Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017820 | OGI:11062210 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23049424-23049921 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggtagattcgtcttctgttttcagcactattccatctctgcagtccctccatctttcaagctgctcgcttctaggcacaagccaatcgatgacacaactaaacctcacaagacttgtggagcttgatgtttcatttaacaaatttggccctccacttggtacaagtagtgtcctagagttcttggattcaatggagaacataagatatcttgaccttagtgggacattgatattgtcaggtagagtgccacctcagcttggtaacctttcaaccctgagacaccttggcctcggtttcatgccaaatatgtactcaactgatatgtcgtggttaacccatcttcaacagcttgagtaccttggcatggacaatgtaaatctcagcacaatagctgattggcctcttgtggtgaacatgattccatctctgaaggtcctccacctttttggctgttcacttcaaagtgcaaaccaatcgcttACacacACCTAA
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| CDS seq | atggcggtagattcgtcttctgttttcagcactattccatctctgcagtccctccatctttcaagctgctcgcttctaggcacaagccaatcgatgacacaactaaacctcacaagacttgtggagcttgatgtttcatttaacaaatttggccctccacttggtacaagtagtgtcctagagttcttggattcaatggagaacataagatatcttgaccttagtgggacattgatattgtcaggtagagtgccacctcagcttggtaacctttcaaccctgagacaccttggcctcggtttcatgccaaatatgtactcaactgatatgtcgtggttaacccatcttcaacagcttgagtaccttggcatggacaatgtaaatctcagcacaatagctgattggcctcttgtggtgaacatgattccatctctgaaggtcctccacctttttggctgttcacttcaaagtgcaaaccaatcgcttACacacACCTAA
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| Protein seq | MAVDSSSVFSTIPSLQSLHLSSCSLLGTSQSMTQLNLTRLVELDVSFNKFGPPLGTSSVLEFLDSMENIRYLDLSGTLILSGRVPPQLGNLSTLRHLGLGFMPNMYSTDMSWLTHLQQLEYLGMDNVNLSTIADWPLVVNMIPSLKVLHLFGCSLQSANQSLTHT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017820 | OsLima_11g0017820.01 | Chr11 | 23049424 | 23049921 | + | NAM | ||
| CDS seq | atggcggtagattcgtcttctgttttcagcactattccatctctgcagtccctccatctttcaagctgctcgcttctaggcacaagccaatcgatgacacaactaaacctcacaagacttgtggagcttgatgtttcatttaacaaatttggccctccacttggtacaagtagtgtcctagagttcttggattcaatggagaacataagatatcttgaccttagtgggacattgatattgtcaggtagagtgccacctcagcttggtaacctttcaaccctgagacaccttggcctcggtttcatgccaaatatgtactcaactgatatgtcgtggttaacccatcttcaacagcttgagtaccttggcatggacaatgtaaatctcagcacaatagctgattggcctcttgtggtgaacatgattccatctctgaaggtcctccacctttttggctgttcacttcaaagtgcaaaccaatcgcttACacacACCTAA
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| Protein seq | MAVDSSSVFSTIPSLQSLHLSSCSLLGTSQSMTQLNLTRLVELDVSFNKFGPPLGTSSVLEFLDSMENIRYLDLSGTLILSGRVPPQLGNLSTLRHLGLGFMPNMYSTDMSWLTHLQQLEYLGMDNVNLSTIADWPLVVNMIPSLKVLHLFGCSLQSANQSLTHT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0558900 | SBH | 0.0 | 0.0 | 0.513125 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35450 | SBH | 0.0 | 0.0 | 0.129496 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0558900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017460 | SBH | 0.0 | 0.000000 | 0.367034 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017680 | SBH | 0.000000 | 0.0 | 0.164889 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017400 | SBH | 0.0 | 0.697142 | 1.189766 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017020 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017310 | SBH | 0.000000 | 0.0 | 0.860574 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0328100 | RBH | 0 | 0.014767 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017940 | SBH | 0.025503 | 0.000000 | 0.045280 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0335900 | SBH | 0.073678 | 0.892234 | 0.140461 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017790 | RBH | 0.0 | 0.010633 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017350 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017350 | SBH | 0.024961 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017370 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017610 | SBH | 0.0 | 0.000000 | 0.0 |
