgctggatgcaggaggtgcgggagctttgttatgacacggaggacttcttggacagagttatgaactctggcgccggtgtagacaaaagtgctcttattgagcattttaatcggatccagggtaagcagaagaagcggaatcgccagattgctgcagatttctcaggactaaaagctcgtgcgaagggtgcgggggaaagattcatcagatgcgtccttccggcacaaaccatcaaacccaactgcgaagaagccagttccagccaacaacatccgttgcctgctcaactctcctctgtCctcggcgtccatggccgtattgccgatcgaattgatggcctcatggatcatcttgtcaagttgctagctttcaacgcccaacagcaacaattcaaagtggtggctatccttggTtttgcaggtgttggcaagacaacattagctagaagcctatatcataactatggagcgcgattcgaatgccgcgcattcctacaggtgtctcgaaatccagatcttagaggatttctcatcagcatgctctcacaaattaaggcaccacggacccatgccacttctgatgtgcaggacctctttgacaatgtcaagaaacatctacaaggcaaaaggtacttgattgtaatcgatggtctatgggtctccacgacctgggatattattagccgtgctttaccgagggacaattgttacagcagAataataacaaccacacaaactgaggacgtagccaaggcatgttgtagttataattccactgatatatttgagatgagacctcttaataataaccttcaattcagtggtttaccattcgaaactacaataatggtagccaatttgttgaaatgcaatcctatgacagtggcacagtggatgcacctacaaaattccataccctcaagtctaggtaccaattctactgctgaagggatgaatgaacttctaagccttatctacaatattcttccacatgatttgaaaacatgcttgctacattttaacatgtatcctgaggactacacgatcaggaaggatgatttggtgaagcaatgggtagctgaagggtttgtccatgaagtaaatgggcaagacgcggacgttgttgctaaaatatattttgatgaacttatcattagaggattgatccaaccagtagatatcaattataacaatgaggtgctgtcatgtacagttcatcacattgtgttggattttattaggtacaaatccaaggaggagaatttcattactattatggactatttccaagcaagacctggaaatctggacaaagttcgtcgattgtccatgcagtttggaagtgtgaaaggtgcaaagatatcggcgggaagcatcagaatgagccaaattcggtcacttgtatatttcggattcttcaaatgtgtaccttccgttacagagtatgctctactgcgagttctgattcttcatgtttgggcagataaagacaagatatgttttgacctctctagcattcaggaactatttcgactgagatatctgaaggttgcatgtaatgtaggtgtcaagtttccatccaagattggacgattacaatacttggagacgctggatttagatgcaagagtggttggttttccattagatatcgttcaattgcagaatttattgcatgtccgccttccacgtgagactaatatgcccaatgggattgacaagatgacatcacttcgcagtttagcgtatcttcagctctctgatagctcaagagacaatgtgttgagacttggcaagctgaccaatttacaggatctccatctaacctgttctggaatagtacaaactgaccgtgtggttgttaacttgaaaagtcttgggtctatcatggaaaaactcagaaaactgaaatctctaattctagatggtggtgcttcaaccacgagcatcccctgtgatgatttgagcatattgtcctatccgccacccaatcttcagaagcttgagttgtcgccacaattctttatctttcccagcctccctgagTGGAttggaaaacttagcaaactgtgcaatctAaagattgcagtcagggacttaccaaggaataacattgacattattaaaagattgactactcttACtgttctctcgctctctgtgcggaccacccctgcagaccggattgtttttgacaaaggattccagggaatcaggtacttcaagttcacgtctactgcaccatgtttgtcctttgcggaaggagcgatggttaattttgtaaggcttaagttagttttcaatgccagtagcatagaggaatatgaccttacatctatttgcttccagtatttaacttcccttaaagatatctctgtaaaatttggagacaccagttcttatttgccaagcggaaggaatgcagcagagagtgcactggtcgctgcagttagcaagcatccaagcagccctatagtcaatgtaaaatggacagtagggatttcttctgatgtcatattaaagagtatatcagcacgaaaaggagaacttcaggccccagaaacaccgggtatcatagctaggaaagacgaacttgaagttcaagaaaaggaagaaaggagtacagcagcacaaaaaggaaaacaccacactccaaatcatgatgtgatcaaagggaaaggcgcagatgaacatgagcttcaagaaaatatttcaagggaaggtataggcaaacaagataatagcaggtaa
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| Protein seq | MEISISSTVADEAMALTASRSEMSPLLRQLHSLTDTINNLSGGEGVSEDEIQDFKTVLKGLRTNIKDLSAVERTSLTAKRWMQEVRELCYDTEDFLDRVMNSGAGVDKSALIEHFNRIQGKQKKRNRQIAADFSGLKARAKGAGERFIRCVLPAQTIKPNCEEASSSQQHPLPAQLSSVLGVHGRIADRIDGLMDHLVKLLAFNAQQQQFKVVAILGFAGVGKTTLARSLYHNYGARFECRAFLQVSRNPDLRGFLISMLSQIKAPRTHATSDVQDLFDNVKKHLQGKRYLIVIDGLWVSTTWDIISRALPRDNCYSRIITTTQTEDVAKACCSYNSTDIFEMRPLNNNLQFSGLPFETTIMVANLLKCNPMTVAQWMHLQNSIPSSLGTNSTAEGMNELLSLIYNILPHDLKTCLLHFNMYPEDYTIRKDDLVKQWVAEGFVHEVNGQDADVVAKIYFDELIIRGLIQPVDINYNNEVLSCTVHHIVLDFIRYKSKEENFITIMDYFQARPGNLDKVRRLSMQFGSVKGAKISAGSIRMSQIRSLVYFGFFKCVPSVTEYALLRVLILHVWADKDKICFDLSSIQELFRLRYLKVACNVGVKFPSKIGRLQYLETLDLDARVVGFPLDIVQLQNLLHVRLPRETNMPNGIDKMTSLRSLAYLQLSDSSRDNVLRLGKLTNLQDLHLTCSGIVQTDRVVVNLKSLGSIMEKLRKLKSLILDGGASTTSIPCDDLSILSYPPPNLQKLELSPQFFIFPSLPEWIGKLSKLCNLKIAVRDLPRNNIDIIKRLTTLTVLSLSVRTTPADRIVFDKGFQGIRYFKFTSTAPCLSFAEGAMVNFVRLKLVFNASSIEEYDLTSICFQYLTSLKDISVKFGDTSSYLPSGRNAAESALVAAVSKHPSSPIVNVKWTVGISSDVILKSISARKGELQAPETPGIIARKDELEVQEKEERSTAAQKGKHHTPNHDVIKGKGADEHELQENISREGIGKQDNSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.267412 | 0.215590 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0225300 | SBH | 2.019053 | 1.250956 | 4.432347 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38000 | SBH | 0.951243 | 1.040434 | 0.710578 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0225300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024250 | SBH | 0.858141 | 0.000000 | 1.780773 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023050 | SBH | 0.350881 | 2.159900 | 2.415120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023910 | SBH | 0.0 | 2.986157 | 1.145721 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023710 | SBH | 0.023583 | 0.155662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007770 | SBH | 22.293795 | 17.082457 | 21.002594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0401100 | SBH | 0 | 0 | 0.00518 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024450 | SBH | 0.156799 | 0.040792 | 0.934761 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0421400 | SBH | 1.5230995 | 6.917459 | 5.3415235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023150 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024000 | SBH | 1.287633 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007830 | SBH | 15.697803 | 27.759771 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022610 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024100 | SBH | 0.0 | 0.502415 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022860 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023290 | RBH | 0.0 | 0.0 | 0.0 |
