Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_11g0020050 OGI:11067860 | 15/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr11:25425894-25429746
Gene Symbol -
DNA seq

gaacatgcagcctgcaacaacatgactatactcgcataattatgtttgaacgaaaacatggacacagaaatagaacttacagatacaagtggccaacagcaactacacacagaaattacagatacaaactttttagataatgtacagatacaaactggccaacggcaatacagaagcgaccatgagatgcaagagttttatgccatttgccagcaaaagtacagaagcttcttcttgtctgctcctaaatcctaatcgaagctgaagcagtgcaggccgtcctcctttattaactctgtccccttaggagtcaggagaggaggacatcatcccctgctcgcaaaagccaacaagtaaggaatttatcagctaaaatgggagttactaattgctagtagaaacgaacagtaatttaccatttccttgggaccttggttgcttagagttaagtatggctctctgttccaccttcagcttcaatCTCGctttgaacctgtattgctgtcctcagtgcggcctcatcagccgcttgagcaccatcctccgctgcatcgacttcggatcctgttgcactctcttccttcttgtcacttgaccgaataacatcttttctgatgccattgatgaaaaggtcaatagtgttgctatgcttggcaacctctttgctaactgcgtctgtcgtcatcttaatgttggggctgttgatgtaccgtacgttgtagcatattgttacctctgtaagctctttaaggttgttgatacctgaaggaacactcatatcgcttGCtgggaacgcgtgcaaagtcagtcgaagatatgtgagcttccgcatagcctctttttcgaaagtcagccatgggacagggcagtcaagggagaatctctcaagctctttgaacccttctttctcaatcactattgctttttcgggaatgaactccaagcctagtactaggtgctgcaattcgatcaagcccgcgaggatcttgagatcatctgctacttgtttgcagaccgtgatctgcaagaaagtaagatgcttgagCcctctgatccatcggggaacactagcgaattttccatctattaccttaaTTtttttaagtccgttaggtggttctattagagaacccaggaactccatggaacatccgagtccacaatgaatggtcagggacttaagcttccaccattttactatggatgatcgtagagcttgttggtagtctttatcactgcactggtgaaaggaccatgttattgcgaggacctccaatctgtccagatcaccgagagactgtattgacTttgtagagaattcacttaaatcgatagttgctagcgtctttagatatcttaattggtggatcgtctccggtatctttgttagcactgttcggttggagtcaatcattccagatccaactccagtaccaccaacgataagatgttccaggctctttagctgcacaatttgatctggcaactgccttatcagtgtgcctcttaggtctagcgtctccagattaggtagccggcatactccagaggggagatcacttgtcttggtgtggcttatatccaatctctctagccagatcagttccttgactttctctggaagatgtcttatccatgtgcctctgaggtccagaatctgcaaacgttttagctcacacacttctgatgggatctcacttatgttggtgcggcttatgtccaatgtcctcaggatgcgcagctccttgatctgaggtgcgagcttgctgacctttgtgttcctgacgctcagatacctcagcataaacattgtgcatatctgcagtaagtcctcatccttcaaattctcccagccttcaagatccaaccacaccagatatccaaacttgtcaagagcgaccgttgttctgtcgactgcaccagatatgagtagtgaacgagtctgagacaaatccatttgctgcagcattgctggaagctgcggatcaggatggtggagagctagacggcgtgctatccgagtggtgttgccaccaccgctcggtgctgaggtgagcgttgagctggtaaaaacaagacccatctctgctgctctggaggcaagaaacctcagtatgaaaggattgacctgccactggcacaagtcatcttcatcaatattgagtccacagttctctgctgctgggatgatgattttcctgttgagcaaccaagagaaattccgctttccaaaatctggACTacgatcccactcatggatgaacccttcgtcttccaatatcgtgacaagatgatccttgttctcaaacacatatcccTGtggaaacatgcttaggtagagtgacgattgtctcagctcatcactgtaatcaaatgataaccagtgttcaaactgtttcagcagcaggcgtacttcttccaccctaggaattgcagagctgccgtattgctgttgatgttgtttcaaccaatctgccatactagttatgaacaatggtattcctctacacatgttcaagatttcatcacataatagcctaagattgtctggaaggcaaccatccatggaactaaaagcttttgtgcgaagcagcttctctgaatccgagtcattgagaggcttcgtcttatgcacaaccccattataattagacaaaaaccacccagaaacctgctcatcgcgagctgtaaacaatattctgctactgcagttattattaggaaatgcacccttgatcatttccaaatctgatccgtcgaATatatcatcaatcaaagcaaagtatctggagggagaatacgaagagagaaaatattaagagaattcgagctctgatgctgctccgtaagagaagtcctaaatgagtacagtactatatagcagctgaattaagcaagcagtacatgttgtttacctcttatccttgaggcattctgatatgttgcgagccaacagctctgggtcgtcctccaacatcgtgatttctgagctgttaggtgatgatggtgcctccagttgctccatgatctgcttgaggatggtttgaagaagaagctgcttgctcctgtgagctggcctgcgggataagttagccacaacgtggcactggaaatgagtttggcaccggagtcgacggtggagctccatggcaagagtggtcttgccaatgccagcgggtccagcaatggccatgacccggaggctcttgtcggcggccatgagccatccgagcagctcgtttgccgtgccgtcgatgccaacaagatgatcatggacggcagcagcctcgacttgggctgcttgatgcagtgatggcatGAgctccgagcttgggagcttgaggcgtggatcattggagaacacacggtagagatagtacgccagatacagaagtttgagagaccttgggtgccgatcacacagaagtttcatcatatctatggcatagttgaaagacattgggcggcggaagcaccgcatgggttttcgcagcagcgcgcgaggtgcttcttctcggtgccgtttacacagaaaattcaccatatctatggcgtccctcatctcttgcttcagcacctcaagccaatccttctgtctacggatgagatcgacaccacgacgatctctgggtggcggcagcggcatcctcagggacgcgacaatgctgctcacctccccctccacgaacgccaaatagtgcctttcgtgggcatctgtgatgcgtccagcctccagcagctcagagatcctcccagggaggggctcccactccttcaacaactcctcccgcttcttcatgatggaagttattagcgccgccgtctccggacttcccatcgctccctccgacat

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CDS seq

atgtcggagggagcgatgggaagtccggagacggcggcgctaataacttccatcatgaagaagcgggaggagttgttgaaggagtgggagcccctccctgggaggatctctgagctgctggaggctggacgcatcacagatgcccacgaaaggcactatttggcgttcgtggagggggaggtgagcagcattgtcgcgtccctgaggatgccgctgccgccacccagagatcgtcgtggtgtcgatctcatccgtagacagaaggattggcttgaggtgctgaagcaagagatgagggacgccatagatatggtgaattttctgtgtaaacggcaccgagaagaagcacctcgcgcgctgctgcgaaaacccatgcggtgcttccgccgcccaatgtctttcaactatgccatagatatgatgaaacttctgtgtgatcggcacccaaggtctctcaaacttctgtatctggcgtactatctctaccgtgtgttctccaatgatccacgcctcaagctcccaagctcggagcTCatgccatcactgcatcaagcagcccaagtcgaggctgctgccgtccatgatcatcttgttggcatcgacggcacggcaaacgagctgctcggatggctcatggccgccgacaagagcctccgggtcatggccattgctggacccgctggcattggcaagaccactcttgccatggagctccaccgtcgactccggtgccaaactcatttccagtgccacgttgtggctaacttatcccgcaggccagctcacaggagcaagcagcttcttcttcaaaccatcctcaagcagatcatggagcaactggaggcaccatcatcacctaacagctcagaaatcacgatgttggaggacgacccagagctgttggctcgcaacatatcagaatgcctcaaggataagagatactttgctttgattgatgatatATtcgacggatcagatttggaaatgatcaagggtgcatttcctaataataactgcagtagcagaatattgtttacagctcgcgatgagcaggtttctgggtggtttttgtctaattataatggggttgtgcataagacgaagcctctcaatgactcggattcagagaagctgcttcgcacaaaagcttttagttccatggatggttgccttccagacaatcttaggctattatgtgatgaaatcttgaacatgtgtagaggaataccattgttcataactagtatggcagattggttgaaacaacatcaacagcaatacggcagctctgcaattcctagggtggaagaagtacgcctgctgctgaaacagtttgaacactggttatcatttgattacagtgatgagctgagacaatcgtcactctacctaagcatgtttccaCAgggatatgtgtttgagaacaaggatcatcttgtcacgatattggaagacgaagggttcatccatgagtgggatcgtAGTccagattttggaaagcggaatttctcttggttgctcaacaggaaaatcatcatcccagcagcagagaactgtggactcaatattgatgaagatgacttgtgccagtggcaggtcaatcctttcatactgaggtttcttgcctccagagcagcagagatgggtcttgtttttaccagctcaacgctcacctcagcaccgagcggtggtggcaacaccactcggatagcacgccgtctagctctccaccatcctgatccgcagcttccagcaatgctgcagcaaatggatttgtctcagactcgttcactactcatatctggtgcagtcgacagaacaacggtcgctcttgacaagtttggatatctggtgtggttggatcttgaaggctgggagaatttgaaggatgaggacttactgcagatatgcacaatgtttatgctgaggtatctgagcgtcaggaacacaaaggtcagcaagctcgcacctcagatcaaggagctgcgcatcctgaggacattggacataagccgcaccaacataagtgagatcccatcagaagtgtgtgagctaaaacgtttgcagattctggacctcagaggcacatggataagacatcttccagagaaagtcaaggaactgatctggctagagagattggatataagccacaccaagacaagtgatctcccctctggagtatgccggctacctaatctggagacgctagacctaagaggcacactgataaggcagttgccagatcaaattgtgcagctaaagagcctggaacatcttatcgttggtggtactggagttggatctggaatgattgactccaaccgaacagtgctaacaaagataccggagacgatccaccaattaagatatctaaagacgctagcaactatcgatttaagtgaattctctacaaAgtcaatacagtctctcggtgatctggacagattggaggtcctcgcaataacatggtcctttcaccagtgcagtgataaagactaccaacaagctctacgatcatccatagtaaaatggtggaagcttaagtccctgaccattcattgtggactcggatgttccatggagttcctgggttctctaatagaaccacctaacggacttaaaaaAAttaaggtaatagatggaaaattcgctagtgttccccgatggatcagaggGctcaagcatcttactttcttgcagatcacggtctgcaaacaagtagcagatgatctcaagatcctcgcgggcttgatcgaattgcagcacctagtactaggcttggagttcattcccgaaaaagcaatagtgattgagaaagaagggttcaaagagcttgagagattctcccttgactgccctgtcccatggctgactttcgaaaaagaggctatgcggaagctcacatatcttcgactgactttgcacgcgttcccaGCaagcgatatgagtgttccttcaggtatcaacaaccttaaagagcttacagaggtaacaatatgctacaacgtacggtacatcaacagccccaacattaagatgacgacagacgcagttagcaaagaggttgccaagcatagcaacactattgaccttttcatcaatggcatcagaaaagatgttattcggtcaagtgacaagaaggaagagagtgcaacaggatccgaagtcgatgcagcggaggatggtgctcaagcggctgatgaggccgcactgaggacagcaatacaggttcaaagCGAGattgaagctgaaggtggaacagagagccatacttaa

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Protein seq

MSEGAMGSPETAALITSIMKKREELLKEWEPLPGRISELLEAGRITDAHERHYLAFVEGEVSSIVASLRMPLPPPRDRRGVDLIRRQKDWLEVLKQEMRDAIDMVNFLCKRHREEAPRALLRKPMRCFRRPMSFNYAIDMMKLLCDRHPRSLKLLYLAYYLYRVFSNDPRLKLPSSELMPSLHQAAQVEAAAVHDHLVGIDGTANELLGWLMAADKSLRVMAIAGPAGIGKTTLAMELHRRLRCQTHFQCHVVANLSRRPAHRSKQLLLQTILKQIMEQLEAPSSPNSSEITMLEDDPELLARNISECLKDKRYFALIDDIFDGSDLEMIKGAFPNNNCSSRILFTARDEQVSGWFLSNYNGVVHKTKPLNDSDSEKLLRTKAFSSMDGCLPDNLRLLCDEILNMCRGIPLFITSMADWLKQHQQQYGSSAIPRVEEVRLLLKQFEHWLSFDYSDELRQSSLYLSMFPQGYVFENKDHLVTILEDEGFIHEWDRSPDFGKRNFSWLLNRKIIIPAAENCGLNIDEDDLCQWQVNPFILRFLASRAAEMGLVFTSSTLTSAPSGGGNTTRIARRLALHHPDPQLPAMLQQMDLSQTRSLLISGAVDRTTVALDKFGYLVWLDLEGWENLKDEDLLQICTMFMLRYLSVRNTKVSKLAPQIKELRILRTLDISRTNISEIPSEVCELKRLQILDLRGTWIRHLPEKVKELIWLERLDISHTKTSDLPSGVCRLPNLETLDLRGTLIRQLPDQIVQLKSLEHLIVGGTGVGSGMIDSNRTVLTKIPETIHQLRYLKTLATIDLSEFSTKSIQSLGDLDRLEVLAITWSFHQCSDKDYQQALRSSIVKWWKLKSLTIHCGLGCSMEFLGSLIEPPNGLKKIKVIDGKFASVPRWIRGLKHLTFLQITVCKQVADDLKILAGLIELQHLVLGLEFIPEKAIVIEKEGFKELERFSLDCPVPWLTFEKEAMRKLTYLRLTLHAFPASDMSVPSGINNLKELTEVTICYNVRYINSPNIKMTTDAVSKEVAKHSNTIDLFINGIRKDVIRSSDKKEESATGSEVDAAEDGAQAADEAALRTAIQVQSEIEAEGGTESHT

Function Disease resistance protein Piks-1 [UniProtKB/Swiss-Prot:P0DO09]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_11g0020050 OsLima_11g0020050.01 Chr11 25425894 25429746 - NAM
CDS seq

atgtcggagggagcgatgggaagtccggagacggcggcgctaataacttccatcatgaagaagcgggaggagttgttgaaggagtgggagcccctccctgggaggatctctgagctgctggaggctggacgcatcacagatgcccacgaaaggcactatttggcgttcgtggagggggaggtgagcagcattgtcgcgtccctgaggatgccgctgccgccacccagagatcgtcgtggtgtcgatctcatccgtagacagaaggattggcttgaggtgctgaagcaagagatgagggacgccatagatatggtgaattttctgtgtaaacggcaccgagaagaagcacctcgcgcgctgctgcgaaaacccatgcggtgcttccgccgcccaatgtctttcaactatgccatagatatgatgaaacttctgtgtgatcggcacccaaggtctctcaaacttctgtatctggcgtactatctctaccgtgtgttctccaatgatccacgcctcaagctcccaagctcggagcTCatgccatcactgcatcaagcagcccaagtcgaggctgctgccgtccatgatcatcttgttggcatcgacggcacggcaaacgagctgctcggatggctcatggccgccgacaagagcctccgggtcatggccattgctggacccgctggcattggcaagaccactcttgccatggagctccaccgtcgactccggtgccaaactcatttccagtgccacgttgtggctaacttatcccgcaggccagctcacaggagcaagcagcttcttcttcaaaccatcctcaagcagatcatggagcaactggaggcaccatcatcacctaacagctcagaaatcacgatgttggaggacgacccagagctgttggctcgcaacatatcagaatgcctcaaggataagagatactttgctttgattgatgatatATtcgacggatcagatttggaaatgatcaagggtgcatttcctaataataactgcagtagcagaatattgtttacagctcgcgatgagcaggtttctgggtggtttttgtctaattataatggggttgtgcataagacgaagcctctcaatgactcggattcagagaagctgcttcgcacaaaagcttttagttccatggatggttgccttccagacaatcttaggctattatgtgatgaaatcttgaacatgtgtagaggaataccattgttcataactagtatggcagattggttgaaacaacatcaacagcaatacggcagctctgcaattcctagggtggaagaagtacgcctgctgctgaaacagtttgaacactggttatcatttgattacagtgatgagctgagacaatcgtcactctacctaagcatgtttccaCAgggatatgtgtttgagaacaaggatcatcttgtcacgatattggaagacgaagggttcatccatgagtgggatcgtAGTccagattttggaaagcggaatttctcttggttgctcaacaggaaaatcatcatcccagcagcagagaactgtggactcaatattgatgaagatgacttgtgccagtggcaggtcaatcctttcatactgaggtttcttgcctccagagcagcagagatgggtcttgtttttaccagctcaacgctcacctcagcaccgagcggtggtggcaacaccactcggatagcacgccgtctagctctccaccatcctgatccgcagcttccagcaatgctgcagcaaatggatttgtctcagactcgttcactactcatatctggtgcagtcgacagaacaacggtcgctcttgacaagtttggatatctggtgtggttggatcttgaaggctgggagaatttgaaggatgaggacttactgcagatatgcacaatgtttatgctgaggtatctgagcgtcaggaacacaaaggtcagcaagctcgcacctcagatcaaggagctgcgcatcctgaggacattggacataagccgcaccaacataagtgagatcccatcagaagtgtgtgagctaaaacgtttgcagattctggacctcagaggcacatggataagacatcttccagagaaagtcaaggaactgatctggctagagagattggatataagccacaccaagacaagtgatctcccctctggagtatgccggctacctaatctggagacgctagacctaagaggcacactgataaggcagttgccagatcaaattgtgcagctaaagagcctggaacatcttatcgttggtggtactggagttggatctggaatgattgactccaaccgaacagtgctaacaaagataccggagacgatccaccaattaagatatctaaagacgctagcaactatcgatttaagtgaattctctacaaAgtcaatacagtctctcggtgatctggacagattggaggtcctcgcaataacatggtcctttcaccagtgcagtgataaagactaccaacaagctctacgatcatccatagtaaaatggtggaagcttaagtccctgaccattcattgtggactcggatgttccatggagttcctgggttctctaatagaaccacctaacggacttaaaaaAAttaaggtaatagatggaaaattcgctagtgttccccgatggatcagaggGctcaagcatcttactttcttgcagatcacggtctgcaaacaagtagcagatgatctcaagatcctcgcgggcttgatcgaattgcagcacctagtactaggcttggagttcattcccgaaaaagcaatagtgattgagaaagaagggttcaaagagcttgagagattctcccttgactgccctgtcccatggctgactttcgaaaaagaggctatgcggaagctcacatatcttcgactgactttgcacgcgttcccaGCaagcgatatgagtgttccttcaggtatcaacaaccttaaagagcttacagaggtaacaatatgctacaacgtacggtacatcaacagccccaacattaagatgacgacagacgcagttagcaaagaggttgccaagcatagcaacactattgaccttttcatcaatggcatcagaaaagatgttattcggtcaagtgacaagaaggaagagagtgcaacaggatccgaagtcgatgcagcggaggatggtgctcaagcggctgatgaggccgcactgaggacagcaatacaggttcaaagCGAGattgaagctgaaggtggaacagagagccatacttaa

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Protein seq

MSEGAMGSPETAALITSIMKKREELLKEWEPLPGRISELLEAGRITDAHERHYLAFVEGEVSSIVASLRMPLPPPRDRRGVDLIRRQKDWLEVLKQEMRDAIDMVNFLCKRHREEAPRALLRKPMRCFRRPMSFNYAIDMMKLLCDRHPRSLKLLYLAYYLYRVFSNDPRLKLPSSELMPSLHQAAQVEAAAVHDHLVGIDGTANELLGWLMAADKSLRVMAIAGPAGIGKTTLAMELHRRLRCQTHFQCHVVANLSRRPAHRSKQLLLQTILKQIMEQLEAPSSPNSSEITMLEDDPELLARNISECLKDKRYFALIDDIFDGSDLEMIKGAFPNNNCSSRILFTARDEQVSGWFLSNYNGVVHKTKPLNDSDSEKLLRTKAFSSMDGCLPDNLRLLCDEILNMCRGIPLFITSMADWLKQHQQQYGSSAIPRVEEVRLLLKQFEHWLSFDYSDELRQSSLYLSMFPQGYVFENKDHLVTILEDEGFIHEWDRSPDFGKRNFSWLLNRKIIIPAAENCGLNIDEDDLCQWQVNPFILRFLASRAAEMGLVFTSSTLTSAPSGGGNTTRIARRLALHHPDPQLPAMLQQMDLSQTRSLLISGAVDRTTVALDKFGYLVWLDLEGWENLKDEDLLQICTMFMLRYLSVRNTKVSKLAPQIKELRILRTLDISRTNISEIPSEVCELKRLQILDLRGTWIRHLPEKVKELIWLERLDISHTKTSDLPSGVCRLPNLETLDLRGTLIRQLPDQIVQLKSLEHLIVGGTGVGSGMIDSNRTVLTKIPETIHQLRYLKTLATIDLSEFSTKSIQSLGDLDRLEVLAITWSFHQCSDKDYQQALRSSIVKWWKLKSLTIHCGLGCSMEFLGSLIEPPNGLKKIKVIDGKFASVPRWIRGLKHLTFLQITVCKQVADDLKILAGLIELQHLVLGLEFIPEKAIVIEKEGFKELERFSLDCPVPWLTFEKEAMRKLTYLRLTLHAFPASDMSVPSGINNLKELTEVTICYNVRYINSPNIKMTTDAVSKEVAKHSNTIDLFINGIRKDVIRSSDKKEESATGSEVDAAEDGAQAADEAALRTAIQVQSEIEAEGGTESHT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.030156 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0606400 RBH 2.511902 1.171710 0.169618
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g39310 RBH 1.635008 0.758533 0.042027
Nipponbare | IRGSP 1.0 | RAP-db Os11g0606400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0019790 RBH 1.457639 0.0 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0019960 RBH 0.035429 0.296581 0.087987
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0019740 SBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0019270 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0019810 RBH 0.0 7.217703 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0356600 RBH 0.0294455 0.7655105 0.041654
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0020290 SBH 0.000000 0.027919 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0372500 RBH 8.3602705 0.178841 0.087625
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0020070 RBH 0.0 0.041929 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0020300 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0019750 SBH 0.0 2.198174 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0019530 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0019640 RBH 0.0 2.092294 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G019610 RBH 0.0 0.0 0.103604
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0019980 SBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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