Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0019960 | OGI:11067860 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:24726899-24730736 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaacatgcagcctgcaacaacatgactatactcgcataattgtgtttgaacgaaaacatggacacagaaatagaacttacagatacaagtggccaacagcaactacacacagaaattacagatacaaactttttagataatgtacagatacaaactggccaacggcaatacagaagcgaccatgagatgcaagagttttatgccatttgccagcaaaagtacagaagcttcttcttgtctgctcctaaatcctaatcgaagttgaagcagtgcaggccgtcctcctttattaactctgtccccttaggagtcaggagaggaggacatcatcccctgctcgcaaaagccaacaagtaaggaatttatcagctaaaatgggagttactaattgctagtagaaacgaacagtaatttaccatttccttgggaccttggttgcttagagttaagtatggctctctgttccaccttcagcttcaatctcgctttgaacctgtattgctgtcctcagtgcggcctcatcagccgcttgagcaccatcctccgctgcatcgacttcggatcctgttgcactctcttccttcttgtcacttgaccgaataacatcttctctgatgccgttgatgaaaaggtcaatagtgttgctatgcttggcaacctctttgctaactgcgtctgtcgtcatcttaatgttggggctgttgatgtaccgtacgttgtagcatagtgttacctctgtaagctctttaaggttattgatacctgaaggaacactcatatcgcttgcagggaacgcgtgcaaagtcagtcgaagatatgtgagcttccgcatagcctctttttcgaaagtcagccatgggacagggcagtcaagggagaatctctcaagctctttgaacccttctttctcaatcactattgctttttcgggaatgaactccaagcctagtactaggtgctgcaattcgatcaagcccgcgaggatcttgagatcatctgctacttgtttgcagaccgtgatttgcaagaaagtaagatgcttgagccctctgatccatcggggaacactagcgaattttccatctattaccttaatttttttaagtccgttaggtggttctattagagaacccaggaactccatggaacatccgagtccacaatgaatggtcagggacttaagcttcctccatcttactatggatgatcgtagagcttgttggtagtctttatcactgcactggtgaaaggaccatgttattgcgaggacctccaatctgtccagatcaccgagagactgtattgactttgtagagaattcacttaaatcgatagttgctagcgtctttagatatcttaattggtggatcgtctccggtatctttgttagcactgttcggttggagtcaatcattccagatccaactccagtaccactaacgataagatgttccaggctctttagctgcacaatttgatctggcaactgccttatcagtgtgcctcttaggtctagcgtctccagattaggtagccggcatactccagaggggagatcacttgtcttggtgtggcttatatccaatctctctagccagatcagttccttgactttctctggaagatgtcttatccatgtgcctctgaggtccagaatctgcaaacgttttagctcacacacttctgatgggatctcacttatgttggtgcggcttatgtccaatgtcctcaggatgcgcagctccttgatctgaggtgcgagcttgctgacctttgtgttcctgacgctcagatacctcagcataaacattgtgcatatctgcagtaagtcctcatccttcaaattctcccagccttcaagatccaaccacaccagatatccaaacttgtcaagagcgaccgttgttctgtcgactgcaccagatatgagtagtgaacgagtctgagacaaatccatttgctgcagcattgctggaagctgcggatcaggatggtggagagctagacggcgtgctatccgagtggtgttgccaccaccgctcggtgctgaggtgagcgttgagctggtaaaaacaagacccatctctgctgctctggaggcaagaaacctcagtatgaaaggattgacctgccactggcacaagtcatcttcatcaatattgagtccacagttctctgctgctgggatgatgattttcctgttgagcaaccaagagaaattccgctttccaaaatctggactacgatcccactcatggatgaacccttcgtcttccaatatcgtgacaagatgatccttgttctcaaacacatatccctgtggaaacatgcttaggtagagtgacgattgtctcagctcatcactgtaatcaaatgataaccagtgttcaaactgtttcagcagcaggcgtacttcttccaccctaggaattgcagagctgccgtattgctgttgatgttgtttcaaccaatctgccatactagttatgaacaatggtattcctctacacatgttcaagatttcatcacataatagcctaagattgtctggaaggcaaccatccatggaactaaaagcttttgtgcgaagcagcttctctgaatccgagtcattgagaggcttcgtcttatgcacaaccccattataattagacaaaaaccacccagaaacctgctcatcgcgagctgtaaacaatattctgctactgcagttattattaggaaatgcacccttgatcatttccaaatctgatccgtcgaatatatcatcaatcaaagcaaagtatctggagggagaatacgaagagagaaaatattaagagaattcgagctctgatgctgctccgtaagagaagtcctaaatgagtacagtactatatagcagctgaattaagcaagcagtacatgttgtttacctcttatccttgaggcattctgatatgttgcgagccaacagctctgggtcgtcctccaacatcgtgatttctgagctgttaggtgatgatggtgcctccagttgctccatgatctgcttgaggatggtttgaagaagaagctgcttgctcctgtgagctggcctgcgggataagttagccacaacgtggcactggaaatgagtttggcaccggagtcgacggtggagctccatggcaagagtggtcttgccaatgccggcgggtccagcaatggccatgacccggaggctcttgtcggcggccatgagccatccgagcagctcgtttgccgtgccgtcgatgccaacaagatgatcatggacggcagcagcctcgacttgggctgcttgatgcagtgatggcatgagctccgagcttgggagcttgaggcgtggatcattggagaacacacggtagagatagtacgccagatacagaagtttgagagaccttgggtgccgatcacacagaagtttcatcatatctatggcatagttgaaagacattgggcggcggaagcaccgcatgggttttcgcagcagcgcgcgaggtgcttcttctcggtgccgtttacacagaaaattcaccatatctatggcgtccctcatctcgtgcttcagcatctcaagccaatccttctgtctacggatgagatcgaccccacgacgatctctgggtggcggcagcggcatcctcagggacgcgacaatgctgctcacctccccctccacgaacgccaaatagtgcctttcgtgggcatctgtgatgcgtccagcctccagcagctcagagatcctcccagggaggggctcccactccttcaacaactcctcccgcttcttcatgaaggaagttattagcgccgccgtctccggacttcccat
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| CDS seq | atgggaagtccggagacggcggcgctaataacttccttcatgaagaagcgggaggagttgttgaaggagtgggagcccctccctgggaggatctctgagctgctggaggctggacgcatcacagatgcccacgaaaggcactatttggcgttcgtggagggggaggtgagcagcattgtcgcgtccctgaggatgccgctgccgccacccagagatcgtcgtggggtcgatctcatccgtagacagaaggattggcttgagatgctgaagcacgagatgagggacgccatagatatggtgaattttctgtgtaaacggcaccgagaagaagcacctcgcgcgctgctgcgaaaacccatgcggtgcttccgccgcccaatgtctttcaactatgccatagatatgatgaaacttctgtgtgatcggcacccaaggtctctcaaacttctgtatctggcgtactatctctaccgtgtgttctccaatgatccacgcctcaagctcccaagctcggagctcatgccatcactgcatcaagcagcccaagtcgaggctgctgccgtccatgatcatcttgttggcatcgacggcacggcaaacgagctgctcggatggctcatggccgccgacaagagcctccgggtcatggccattgctggacccgccggcattggcaagaccactcttgccatggagctccaccgtcgactccggtgccaaactcatttccagtgccacgttgtggctaacttatcccgcaggccagctcacaggagcaagcagcttcttcttcaaaccatcctcaagcagatcatggagcaactggaggcaccatcatcacctaacagctcagaaatcacgatgttggaggacgacccagagctgttggctcgcaacatatcagaatgcctcaaggataagagatactttgctttgattgatgatatattcgacggatcagatttggaaatgatcaagggtgcatttcctaataataactgcagtagcagaatattgtttacagctcgcgatgagcaggtttctgggtggtttttgtctaattataatggggttgtgcataagacgaagcctctcaatgactcggattcagagaagctgcttcgcacaaaagcttttagttccatggatggttgccttccagacaatcttaggctattatgtgatgaaatcttgaacatgtgtagaggaataccattgttcataactagtatggcagattggttgaaacaacatcaacagcaatacggcagctctgcaattcctagggtggaagaagtacgcctgctgctgaaacagtttgaacactggttatcatttgattacagtgatgagctgagacaatcgtcactctacctaagcatgtttccacagggatatgtgtttgagaacaaggatcatcttgtcacgatattggaagacgaagggttcatccatgagtgggatcgtagtccagattttggaaagcggaatttctcttggttgctcaacaggaaaatcatcatcccagcagcagagaactgtggactcaatattgatgaagatgacttgtgccagtggcaggtcaatcctttcatactgaggtttcttgcctccagagcagcagagatgggtcttgtttttaccagctcaacgctcacctcagcaccgagcggtggtggcaacaccactcggatagcacgccgtctagctctccaccatcctgatccgcagcttccagcaatgctgcagcaaatggatttgtctcagactcgttcactactcatatctggtgcagtcgacagaacaacggtcgctcttgacaagtttggatatctggtgtggttggatcttgaaggctgggagaatttgaaggatgaggacttactgcagatatgcacaatgtttatgctgaggtatctgagcgtcaggaacacaaaggtcagcaagctcgcacctcagatcaaggagctgcgcatcctgaggacattggacataagccgcaccaacataagtgagatcccatcagaagtgtgtgagctaaaacgtttgcagattctggacctcagaggcacatggataagacatcttccagagaaagtcaaggaactgatctggctagagagattggatataagccacaccaagacaagtgatctcccctctggagtatgccggctacctaatctggagacgctagacctaagaggcacactgataaggcagttgccagatcaaattgtgcagctaaagagcctggaacatcttatcgttagtggtactggagttggatctggaatgattgactccaaccgaacagtgctaacaaagataccggagacgatccaccaattaagatatctaaagacgctagcaactatcgatttaagtgaattctctacaaagtcaatacagtctctcggtgatctggacagattggaggtcctcgcaataacatggtcctttcaccagtgcagtgataaagactaccaacaagctctacgatcatccatagtaagatggaggaagcttaagtccctgaccattcattgtggactcggatgttccatggagttcctgggttctctaatagaaccacctaacggacttaaaaaaattaaggtaatagatggaaaattcgctagtgttccccgatggatcagagggctcaagcatcttactttcttgcaaatcacggtctgcaaacaagtagcagatgatctcaagatcctcgcgggcttgatcgaattgcagcacctagtactaggcttggagttcattcccgaaaaagcaatagtgattgagaaagaagggttcaaagagcttgagagattctcccttgactgccctgtcccatggctgactttcgaaaaagaggctatgcggaagctcacatatcttcgactgactttgcacgcgttccctgcaagcgatatgagtgttccttcaggtatcaataaccttaaagagcttacagaggtaacactatgctacaacgtacggtacatcaacagccccaacattaagatgacgacagacgcagttagcaaagaggttgccaagcatagcaacactattgaccttttcatcaacggcatcagagaagatgttattcggtcaagtgacaagaaggaagagagtgcaacaggatccgaagtcgatgcagcggaggatggtgctcaagcggctgatgaggccgcactgaggacagcaatacaggttcaaagcgagattgaagctgaaggtggaacagagagccatacttaa
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| Protein seq | MGSPETAALITSFMKKREELLKEWEPLPGRISELLEAGRITDAHERHYLAFVEGEVSSIVASLRMPLPPPRDRRGVDLIRRQKDWLEMLKHEMRDAIDMVNFLCKRHREEAPRALLRKPMRCFRRPMSFNYAIDMMKLLCDRHPRSLKLLYLAYYLYRVFSNDPRLKLPSSELMPSLHQAAQVEAAAVHDHLVGIDGTANELLGWLMAADKSLRVMAIAGPAGIGKTTLAMELHRRLRCQTHFQCHVVANLSRRPAHRSKQLLLQTILKQIMEQLEAPSSPNSSEITMLEDDPELLARNISECLKDKRYFALIDDIFDGSDLEMIKGAFPNNNCSSRILFTARDEQVSGWFLSNYNGVVHKTKPLNDSDSEKLLRTKAFSSMDGCLPDNLRLLCDEILNMCRGIPLFITSMADWLKQHQQQYGSSAIPRVEEVRLLLKQFEHWLSFDYSDELRQSSLYLSMFPQGYVFENKDHLVTILEDEGFIHEWDRSPDFGKRNFSWLLNRKIIIPAAENCGLNIDEDDLCQWQVNPFILRFLASRAAEMGLVFTSSTLTSAPSGGGNTTRIARRLALHHPDPQLPAMLQQMDLSQTRSLLISGAVDRTTVALDKFGYLVWLDLEGWENLKDEDLLQICTMFMLRYLSVRNTKVSKLAPQIKELRILRTLDISRTNISEIPSEVCELKRLQILDLRGTWIRHLPEKVKELIWLERLDISHTKTSDLPSGVCRLPNLETLDLRGTLIRQLPDQIVQLKSLEHLIVSGTGVGSGMIDSNRTVLTKIPETIHQLRYLKTLATIDLSEFSTKSIQSLGDLDRLEVLAITWSFHQCSDKDYQQALRSSIVRWRKLKSLTIHCGLGCSMEFLGSLIEPPNGLKKIKVIDGKFASVPRWIRGLKHLTFLQITVCKQVADDLKILAGLIELQHLVLGLEFIPEKAIVIEKEGFKELERFSLDCPVPWLTFEKEAMRKLTYLRLTLHAFPASDMSVPSGINNLKELTEVTLCYNVRYINSPNIKMTTDAVSKEVAKHSNTIDLFINGIREDVIRSSDKKEESATGSEVDAAEDGAQAADEAALRTAIQVQSEIEAEGGTESHT |
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| Function | Disease resistance protein Pikm1-TS [UniProtKB/Swiss-Prot:B5UBC1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0019960 | OsKeNa_11g0019960.01 | Chr11 | 24726899 | 24730736 | - | NAM | ||
| CDS seq | atgggaagtccggagacggcggcgctaataacttccttcatgaagaagcgggaggagttgttgaaggagtgggagcccctccctgggaggatctctgagctgctggaggctggacgcatcacagatgcccacgaaaggcactatttggcgttcgtggagggggaggtgagcagcattgtcgcgtccctgaggatgccgctgccgccacccagagatcgtcgtggggtcgatctcatccgtagacagaaggattggcttgagatgctgaagcacgagatgagggacgccatagatatggtgaattttctgtgtaaacggcaccgagaagaagcacctcgcgcgctgctgcgaaaacccatgcggtgcttccgccgcccaatgtctttcaactatgccatagatatgatgaaacttctgtgtgatcggcacccaaggtctctcaaacttctgtatctggcgtactatctctaccgtgtgttctccaatgatccacgcctcaagctcccaagctcggagctcatgccatcactgcatcaagcagcccaagtcgaggctgctgccgtccatgatcatcttgttggcatcgacggcacggcaaacgagctgctcggatggctcatggccgccgacaagagcctccgggtcatggccattgctggacccgccggcattggcaagaccactcttgccatggagctccaccgtcgactccggtgccaaactcatttccagtgccacgttgtggctaacttatcccgcaggccagctcacaggagcaagcagcttcttcttcaaaccatcctcaagcagatcatggagcaactggaggcaccatcatcacctaacagctcagaaatcacgatgttggaggacgacccagagctgttggctcgcaacatatcagaatgcctcaaggataagagatactttgctttgattgatgatatattcgacggatcagatttggaaatgatcaagggtgcatttcctaataataactgcagtagcagaatattgtttacagctcgcgatgagcaggtttctgggtggtttttgtctaattataatggggttgtgcataagacgaagcctctcaatgactcggattcagagaagctgcttcgcacaaaagcttttagttccatggatggttgccttccagacaatcttaggctattatgtgatgaaatcttgaacatgtgtagaggaataccattgttcataactagtatggcagattggttgaaacaacatcaacagcaatacggcagctctgcaattcctagggtggaagaagtacgcctgctgctgaaacagtttgaacactggttatcatttgattacagtgatgagctgagacaatcgtcactctacctaagcatgtttccacagggatatgtgtttgagaacaaggatcatcttgtcacgatattggaagacgaagggttcatccatgagtgggatcgtagtccagattttggaaagcggaatttctcttggttgctcaacaggaaaatcatcatcccagcagcagagaactgtggactcaatattgatgaagatgacttgtgccagtggcaggtcaatcctttcatactgaggtttcttgcctccagagcagcagagatgggtcttgtttttaccagctcaacgctcacctcagcaccgagcggtggtggcaacaccactcggatagcacgccgtctagctctccaccatcctgatccgcagcttccagcaatgctgcagcaaatggatttgtctcagactcgttcactactcatatctggtgcagtcgacagaacaacggtcgctcttgacaagtttggatatctggtgtggttggatcttgaaggctgggagaatttgaaggatgaggacttactgcagatatgcacaatgtttatgctgaggtatctgagcgtcaggaacacaaaggtcagcaagctcgcacctcagatcaaggagctgcgcatcctgaggacattggacataagccgcaccaacataagtgagatcccatcagaagtgtgtgagctaaaacgtttgcagattctggacctcagaggcacatggataagacatcttccagagaaagtcaaggaactgatctggctagagagattggatataagccacaccaagacaagtgatctcccctctggagtatgccggctacctaatctggagacgctagacctaagaggcacactgataaggcagttgccagatcaaattgtgcagctaaagagcctggaacatcttatcgttagtggtactggagttggatctggaatgattgactccaaccgaacagtgctaacaaagataccggagacgatccaccaattaagatatctaaagacgctagcaactatcgatttaagtgaattctctacaaagtcaatacagtctctcggtgatctggacagattggaggtcctcgcaataacatggtcctttcaccagtgcagtgataaagactaccaacaagctctacgatcatccatagtaagatggaggaagcttaagtccctgaccattcattgtggactcggatgttccatggagttcctgggttctctaatagaaccacctaacggacttaaaaaaattaaggtaatagatggaaaattcgctagtgttccccgatggatcagagggctcaagcatcttactttcttgcaaatcacggtctgcaaacaagtagcagatgatctcaagatcctcgcgggcttgatcgaattgcagcacctagtactaggcttggagttcattcccgaaaaagcaatagtgattgagaaagaagggttcaaagagcttgagagattctcccttgactgccctgtcccatggctgactttcgaaaaagaggctatgcggaagctcacatatcttcgactgactttgcacgcgttccctgcaagcgatatgagtgttccttcaggtatcaataaccttaaagagcttacagaggtaacactatgctacaacgtacggtacatcaacagccccaacattaagatgacgacagacgcagttagcaaagaggttgccaagcatagcaacactattgaccttttcatcaacggcatcagagaagatgttattcggtcaagtgacaagaaggaagagagtgcaacaggatccgaagtcgatgcagcggaggatggtgctcaagcggctgatgaggccgcactgaggacagcaatacaggttcaaagcgagattgaagctgaaggtggaacagagagccatacttaa
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| Protein seq | MGSPETAALITSFMKKREELLKEWEPLPGRISELLEAGRITDAHERHYLAFVEGEVSSIVASLRMPLPPPRDRRGVDLIRRQKDWLEMLKHEMRDAIDMVNFLCKRHREEAPRALLRKPMRCFRRPMSFNYAIDMMKLLCDRHPRSLKLLYLAYYLYRVFSNDPRLKLPSSELMPSLHQAAQVEAAAVHDHLVGIDGTANELLGWLMAADKSLRVMAIAGPAGIGKTTLAMELHRRLRCQTHFQCHVVANLSRRPAHRSKQLLLQTILKQIMEQLEAPSSPNSSEITMLEDDPELLARNISECLKDKRYFALIDDIFDGSDLEMIKGAFPNNNCSSRILFTARDEQVSGWFLSNYNGVVHKTKPLNDSDSEKLLRTKAFSSMDGCLPDNLRLLCDEILNMCRGIPLFITSMADWLKQHQQQYGSSAIPRVEEVRLLLKQFEHWLSFDYSDELRQSSLYLSMFPQGYVFENKDHLVTILEDEGFIHEWDRSPDFGKRNFSWLLNRKIIIPAAENCGLNIDEDDLCQWQVNPFILRFLASRAAEMGLVFTSSTLTSAPSGGGNTTRIARRLALHHPDPQLPAMLQQMDLSQTRSLLISGAVDRTTVALDKFGYLVWLDLEGWENLKDEDLLQICTMFMLRYLSVRNTKVSKLAPQIKELRILRTLDISRTNISEIPSEVCELKRLQILDLRGTWIRHLPEKVKELIWLERLDISHTKTSDLPSGVCRLPNLETLDLRGTLIRQLPDQIVQLKSLEHLIVSGTGVGSGMIDSNRTVLTKIPETIHQLRYLKTLATIDLSEFSTKSIQSLGDLDRLEVLAITWSFHQCSDKDYQQALRSSIVRWRKLKSLTIHCGLGCSMEFLGSLIEPPNGLKKIKVIDGKFASVPRWIRGLKHLTFLQITVCKQVADDLKILAGLIELQHLVLGLEFIPEKAIVIEKEGFKELERFSLDCPVPWLTFEKEAMRKLTYLRLTLHAFPASDMSVPSGINNLKELTEVTLCYNVRYINSPNIKMTTDAVSKEVAKHSNTIDLFINGIREDVIRSSDKKEESATGSEVDAAEDGAQAADEAALRTAIQVQSEIEAEGGTESHT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.035429 | 0.296581 | 0.087987 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0606400 | RBH | 2.511902 | 1.171710 | 0.169618 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39310 | RBH | 1.635008 | 0.758533 | 0.042027 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0606400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019790 | RBH | 1.457639 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019980 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019740 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019810 | RBH | 0.0 | 7.217703 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0356600 | RBH | 0.0294455 | 0.7655105 | 0.041654 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020290 | SBH | 0.000000 | 0.027919 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0372500 | RBH | 8.3602705 | 0.178841 | 0.087625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020050 | RBH | 0.0 | 0.030156 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020300 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019750 | SBH | 0.0 | 2.198174 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019640 | RBH | 0.0 | 2.092294 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019610 | RBH | 0.0 | 0.0 | 0.103604 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019980 | SBH | 0.0 | 0.0 | 0.0 |
