Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0019240 | OGI:11065550 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24685724-24689143 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaagtctgaacctttctgttaggaaagacatctggcctgtttgggtggctcgctgcttctgcttcccatgctttccttgttcgttcacccacagcaggatgaagaacaatctcctttagttgtctgaggtatctggtttggatgccagaaagaccgtctaggtgttcgcatatcagctgaagtgagataagttgtggcaaagatccattattgattgttaatagaactggattcgtttccagaaacacaaaacacatgcgccgcaggcttgtaaatgtctcagcttgtatgatgaaactttcagtacgatcagtgactagtttgagataaagcaagcaaggcagctcactgaggactgacaaatattcctgtgtcacattagttgaaaggtgcagctcagtgagatcaggaaacaaggcaatgaatgttggcaatgtggatgaattgccatgtagtttcaatgaactgagataatacatctttcctgagtgcagcctctgattgcacaattctcctagagcatacagggagccttctggcaatgcctggaagtcaattgacaatgcacgagaaccgcccacttctatgggatcttcaatgtacttcagaatggagtcaacaaggtcattattcatttggacaataagtagtgcaggatcatgatccataggcttaggctcacaccaaatcttcaTCttcttcaacctcttcatatgcacaataagttgtaggaatccctgatgcccattagcaacgaaacctcttagcgtctctatgttgagttgttgtggcggcagttcctttctcttggctggaactgcaacctgaagctcaaattttccaatcagatgaattaaacgaggcagccgaatgacttctatcggcagcacattgacctttgttttgcttacatagagtgtctccagcaattgaagtcggccaatttccataggtatactgctaatgctgggcccaaggctgaggtatctaagattccatagtttgcatatgtcttttagatgtccatcatgtagatcagtgcattcttccatgtccaacactctgatcagtttgtacttgcgaaaatcagaaatagcatcgcctgcgttCcccaagactgtaagagaacgaacacaggacaagtctgtgttcaaggtagatcttgaatctgtgtcattattaccatggataaagagatgacggacttttttctgttcagcaccaaagggcatgatgaatttcttagatatagacttgtgcaacatgaacgcatgcatgataccagtagttttgcatgtcttcactgttgcattttggcttggctcagcaggatgaatgatgctgcggtcaaccaatgtcttaaaatttacatcagccactctcatgtttccggctacaggatctcttcgtgtatatccctcagccatccatcgcctaattatgacattccttttgaggggacagtcagttgggaatagacttagatataacaaacaggtcctaacagtgtaatctggcagagcggtataattatccataagcacacctcgaagccttgcaaagttaggctcctcttcgtcttcacgttccagataatagcctaggtcacggcacaattctgcacaaaattgcccggtgggttcattttcgctgttcaattgcttggccacgctagcaagagcaagaggaagaccatcgcatttctttaggagaggtgctgaaccctgcacaatttcaggtgagcatctcccttggagagcaattaccctagaatcttcatctccaagagttctcattttgtacacataaccaagggttccatctgtgctgctattttctgatgagctgcatctattagctatggactgaatggtggtggtcacaataactctgccattacccttgaagatattccgtacaatgtcccagttctccatatgtatcatcttaacatcatcaataacaaccaagtacctaacatacaaattggtaatcataaagaaaaaggttagcagatatgaagtatcctgcaacctttatattactaaatgcataaactgtactattcgacttgaacaatgaattgaattcagccattatagtgaaacagtttaaaagacacaacctagctgagaaatcaacaaacagaaggtttaccatgctaacagatattcttttcatgccacattgagcaattaactaccaatcaatatatgacaacatgacatgattaaccaaaagccttacaccattggtggacatcaaagtttatttctgctactgggtaccaaggccgtgtttagttgcaaagtttttcttcaaacttccaacttttccatcgcataaaaactttcctacacaCacaaacttccaacttttccgtcacatcgttccaatttcaaccaaacttccaattttggtgtgaactaaacacaccccaagttcattcgagaggctggaaaaatcccacataaactgtattcaacttcaacaatgaattcaggtctgtttctcagcaattatgcatgatttgtagcaagctctactttcacacaaaaaaaaaaagagagagagaggaaaaaaatgggaagtcgtgaagaggaacacctgtccttgtccttgaggtagttggtgagagaagtctttgaatactcttctccaggacgaagctgtttgtgcatatctcttaggatgcaattggcatcgctattctccagcaaattgagggcaacccaagcacgggaaaggaatgcttcgctgagactgtcatagactgcccgcgcgagcgtggtcttCccggagccaccaaatccgacgacggcgaccaccatcagctgagcaggagccggctccagagagggcgaaggttcggcgggtagcagcagcagcttgcggagcttctccttggcttccgcgatacccacagggttatcgggctgagcaggttccgctgccgatggcgccgcgGCggcggcggcggcggcgctaggcgggctgaatatccgtgtgcgcgcttcctccgaacgcttccggagcttcttgatcttggtggcgaacttgtggcgggcgcgggatgttgtcgccatgtgcgccacccgttccgaccacgacgccccctccttgcaggtgacatggtgcagaaaacgctcgatgcagtcctctatatcatgggtaaggtcgcgcatctcctcgctgaacgccctcgccgcggcagtgggacgccgggcgccgcccctccgactgctgcagagctcgtcgtccatggcgccggccagcatgaggagctccttcttcaggaactcgcactcatccttctcgcgcttccacagctggtaattatccttgagctccgctaccagcaagccggtgacgccgctgaagaaggcattcgccgccgcttgctccgccggaacgaccat
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| CDS seq | atggtcgttccggcggagcaagcggcggcgaatgccttcttcagcggcgtcaccggcttgctggtagcggagctcaaggataattaccagctgtggaagcgcgagaaggatgagtgcgagttcctgaagaaggagctcctcatgctggccggcgccatggacgacgagctctgcagcagtcggaggggcggcgcccggcgtcccactgccgcggcgagggcgttcagcgaggagatgcgcgaccttacccatgatatagaggactgcatcgagcgttttctgcaccatgtcacctgcaaggagggggcgtcgtggtcggaacgggtggcgcacatggcgacaacatcccgcgcccgccacaagttcgccaccaagatcaagaagctccggaagcgttcggaggaagcgcgcacacggatattcagcccgcctagcgccgccgccgccgccGCcgcggcgccatcggcagcggaacctgctcagcccgataaccctgtgggtatcgcggaagccaaggagaagctccgcaagctgctgctgctacccgccgaaccttcgccctctctggagccggctcctgctcagctgatggtggtcgccgtcgtcggatttggtggctccggGaagaccacgctcgcgcgggcagtctatgacagtctcagcgaagcattcctttcccgtgcttgggttgccctcaatttgctggagaatagcgatgccaattgcatcctaagagatatgcacaaacagcttcgtcctggagaagagtattcaaagacttctctcaccaactacctcaaggacaaggacaggtacttggttgttattgatgatgttaagatgatacatatggagaactgggacattgtacggaatatcttcaagggtaatggcagagttattgtgaccaccaccattcagtccatagctaatagatgcagctcatcagaaaatagcagcacagatggaacccttggttatgtgtacaaaatgagaactcttggagatgaagattctagggtaattgctctccaagggagatgctcacctgaaattgtgcagggttcagcacctctcctaaagaaatgcgatggtcttcctcttgctcttgctagcgtggccaagcaattgaacagcgaaaatgaacccaccgggcaattttgtgcagaattgtgccgtgacctaggctattatctggaacgtgaagacgaagaggagcctaactttgcaaggcttcgaggtgtgcttatggataattataccgctctgccagattacactgttaggacctgtttgttatatctaagtctattcccaactgactgtcccctcaaaaggaatgtcataattaggcgatggatggctgagggatatacacgaagagatcctgtagccggaaacatgagagtggctgatgtaaattttaagacattggttgaccgcagcatcattcatcctgctgagccaagccaaaatgcaacagtgaagacatgcaaaactactggtatcatgcatgcgttcatgttgcacaagtctatatctaagaaattcatcatgccctttggtgctgaacagaaaaaagtccgtcatctctttatccatggtaataatgacacagattcaagatctaccttgaacacagacttgtcctgtgttcgttctcttacagtcttgggGaacgcaggcgatgctatttctgattttcgcaagtacaaactgatcagagtgttggacatggaagaatgcactgatctacatgatggacatctaaaagacatatgcaaactatggaatcttagatacctcagccttgggcccagcattagcagtatacctatggaaattggccgacttcaattgctggagacactctatgtaagcaaaacaaaggtcaatgtgctgccgatagaagtcattcggctgcctcgtttaattcatctgattggaaaatttgagcttcaggttgcagttccagccaagagaaaggaactgccgccacaacaactcaacatagagacgctaagaggtttcgttgctaatgggcatcagggattcctacaacttattgtgcatatgaagaggttgaagaaGAtgaagatttggtgtgagcctaagcctatggatcatgatcctgcactacttattgtccaaatgaataatgaccttgttgactccattctgaagtacattgaagatcccatagaagtgggcggttctcgtgcattgtcaattgacttccaggcattgccagaaggctccctgtatgctctaggagaattgtgcaatcagaggctgcactcaggaaagatgtattatctcagttcattgaaactacatggcaattcatccacattgccaacattcattgccttgtttcctgatctcactgagctgcacctttcaactaatgtgacacaggaatatttgtcagtcctcagtgagctgccttgcttgctttatctcaaactagtcactgatcgtactgaaagtttcatcatacaagctgagacatttacaagcctgcggcgcatgtgttttgtgtttctggaaacgaatccagttctattaacaatcaataatggatctttgccacaacttatctcacttcagctgatatgcgaacacctagacggtctttctggcatccaaaccagatacctcagacaactaaaggagattgttcttcatcctgctgtgggtgaacgaacaaggaaagcatgggaagcagaagcagcgagccacccaaacaggccagatgtctttcctaacagaaaggttcagacttga
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| Protein seq | MVVPAEQAAANAFFSGVTGLLVAELKDNYQLWKREKDECEFLKKELLMLAGAMDDELCSSRRGGARRPTAAARAFSEEMRDLTHDIEDCIERFLHHVTCKEGASWSERVAHMATTSRARHKFATKIKKLRKRSEEARTRIFSPPSAAAAAAAAPSAAEPAQPDNPVGIAEAKEKLRKLLLLPAEPSPSLEPAPAQLMVVAVVGFGGSGKTTLARAVYDSLSEAFLSRAWVALNLLENSDANCILRDMHKQLRPGEEYSKTSLTNYLKDKDRYLVVIDDVKMIHMENWDIVRNIFKGNGRVIVTTTIQSIANRCSSSENSSTDGTLGYVYKMRTLGDEDSRVIALQGRCSPEIVQGSAPLLKKCDGLPLALASVAKQLNSENEPTGQFCAELCRDLGYYLEREDEEEPNFARLRGVLMDNYTALPDYTVRTCLLYLSLFPTDCPLKRNVIIRRWMAEGYTRRDPVAGNMRVADVNFKTLVDRSIIHPAEPSQNATVKTCKTTGIMHAFMLHKSISKKFIMPFGAEQKKVRHLFIHGNNDTDSRSTLNTDLSCVRSLTVLGNAGDAISDFRKYKLIRVLDMEECTDLHDGHLKDICKLWNLRYLSLGPSISSIPMEIGRLQLLETLYVSKTKVNVLPIEVIRLPRLIHLIGKFELQVAVPAKRKELPPQQLNIETLRGFVANGHQGFLQLIVHMKRLKKMKIWCEPKPMDHDPALLIVQMNNDLVDSILKYIEDPIEVGGSRALSIDFQALPEGSLYALGELCNQRLHSGKMYYLSSLKLHGNSSTLPTFIALFPDLTELHLSTNVTQEYLSVLSELPCLLYLKLVTDRTESFIIQAETFTSLRRMCFVFLETNPVLLTINNGSLPQLISLQLICEHLDGLSGIQTRYLRQLKEIVLHPAVGERTRKAWEAEAASHPNRPDVFPNRKVQT |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0019240 | OsLima_11g0019240.01 | Chr11 | 24685724 | 24689143 | - | NAM | ||
| CDS seq | atggtcgttccggcggagcaagcggcggcgaatgccttcttcagcggcgtcaccggcttgctggtagcggagctcaaggataattaccagctgtggaagcgcgagaaggatgagtgcgagttcctgaagaaggagctcctcatgctggccggcgccatggacgacgagctctgcagcagtcggaggggcggcgcccggcgtcccactgccgcggcgagggcgttcagcgaggagatgcgcgaccttacccatgatatagaggactgcatcgagcgttttctgcaccatgtcacctgcaaggagggggcgtcgtggtcggaacgggtggcgcacatggcgacaacatcccgcgcccgccacaagttcgccaccaagatcaagaagctccggaagcgttcggaggaagcgcgcacacggatattcagcccgcctagcgccgccgccgccgccGCcgcggcgccatcggcagcggaacctgctcagcccgataaccctgtgggtatcgcggaagccaaggagaagctccgcaagctgctgctgctacccgccgaaccttcgccctctctggagccggctcctgctcagctgatggtggtcgccgtcgtcggatttggtggctccggGaagaccacgctcgcgcgggcagtctatgacagtctcagcgaagcattcctttcccgtgcttgggttgccctcaatttgctggagaatagcgatgccaattgcatcctaagagatatgcacaaacagcttcgtcctggagaagagtattcaaagacttctctcaccaactacctcaaggacaaggacaggtacttggttgttattgatgatgttaagatgatacatatggagaactgggacattgtacggaatatcttcaagggtaatggcagagttattgtgaccaccaccattcagtccatagctaatagatgcagctcatcagaaaatagcagcacagatggaacccttggttatgtgtacaaaatgagaactcttggagatgaagattctagggtaattgctctccaagggagatgctcacctgaaattgtgcagggttcagcacctctcctaaagaaatgcgatggtcttcctcttgctcttgctagcgtggccaagcaattgaacagcgaaaatgaacccaccgggcaattttgtgcagaattgtgccgtgacctaggctattatctggaacgtgaagacgaagaggagcctaactttgcaaggcttcgaggtgtgcttatggataattataccgctctgccagattacactgttaggacctgtttgttatatctaagtctattcccaactgactgtcccctcaaaaggaatgtcataattaggcgatggatggctgagggatatacacgaagagatcctgtagccggaaacatgagagtggctgatgtaaattttaagacattggttgaccgcagcatcattcatcctgctgagccaagccaaaatgcaacagtgaagacatgcaaaactactggtatcatgcatgcgttcatgttgcacaagtctatatctaagaaattcatcatgccctttggtgctgaacagaaaaaagtccgtcatctctttatccatggtaataatgacacagattcaagatctaccttgaacacagacttgtcctgtgttcgttctcttacagtcttgggGaacgcaggcgatgctatttctgattttcgcaagtacaaactgatcagagtgttggacatggaagaatgcactgatctacatgatggacatctaaaagacatatgcaaactatggaatcttagatacctcagccttgggcccagcattagcagtatacctatggaaattggccgacttcaattgctggagacactctatgtaagcaaaacaaaggtcaatgtgctgccgatagaagtcattcggctgcctcgtttaattcatctgattggaaaatttgagcttcaggttgcagttccagccaagagaaaggaactgccgccacaacaactcaacatagagacgctaagaggtttcgttgctaatgggcatcagggattcctacaacttattgtgcatatgaagaggttgaagaaGAtgaagatttggtgtgagcctaagcctatggatcatgatcctgcactacttattgtccaaatgaataatgaccttgttgactccattctgaagtacattgaagatcccatagaagtgggcggttctcgtgcattgtcaattgacttccaggcattgccagaaggctccctgtatgctctaggagaattgtgcaatcagaggctgcactcaggaaagatgtattatctcagttcattgaaactacatggcaattcatccacattgccaacattcattgccttgtttcctgatctcactgagctgcacctttcaactaatgtgacacaggaatatttgtcagtcctcagtgagctgccttgcttgctttatctcaaactagtcactgatcgtactgaaagtttcatcatacaagctgagacatttacaagcctgcggcgcatgtgttttgtgtttctggaaacgaatccagttctattaacaatcaataatggatctttgccacaacttatctcacttcagctgatatgcgaacacctagacggtctttctggcatccaaaccagatacctcagacaactaaaggagattgttcttcatcctgctgtgggtgaacgaacaaggaaagcatgggaagcagaagcagcgagccacccaaacaggccagatgtctttcctaacagaaaggttcagacttga
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| Protein seq | MVVPAEQAAANAFFSGVTGLLVAELKDNYQLWKREKDECEFLKKELLMLAGAMDDELCSSRRGGARRPTAAARAFSEEMRDLTHDIEDCIERFLHHVTCKEGASWSERVAHMATTSRARHKFATKIKKLRKRSEEARTRIFSPPSAAAAAAAAPSAAEPAQPDNPVGIAEAKEKLRKLLLLPAEPSPSLEPAPAQLMVVAVVGFGGSGKTTLARAVYDSLSEAFLSRAWVALNLLENSDANCILRDMHKQLRPGEEYSKTSLTNYLKDKDRYLVVIDDVKMIHMENWDIVRNIFKGNGRVIVTTTIQSIANRCSSSENSSTDGTLGYVYKMRTLGDEDSRVIALQGRCSPEIVQGSAPLLKKCDGLPLALASVAKQLNSENEPTGQFCAELCRDLGYYLEREDEEEPNFARLRGVLMDNYTALPDYTVRTCLLYLSLFPTDCPLKRNVIIRRWMAEGYTRRDPVAGNMRVADVNFKTLVDRSIIHPAEPSQNATVKTCKTTGIMHAFMLHKSISKKFIMPFGAEQKKVRHLFIHGNNDTDSRSTLNTDLSCVRSLTVLGNAGDAISDFRKYKLIRVLDMEECTDLHDGHLKDICKLWNLRYLSLGPSISSIPMEIGRLQLLETLYVSKTKVNVLPIEVIRLPRLIHLIGKFELQVAVPAKRKELPPQQLNIETLRGFVANGHQGFLQLIVHMKRLKKMKIWCEPKPMDHDPALLIVQMNNDLVDSILKYIEDPIEVGGSRALSIDFQALPEGSLYALGELCNQRLHSGKMYYLSSLKLHGNSSTLPTFIALFPDLTELHLSTNVTQEYLSVLSELPCLLYLKLVTDRTESFIIQAETFTSLRRMCFVFLETNPVLLTINNGSLPQLISLQLICEHLDGLSGIQTRYLRQLKEIVLHPAVGERTRKAWEAEAASHPNRPDVFPNRKVQT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.029423 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0225100 | SBH | 0.515996 | 0.357768 | 1.940268 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39260 | SBH | 0.0 | 0.012340 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0225100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024280 | SBH | 0.259908 | 9.612663 | 1.746912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019060 | RBH | 0.0 | 1.436532 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018880 | RBH | 0.279740 | 13.332742 | 1.624536 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007760 | SBH | 6.714519 | 2.015030 | 7.583820 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0361400 | SBH | 0.0049915 | 0.014131 | 0.009293 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024530 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0373400 | RBH | 9.40703 | 45.034685 | 0.03948 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019150 | SBH | 0.0 | 0.037771 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018860 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023740 | SBH | 0.0 | 0.0 | 0.357565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024110 | SBH | 0.0 | 1.827518 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024120 | SBH | 0.0 | 0.0 | 0.441210 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019130 | RBH | 0.0 | 15.055429 | 0.0 |
