Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0023740 | OGI:11081630 | 8/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:31150546-31154206 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagtcggcggcggcgagcgcactcttgaagagcgtgatggggaggctgttcatggcgctggagaaggagtacagcaagcacaagggcctcgcccaagaaacccactctctgcagcaggacctccgcatgatcgctgccgccatggacgaccagctccgtgtcctggggaggagcgacgcacggaacgccgtcgcgcggctccacaccgaggagatgctcgatctctcgcacgacatcgaggactgcgtcgaccgcttcttgcaccgcctcacctgcaaccacaaacgcggcagcggcagcaatggcgccggacccggaggagcgtcgtccatggtgcgccggatggctcacgagctcagcaaggtccagagccggtcaagcttcgccgacgagatccagaagctcaagaggcgcatcagggaggcgcaccagcgtgtcatggacatcaaatctattgtggatgtcatcgccggcggccaacccaccacaggtgccatgagctcgtcggcaacagcgccatgccggaatacatgcaacccagtgggcatcggagagcccgtggaggagctcctctcgctgctggacgaggtggagggcgagccagaacagatgagggtcatctctgtcgttgggtttggcggattggggaagaccactcttgccagggcgatctatgatagccctggcgcaaagggcaaattctcccaccgtgcatgggtcaccatcggtacctctccggagagagacagtaggatcctgcatgctctactccagcaagttcttcccaaagacgccattggtgttgatgggcaacatgaccttgaagcattgctcaaagaatacctcaaggacaagaggttagttcacacacacacacacacacacacacacagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacactctaatgatccaacatgattctgcactgatgactatttcatctgcataactgaactttcgatcgacttttgtttttgctcatttatcaatttcattggttcaccgtttaagaacccaaaataattcaggggaatggaacttcaaccagaaagaaaaaatgcaaaccacttttgttaaattcaaacaaatttgattttcattttatcagaggaacatcctcctggcactcactgtttatagttctgactattgcattagcagaatttatgttttactactcaattttcctactattttcccaatttggctattaggtatttaattgttatggatgacatcaatatggaacaatggagcatcataagatcaacatttgtagacaacggtacaagcagcaggataatactgaccacaaccattcagtcagtagcaaatatgtgcagccatggcaatggttatgtgtataaaatgaacacacttggtgaagaagactctaaaacactagcatttccagggtttagatcacctgaattggagcaaggttcagaatcattattagggaaatgcgatggccttcctcttgctctggtcagtgtttctgattatctgaagagctcaagtgagcccacaggagagctatgtgctaagctgtgccgcaaccttggatctcatctgaaagaacgggatggccattacagcttttcagaactcaggaaggtgctccttgacagctatgacagtttttctggctatgctctgagctgcttgctgtatcttggtatattccccaacaatcgtcctctcaagaagaaagttgtaatcagacggtggttagccgaaggatatgcacgaagtgactctcttcgtagagaagaggatattgcagatgagaatttcagtaagcttattgaccagaatatcattcagcctgttgacacaagaaacaattctgaagtaaaaacgtgcaaaactcatggaattatgcatgaatttttgctgaacaagtccttgtcacagatattcatcgcgaaatcatctcgtgatcatccaaggctaggtatcaatactaatgcacgccacctttctgttcatgctggtgaactgacagagagcgtggaatctgatgaagaattatctcgtgtacgatctctgacaatctttggggatgcaggacatgcaatttgctatgttcgtaaatgcaaattgatacgagtcttggatctacaagaatgcaatgatttggatgatgaacacctgaaatacatatgcaaactatggcatctgaaatacctgagctttgggagcaatatcagtgagcttccaaggagcattgaaggacttcattgtttagagacactggatttaaggagaaccgagataaagtttttgcccattgaagcaatcatgctgccccacttagctcacctttttggaaagtttatgcttcatagagatgatgtgaatagtgtgaacaagatgactaaactacaaaaattcttctcttccaaaaagagcaatctgcaaactttagcaggatttatcactgacgaaagcaaaggttttctgcaacatattggtcatatgaaaaagctgaggaaggttaagatatggttcaaacatgttgcaggtagcagtaattacatagctgatctttcacaggccattcaggaattcaccaaggctcccattgatagggatattgaccgttctctctcacttgattctgaagaatgtcctgaaaattttctgagttcgcttgatttggagacatgctctgaaggttccaaatatgccctgaggtcactaaaattgaatggagaacttcaccggttgccaccatttgttactttgctgtcaggtctcacggagctttgcatttcgtcagctacgttaacacaaggtcatctatcagcactgatcaatctaaacagactgctctacctcaaactggttgcatataagctagtgaatttcgaaataaaacatggaacattcccgagcttgcgacgcctgtgctttgtggtgaaaagtgtcacctctgctctgccaacaatcgagcatggagctctcccaaatctcatctcacttcagctgctctgtcaaggtctagttggtctttctggcatcgagatcaaacacatgaaatatctcaaggaagtcacgattaactctggagtggctatacaatgggaacaggcagcaaagaaccacccgaataggcctaaaattttgatcctcagaaaggttaatccaatggaaagcgaggaaccagaaagaccttgtgccataagggagcagagaaaaatttctgtagctcaaacgacaagtttagatgatggactggactctagcctcaataagatgagactttcaaagccttcttcttcacggcttcaggttttcgttcatccggtggtgataacggccactgaggcagccccccagtcttccttggcaaatctctagcataaatatgccactgcagcaggtagacttcaataaagaccattcaatctttttgttgtgtaattttaaatttttgtcggtttgttgttcagttacattgaccagatttctctcttccgatacctgttgtgtgatgtgcactacatgcagtacatgtctgttggaaggaagtgataaacagtatgctaatttacctcagaacaca
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| CDS seq | atggagtcggcggcggcgagcgcactcttgaagagcgtgatggggaggctgttcatggcgctggagaaggagtacagcaagcacaagggcctcgcccaagaaacccactctctgcagcaggacctccgcatgatcgctgccgccatggacgaccagctccgtgtcctggggaggagcgacgcacggaacgccgtcgcgcggctccacaccgaggagatgctcgatctctcgcacgacatcgaggactgcgtcgaccgcttcttgcaccgcctcacctgcaaccacaaacgcggcagcggcagcaatggcgccggacccggaggagcgtcgtccatggtgcgccggatggctcacgagctcagcaaggtccagagccggtcaagcttcgccgacgagatccagaagctcaagaggcgcatcagggaggcgcaccagcgtgtcatggacatcaaatctattgtggatgtcatcgccggcggccaacccaccacaggtgccatgagctcgtcggcaacagcgccatgccggaatacatgcaacccagtgggcatcggagagcccgtggaggagctcctctcgctgctggacgaggtggagggcgagccagaacagatgagggtcatctctgtcgttgggtttggcggattggggaagaccactcttgccagggcgatctatgatagccctggcgcaaagggcaaattctcccaccgtgcatgggtcaccatcggtacctctccggagagagacagtaggatcctgcatgctctactccagcaagttcttcccaaagacgccattggtgttgatgggcaacatgaccttgaagcattgctcaaagaatacctcaaggacaagaggtatttaattgttatggatgacatcaatatggaacaatggagcatcataagatcaacatttgtagacaacggtacaagcagcaggataatactgaccacaaccattcagtcagtagcaaatatgtgcagccatggcaatggttatgtgtataaaatgaacacacttggtgaagaagactctaaaacactagcatttccagggtttagatcacctgaattggagcaaggttcagaatcattattagggaaatgcgatggccttcctcttgctctggtcagtgtttctgattatctgaagagctcaagtgagcccacaggagagctatgtgctaagctgtgccgcaaccttggatctcatctgaaagaacgggatggccattacagcttttcagaactcaggaaggtgctccttgacagctatgacagtttttctggctatgctctgagctgcttgctgtatcttggtatattccccaacaatcgtcctctcaagaagaaagttgtaatcagacggtggttagccgaaggatatgcacgaagtgactctcttcgtagagaagaggatattgcagatgagaatttcagtaagcttattgaccagaatatcattcagcctgttgacacaagaaacaattctgaagtaaaaacgtgcaaaactcatggaattatgcatgaatttttgctgaacaagtccttgtcacagatattcatcgcgaaatcatctcgtgatcatccaaggctaggtatcaatactaatgcacgccacctttctgttcatgctggtgaactgacagagagcgtggaatctgatgaagaattatctcgtgtacgatctctgacaatctttggggatgcaggacatgcaatttgctatgttcgtaaatgcaaattgatacgagtcttggatctacaagaatgcaatgatttggatgatgaacacctgaaatacatatgcaaactatggcatctgaaatacctgagctttgggagcaatatcagtgagcttccaaggagcattgaaggacttcattgtttagagacactggatttaaggagaaccgagataaagtttttgcccattgaagcaatcatgctgccccacttagctcacctttttggaaagtttatgcttcatagagatgatgtgaatagtgtgaacaagatgactaaactacaaaaattcttctcttccaaaaagagcaatctgcaaactttagcaggatttatcactgacgaaagcaaaggttttctgcaacatattggtcatatgaaaaagctgaggaaggttaagatatggttcaaacatgttgcaggtagcagtaattacatagctgatctttcacaggccattcaggaattcaccaaggctcccattgatagggatattgaccgttctctctcacttgattctgaagaatgtcctgaaaattttctgagttcgcttgatttggagacatgctctgaaggttccaaatatgccctgaggtcactaaaattgaatggagaacttcaccggttgccaccatttgttactttgctgtcaggtctcacggagctttgcatttcgtcagctacgttaacacaaggtcatctatcagcactgatcaatctaaacagactgctctacctcaaactggttgcatataagctagtgaatttcgaaataaaacatggaacattcccgagcttgcgacgcctgtgctttgtggtgaaaagtgtcacctctgctctgccaacaatcgagcatggagctctcccaaatctcatctcacttcagctgctctgtcaaggtctagttggtctttctggcatcgagatcaaacacatgaaatatctcaaggaagtcacgattaactctggagtggctatacaatgggaacaggcagcaaagaaccacccgaataggcctaaaattttgatcctcagaaaggttaatccaatggaaagcgaggaaccagaaagaccttgtgccataagggagcagagaaaaatttctgtagctcaaacgacaagtttagatgatggactggactctagcctcaataagatgagactttcaaagccttcttcttcacggcttcaggttttcgttcatccggtggtgataacggccactgaggcagccccccagtcttccttggcaaatctctag
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| Protein seq | MESAAASALLKSVMGRLFMALEKEYSKHKGLAQETHSLQQDLRMIAAAMDDQLRVLGRSDARNAVARLHTEEMLDLSHDIEDCVDRFLHRLTCNHKRGSGSNGAGPGGASSMVRRMAHELSKVQSRSSFADEIQKLKRRIREAHQRVMDIKSIVDVIAGGQPTTGAMSSSATAPCRNTCNPVGIGEPVEELLSLLDEVEGEPEQMRVISVVGFGGLGKTTLARAIYDSPGAKGKFSHRAWVTIGTSPERDSRILHALLQQVLPKDAIGVDGQHDLEALLKEYLKDKRYLIVMDDINMEQWSIIRSTFVDNGTSSRIILTTTIQSVANMCSHGNGYVYKMNTLGEEDSKTLAFPGFRSPELEQGSESLLGKCDGLPLALVSVSDYLKSSSEPTGELCAKLCRNLGSHLKERDGHYSFSELRKVLLDSYDSFSGYALSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARSDSLRREEDIADENFSKLIDQNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLSQIFIAKSSRDHPRLGINTNARHLSVHAGELTESVESDEELSRVRSLTIFGDAGHAICYVRKCKLIRVLDLQECNDLDDEHLKYICKLWHLKYLSFGSNISELPRSIEGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLHRDDVNSVNKMTKLQKFFSSKKSNLQTLAGFITDESKGFLQHIGHMKKLRKVKIWFKHVAGSSNYIADLSQAIQEFTKAPIDRDIDRSLSLDSEECPENFLSSLDLETCSEGSKYALRSLKLNGELHRLPPFVTLLSGLTELCISSATLTQGHLSALINLNRLLYLKLVAYKLVNFEIKHGTFPSLRRLCFVVKSVTSALPTIEHGALPNLISLQLLCQGLVGLSGIEIKHMKYLKEVTINSGVAIQWEQAAKNHPNRPKILILRKVNPMESEEPERPCAIREQRKISVAQTTSLDDGLDSSLNKMRLSKPSSSRLQVFVHPVVITATEAAPQSSLANL |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0023740 | OsLiXu_11g0023740.01 | Chr11 | 31150546 | 31154206 | + | NAM | ||
| CDS seq | atggagtcggcggcggcgagcgcactcttgaagagcgtgatggggaggctgttcatggcgctggagaaggagtacagcaagcacaagggcctcgcccaagaaacccactctctgcagcaggacctccgcatgatcgctgccgccatggacgaccagctccgtgtcctggggaggagcgacgcacggaacgccgtcgcgcggctccacaccgaggagatgctcgatctctcgcacgacatcgaggactgcgtcgaccgcttcttgcaccgcctcacctgcaaccacaaacgcggcagcggcagcaatggcgccggacccggaggagcgtcgtccatggtgcgccggatggctcacgagctcagcaaggtccagagccggtcaagcttcgccgacgagatccagaagctcaagaggcgcatcagggaggcgcaccagcgtgtcatggacatcaaatctattgtggatgtcatcgccggcggccaacccaccacaggtgccatgagctcgtcggcaacagcgccatgccggaatacatgcaacccagtgggcatcggagagcccgtggaggagctcctctcgctgctggacgaggtggagggcgagccagaacagatgagggtcatctctgtcgttgggtttggcggattggggaagaccactcttgccagggcgatctatgatagccctggcgcaaagggcaaattctcccaccgtgcatgggtcaccatcggtacctctccggagagagacagtaggatcctgcatgctctactccagcaagttcttcccaaagacgccattggtgttgatgggcaacatgaccttgaagcattgctcaaagaatacctcaaggacaagaggtatttaattgttatggatgacatcaatatggaacaatggagcatcataagatcaacatttgtagacaacggtacaagcagcaggataatactgaccacaaccattcagtcagtagcaaatatgtgcagccatggcaatggttatgtgtataaaatgaacacacttggtgaagaagactctaaaacactagcatttccagggtttagatcacctgaattggagcaaggttcagaatcattattagggaaatgcgatggccttcctcttgctctggtcagtgtttctgattatctgaagagctcaagtgagcccacaggagagctatgtgctaagctgtgccgcaaccttggatctcatctgaaagaacgggatggccattacagcttttcagaactcaggaaggtgctccttgacagctatgacagtttttctggctatgctctgagctgcttgctgtatcttggtatattccccaacaatcgtcctctcaagaagaaagttgtaatcagacggtggttagccgaaggatatgcacgaagtgactctcttcgtagagaagaggatattgcagatgagaatttcagtaagcttattgaccagaatatcattcagcctgttgacacaagaaacaattctgaagtaaaaacgtgcaaaactcatggaattatgcatgaatttttgctgaacaagtccttgtcacagatattcatcgcgaaatcatctcgtgatcatccaaggctaggtatcaatactaatgcacgccacctttctgttcatgctggtgaactgacagagagcgtggaatctgatgaagaattatctcgtgtacgatctctgacaatctttggggatgcaggacatgcaatttgctatgttcgtaaatgcaaattgatacgagtcttggatctacaagaatgcaatgatttggatgatgaacacctgaaatacatatgcaaactatggcatctgaaatacctgagctttgggagcaatatcagtgagcttccaaggagcattgaaggacttcattgtttagagacactggatttaaggagaaccgagataaagtttttgcccattgaagcaatcatgctgccccacttagctcacctttttggaaagtttatgcttcatagagatgatgtgaatagtgtgaacaagatgactaaactacaaaaattcttctcttccaaaaagagcaatctgcaaactttagcaggatttatcactgacgaaagcaaaggttttctgcaacatattggtcatatgaaaaagctgaggaaggttaagatatggttcaaacatgttgcaggtagcagtaattacatagctgatctttcacaggccattcaggaattcaccaaggctcccattgatagggatattgaccgttctctctcacttgattctgaagaatgtcctgaaaattttctgagttcgcttgatttggagacatgctctgaaggttccaaatatgccctgaggtcactaaaattgaatggagaacttcaccggttgccaccatttgttactttgctgtcaggtctcacggagctttgcatttcgtcagctacgttaacacaaggtcatctatcagcactgatcaatctaaacagactgctctacctcaaactggttgcatataagctagtgaatttcgaaataaaacatggaacattcccgagcttgcgacgcctgtgctttgtggtgaaaagtgtcacctctgctctgccaacaatcgagcatggagctctcccaaatctcatctcacttcagctgctctgtcaaggtctagttggtctttctggcatcgagatcaaacacatgaaatatctcaaggaagtcacgattaactctggagtggctatacaatgggaacaggcagcaaagaaccacccgaataggcctaaaattttgatcctcagaaaggttaatccaatggaaagcgaggaaccagaaagaccttgtgccataagggagcagagaaaaatttctgtagctcaaacgacaagtttagatgatggactggactctagcctcaataagatgagactttcaaagccttcttcttcacggcttcaggttttcgttcatccggtggtgataacggccactgaggcagccccccagtcttccttggcaaatctctag
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| Protein seq | MESAAASALLKSVMGRLFMALEKEYSKHKGLAQETHSLQQDLRMIAAAMDDQLRVLGRSDARNAVARLHTEEMLDLSHDIEDCVDRFLHRLTCNHKRGSGSNGAGPGGASSMVRRMAHELSKVQSRSSFADEIQKLKRRIREAHQRVMDIKSIVDVIAGGQPTTGAMSSSATAPCRNTCNPVGIGEPVEELLSLLDEVEGEPEQMRVISVVGFGGLGKTTLARAIYDSPGAKGKFSHRAWVTIGTSPERDSRILHALLQQVLPKDAIGVDGQHDLEALLKEYLKDKRYLIVMDDINMEQWSIIRSTFVDNGTSSRIILTTTIQSVANMCSHGNGYVYKMNTLGEEDSKTLAFPGFRSPELEQGSESLLGKCDGLPLALVSVSDYLKSSSEPTGELCAKLCRNLGSHLKERDGHYSFSELRKVLLDSYDSFSGYALSCLLYLGIFPNNRPLKKKVVIRRWLAEGYARSDSLRREEDIADENFSKLIDQNIIQPVDTRNNSEVKTCKTHGIMHEFLLNKSLSQIFIAKSSRDHPRLGINTNARHLSVHAGELTESVESDEELSRVRSLTIFGDAGHAICYVRKCKLIRVLDLQECNDLDDEHLKYICKLWHLKYLSFGSNISELPRSIEGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLHRDDVNSVNKMTKLQKFFSSKKSNLQTLAGFITDESKGFLQHIGHMKKLRKVKIWFKHVAGSSNYIADLSQAIQEFTKAPIDRDIDRSLSLDSEECPENFLSSLDLETCSEGSKYALRSLKLNGELHRLPPFVTLLSGLTELCISSATLTQGHLSALINLNRLLYLKLVAYKLVNFEIKHGTFPSLRRLCFVVKSVTSALPTIEHGALPNLISLQLLCQGLVGLSGIEIKHMKYLKEVTINSGVAIQWEQAAKNHPNRPKILILRKVNPMESEEPERPCAIREQRKISVAQTTSLDDGLDSSLNKMRLSKPSSSRLQVFVHPVVITATEAAPQSSLANL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.357565 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0686500 | SBH | 0.321495 | 0.197166 | 0.314310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45930 | SBH | 0.217355 | 0.132576 | 0.080888 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0686500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024390 | SBH | 0.000000 | 6.231301 | 0.302483 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024220 | SBH | 0.072297 | 1.596504 | 0.651798 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023930 | RBH | 0.0 | 2.924146 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023720 | RBH | 0.025616 | 0.012910 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024270 | RBH | 0.0 | 0.0 | 1.457232 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0439300 | SBH | 0.1263015 | 3.8706495 | 0.020055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024530 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0438300 | RBH | 1.0687875 | 2.8683555 | 1.0792015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024440 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024360 | SBH | 0.380983 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023750 | SBH | 2.453158 | 14.942351 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023700 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024110 | RBH | 0.0 | 1.827518 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024120 | RBH | 0.0 | 0.0 | 0.441210 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024350 | RBH | 0.000000 | 7.190678 | 1.220792 |
