Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g39260 | OGI:11061110 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:23377646-23378368 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGGAGCCGAAGGGGGAAAGGAGTACCTCTTTTGTTCCAAATGTGCTGTGAGCTTCTCCTTAAGCTGCTTGTCTGTCCATCTCTCGATCCCTGCAAGAGAGTCTCCATCTGTGCTCTCCTTGTCAGGGACCTGAGGCATGACTTGCCTGAGGATGCTTCTGAGCAGCGCCGCGAGATTGAGCTTCTGCGACGCCTGCACGCACGCCCGGGACTCGAACTTCTCCCCGAACTTGCGGTGCAGCGCCAATGCCAGCGTCGTCTTGCCGAGGCCGCCGAATCCGACGACGGCGAGGACCCTCAGGTCGGGCAGCCCCTCGGTCAGCCATGCCCCGAGCTTGCCGATGGCGTCCTCCATCCCCACCGACTCCGCGGCGCCGACGAGCTGCGGACCAGGCTGGGGGCGGTCGTTGACGTGGTAGGAAGGGGCGGATCTGGCGGCCTTCCCGTTCCCGGCGTCCGGCCGGCCGGGGTCCTTCACACCGTACCTCGTGCGGCGCTCGCCGACGCCCTGCGCGCGGTTCTTGAGGTCGACGACCCTGGCGGCGATGCCCCGGCGCTCCCAGAGCGTGGCCACGGCGTACCTCGCGCGGCGGAGGCCGGACAGGAGGCCCTCGCCGCGTGGCTGGCCGCCGAGGCGGTGGCTGAAGTCGTCGATGCAGTCCTCGATGTCGTAGGCGACGTCGCGCACCTGCTCCATCCAGTCCCCGGGTCTGCTCGTCAT
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| CDS seq | ATGACGAGCAGACCCGGGGACTGGATGGAGCAGGTGCGCGACGTCGCCTACGACATCGAGGACTGCATCGACGACTTCAGCCACCGCCTCGGCGGCCAGCCACGCGGCGAGGGCCTCCTGTCCGGCCTCCGCCGCGCGAGGTACGCCGTGGCCACGCTCTGGGAGCGCCGGGGCATCGCCGCCAGGGTCGTCGACCTCAAGAACCGCGCGCAGGGCGTCGGCGAGCGCCGCACGAGGTACGGTGTGAAGGACCCCGGCCGGCCGGACGCCGGGAACGGGAAGGCCGCCAGATCCGCCCCTTCCTACCACGTCAACGACCGCCCCCAGCCTGGTCCGCAGCTCGTCGGCGCCGCGGAGTCGGTGGGGATGGAGGACGCCATCGGCAAGCTCGGGGCATGGCTGACCGAGGGGCTGCCCGACCTGAGGGTCCTCGCCGTCGTCGGATTCGGCGGCCTCGGCAAGACGACGCTGGCATTGGCGCTGCACCGCAAGTTCGGGGAGAAGTTCGAGTCCCGGGCGTGCGTGCAGGCGTCGCAGAAGCTCAATCTCGCGGCGCTGCTCAGAAGCATCCTCAGGCAAGTCATGCCTCAGGTCCCTGACAAGGAGAGCACAGATGGAGACTCTCTTGCAGGGATCGAGAGATGGACAGACAAGCAGCTTAAGGAGAAGCTCACAGCACATTTGGAACAAAAGAGGTACTCCTTTCCCCCTTCGGCTCCATGA
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| Protein seq | MTSRPGDWMEQVRDVAYDIEDCIDDFSHRLGGQPRGEGLLSGLRRARYAVATLWERRGIAARVVDLKNRAQGVGERRTRYGVKDPGRPDAGNGKAARSAPSYHVNDRPQPGPQLVGAAESVGMEDAIGKLGAWLTEGLPDLRVLAVVGFGGLGKTTLALALHRKFGEKFESRACVQASQKLNLAALLRSILRQVMPQVPDKESTDGDSLAGIERWTDKQLKEKLTAHLEQKRYSFPPSAP |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g39260 | LOC_Os11g39260.1 | Chr11 | 23377646 | 23378368 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGAGCAGACCCGGGGACTGGATGGAGCAGGTGCGCGACGTCGCCTACGACATCGAGGACTGCATCGACGACTTCAGCCACCGCCTCGGCGGCCAGCCACGCGGCGAGGGCCTCCTGTCCGGCCTCCGCCGCGCGAGGTACGCCGTGGCCACGCTCTGGGAGCGCCGGGGCATCGCCGCCAGGGTCGTCGACCTCAAGAACCGCGCGCAGGGCGTCGGCGAGCGCCGCACGAGGTACGGTGTGAAGGACCCCGGCCGGCCGGACGCCGGGAACGGGAAGGCCGCCAGATCCGCCCCTTCCTACCACGTCAACGACCGCCCCCAGCCTGGTCCGCAGCTCGTCGGCGCCGCGGAGTCGGTGGGGATGGAGGACGCCATCGGCAAGCTCGGGGCATGGCTGACCGAGGGGCTGCCCGACCTGAGGGTCCTCGCCGTCGTCGGATTCGGCGGCCTCGGCAAGACGACGCTGGCATTGGCGCTGCACCGCAAGTTCGGGGAGAAGTTCGAGTCCCGGGCGTGCGTGCAGGCGTCGCAGAAGCTCAATCTCGCGGCGCTGCTCAGAAGCATCCTCAGGCAAGTCATGCCTCAGGTCCCTGACAAGGAGAGCACAGATGGAGACTCTCTTGCAGGGATCGAGAGATGGACAGACAAGCAGCTTAAGGAGAAGCTCACAGCACATTTGGAACAAAAGAGGTACTCCTTTCCCCCTTCGGCTCCATGA
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| Protein seq | MTSRPGDWMEQVRDVAYDIEDCIDDFSHRLGGQPRGEGLLSGLRRARYAVATLWERRGIAARVVDLKNRAQGVGERRTRYGVKDPGRPDAGNGKAARSAPSYHVNDRPQPGPQLVGAAESVGMEDAIGKLGAWLTEGLPDLRVLAVVGFGGLGKTTLALALHRKFGEKFESRACVQASQKLNLAALLRSILRQVMPQVPDKESTDGDSLAGIERWTDKQLKEKLTAHLEQKRYSFPPSAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.012340 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0604900 | SBH | 0.163145 | 0.0 | 0.599114 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39160 | SBH | 0.092575 | 0.0 | 0.128549 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0604900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019930 | RBH | 0.0 | 0.0 | 0.520474 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019690 | RBH | 0.0 | 5.772852 | 4.157660 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019280 | SBH | 0.000000 | 0.042257 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019780 | RBH | 0.000000 | 13.340145 | 5.072038 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0359000 | SBH | 3.631289 | 6.2978845 | 3.2944695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020240 | RBH | 0.000000 | 0.588899 | 0.410910 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0374200 | SBH | 1.109171 | 2.394498 | 0.3459235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020270 | SBH | 0.134517 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020250 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019700 | RBH | 0.0 | 24.861574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019500 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019760 | SBH | 0.053878 | 0.764113 | 0.759471 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020150 | SBH | 0.750866 | 5.503851 | 2.506739 |
