Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0017400 | OGI:11010520 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:20433448-20436684 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgatggataataacacaagcatccatcaagccacttgctataccaaaacacacagtgaaccagcatctcacactgcagctaatcaatcacttagccatgctcatgcgtcatccgaccatcgccgccgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggcggtcagctgcaggaggattgctgccaatggcgaggcgtccggtgcagcaaccgcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtacctcgatctcagcatgaacaaccttgcaggttccactggacatgtccctgagttcttgggctctttcagaagcctgagatatctgaatctatctgggatagtgttctccggcatggtgccgcctcagctcggtaacctttcgaacttgcgatatctcgatctctccaggataagattatccggcatggttccatttctgtacattaatgatggttcatggttagcacacttgtccaatttgcaatatctgaaacttgatggggtaaaccttagcacagtagttgattggccacatgttctgaacatgatcccttctctgaagattgttagcctttcttcttgctcacttcagagtgcaaaccagtctctcccagagcttagtttcaaggaacttgagatgcttgatctttccaacaatgattttaaccacccagctgagtctagttggatttggaacctgacatctctcaagcatctcaatcttagctcgactagtttgtacggtgatattccgcaagcgctaggaaacatgctgtccctccaagttcttgatttctcatttgatgatcataaggatagcatgggcatgagcgtgtcgaaaaatggcaagatgggcaccatgaaagcaaacttgaagaatctatgcaatttggaagttctagacctcgattgtaggctagaatatggaaatattatggatatatttcagagtttgccacagtgttcacccagcaaactgaaggaagttcatttggctggcaacagtttaaccgggatgctaccaaattggattggaaggctaacaagcttagtcactcttgacctcttcaataacagcatcactggacaggtgccttctgaaataggtatgctcacaaatctgaggaatttgtacctacatttcaataacatgagtggtaccatcacagagaagcactttgcgcacctgacgagcttgaagtcgatatatttgtgttacaatcatttgaagattgtgatggatcctcagtggttacctcccttcaaattagagaaggcttactttgcatctattacgatgggcccctcatttcctagatggcttcaatcacaggttgatattgtcgcacttgctatgaatgatgcaggcataaatgatacattcccagactggttctctacaaccttttcaaaggccaagttgttggaatttcccggtaatcaaatcagtggtggattgccaacaaatatggaaaacatgtcattggaaaaattatatctgaaatcgaaccaaatagcgggtctgattcctcgcatgccgcgaaacctcactacattagatttatcaaacaactcattgtcaggacctctgccactaaatattggatctccaaaactagctgagttgaatctgttatccaaccgtatcaccgggaatgttccacaatctatttgtgaactgcagaatttacatggcctagacttatccaacaatctacttgacggagagtttcctcaatgttctgggatgagcatgatgtcattttttcgtctgagtaacaacagcttttctggcaacttcccatcttttcttcagggttggacagagttaagcttccttgatctttcatggaataagttctctgggaatttgcctacatggattggaaatttcagcaagctagaaattctgcggcttaagcataacatgttctctggaaatattcctgccagcatcaccaaacttggaaatctttctcatttggatcttgctagcaatagtatatcaggtcccctgcctcagtatttggcaaatttgacaggaatggttccgaagcaatattatacgaacgagcatgaagagagactatctggatgtgactacaaatctcttgtgaccatgaaggggctggaacttgagtatgatgaagaaaatgtaactgtggtgaccattgatttgtcctcaaatcttttgaccggtgtgattcctgaagacattacttatcttcatagattgataaatctgaatctatcgagtaactatttgagtggaaaaattccatattcgattgggaacatgcagtcattggaatcgctcgacctctcgaagaacatgctctatggtgaaatcccacaaagtttgtctgatttatcgtctttaagttttctgaacctatcttataacaatcttgtgggaggaataccatcagggacacaacttggcaccctctatgatcaaaaccatcatctgtatgatggcaatgatggtctttgtgggcctcctctccaaaaaagctgttataaaagcgatgcatcagagcaaggtcacctgatgagaagtaaacaaggttttgacatagggccattttccattggagttgtgatgggatttatggcaggtctctggattgtcttctatgcccttttgttcaggaaatcttggagggttgcttacttctgtctcttggacaaggtgtatgatgaggtttgtgtgattgcggttgttggttgggcaagattgacaggaagaacagatccgagattgctgatgtcgcatgtctcatggtcatccatcgactctgacgaatcctatgaatagatgaagatgaaaaagctgaagcaggtgtaagactattagttgggttgtatattttgtcatgtatggagcttattagagcaagtaccctaaatgcatatgatgcatagatctacaatgatgtgtatatatctgtttgtactggtacagttgtgtagtgtgtcagaaatcacccttcagact
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| CDS seq | atgctcatgcgtcatccgaccatcgccgccgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggcggtcagctgcaggaggattgctgccaatggcgaggcgtccggtgcagcaaccgcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtacctcgatctcagcatgaacaaccttgcaggttccactggacatgtccctgagttcttgggctctttcagaagcctgagatatctgaatctatctgggatagtgttctccggcatggtgccgcctcagctcggtaacctttcgaacttgcgatatctcgatctctccaggataagattatccggcatggttccatttctgtacattaatgatggttcatggttagcacacttgtccaatttgcaatatctgaaacttgatggggtaaaccttagcacagtagttgattggccacatgttctgaacatgatcccttctctgaagattgttagcctttcttcttgctcacttcagagtgcaaaccagtctctcccagagcttagtttcaaggaacttgagatgcttgatctttccaacaatgattttaaccacccagctgagtctagttggatttggaacctgacatctctcaagcatctcaatcttagctcgactagtttgtacggtgatattccgcaagcgctaggaaacatgctgtccctccaagttcttgatttctcatttgatgatcataaggatagcatgggcatgagcgtgtcgaaaaatggcaagatgggcaccatgaaagcaaacttgaagaatctatgcaatttggaagttctagacctcgattgtaggctagaatatggaaatattatggatatatttcagagtttgccacagtgttcacccagcaaactgaaggaagttcatttggctggcaacagtttaaccgggatgctaccaaattggattggaaggctaacaagcttagtcactcttgacctcttcaataacagcatcactggacaggtgccttctgaaataggcataaatgatacattcccagactggttctctacaaccttttcaaaggccaagttgttggaatttcccggtaatcaaatcagtggtggattgccaacaaatatggaaaacatgtcattggaaaaattatatctgaaatcgaaccaaatagcgggtctgattcctcgcatgccgcgaaacctcactacattagatttatcaaacaactcattgtcaggacctctgccactaaatattggatctccaaaactagctgagttgaatctgttatccaaccgtatcaccgggaatgttccacaatctatttgtgaactgcagaatttacatggcctagacttatccaacaatctacttgacggagagtttcctcaatgttctgggatgagcatgatgtcattttttcgtctgagtaacaacagcttttctggcaacttcccatcttttcttcagggttggacagagttaagcttccttgatctttcatggaataagttctctgggaatttgcctacatggattggaaatttcagcaagctagaaattctgcggcttaagcataacatgttctctggaaatattcctgccagcatcaccaaacttggaaatctttctcatttggatcttgctagcaatagtatatcaggtcccctgcctcagtatttggcaaatttgacaggaatggttccgaagcaatattatacgaacgagcatgaagagagactatctggatgtgactacaaatctcttgtgaccatgaaggggctggaacttgagtatgatgaagaaaatgtaactgtggtgaccattgatttgtcctcaaatcttttgaccggtgtgattcctgaagacattacttatcttcatagattgataaatctgaatctatcgagtaactatttgagtggaaaaattccatattcgattgggaacatgcagtcattggaatcgctcgacctctcgaagaacatgctctatggtgaaatcccacaaagtttgtctgatttatcgtctttaagttttctgaacctatcttataacaatcttgtgggaggaataccatcagggacacaacttggcaccctctatgatcaaaaccatcatctgtatgatggcaatgatggtctttgtgggcctcctctccaaaaaagctgttataaaagcgatgcatcagagcaaggtcacctgatgagaagtaaacaaggttttgacatagggccattttccattggagttgtgatgggatttatggcaggtctctggattgtcttctatgcccttttgttcaggaaatcttggagggttgcttacttctgtctcttggacaaggtgtatgatgaggtttgtgtgattgcggttgttggttgggcaagattgacaggaagaacagatccgagattgctgatgtcgcatgtctcatggtcatccatcgactctgacgaatcctatgaatag
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| Protein seq | MLMRHPTIAAAAAAAASFLLLMIAADGQAATTTPPSPPPAAIGNYCKPRERDALLAFKEGVTDDPAGLLASWRRGGGQLQEDCCQWRGVRCSNRTGHVVKLRLRNDHAGTALAGEIGQSLISLEHLRYLDLSMNNLAGSTGHVPEFLGSFRSLRYLNLSGIVFSGMVPPQLGNLSNLRYLDLSRIRLSGMVPFLYINDGSWLAHLSNLQYLKLDGVNLSTVVDWPHVLNMIPSLKIVSLSSCSLQSANQSLPELSFKELEMLDLSNNDFNHPAESSWIWNLTSLKHLNLSSTSLYGDIPQALGNMLSLQVLDFSFDDHKDSMGMSVSKNGKMGTMKANLKNLCNLEVLDLDCRLEYGNIMDIFQSLPQCSPSKLKEVHLAGNSLTGMLPNWIGRLTSLVTLDLFNNSITGQVPSEIGINDTFPDWFSTTFSKAKLLEFPGNQISGGLPTNMENMSLEKLYLKSNQIAGLIPRMPRNLTTLDLSNNSLSGPLPLNIGSPKLAELNLLSNRITGNVPQSICELQNLHGLDLSNNLLDGEFPQCSGMSMMSFFRLSNNSFSGNFPSFLQGWTELSFLDLSWNKFSGNLPTWIGNFSKLEILRLKHNMFSGNIPASITKLGNLSHLDLASNSISGPLPQYLANLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEYDEENVTVVTIDLSSNLLTGVIPEDITYLHRLINLNLSSNYLSGKIPYSIGNMQSLESLDLSKNMLYGEIPQSLSDLSSLSFLNLSYNNLVGGIPSGTQLGTLYDQNHHLYDGNDGLCGPPLQKSCYKSDASEQGHLMRSKQGFDIGPFSIGVVMGFMAGLWIVFYALLFRKSWRVAYFCLLDKVYDEVCVIAVVGWARLTGRTDPRLLMSHVSWSSIDSDESYE |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0017400 | OsCMeo_11g0017400.01 | Chr11 | 20433448 | 20436504 | + | NAM | ||
| CDS seq | atgctcatgcgtcatccgaccatcgccgccgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggcggtcagctgcaggaggattgctgccaatggcgaggcgtccggtgcagcaaccgcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtacctcgatctcagcatgaacaaccttgcaggttccactggacatgtccctgagttcttgggctctttcagaagcctgagatatctgaatctatctgggatagtgttctccggcatggtgccgcctcagctcggtaacctttcgaacttgcgatatctcgatctctccaggataagattatccggcatggttccatttctgtacattaatgatggttcatggttagcacacttgtccaatttgcaatatctgaaacttgatggggtaaaccttagcacagtagttgattggccacatgttctgaacatgatcccttctctgaagattgttagcctttcttcttgctcacttcagagtgcaaaccagtctctcccagagcttagtttcaaggaacttgagatgcttgatctttccaacaatgattttaaccacccagctgagtctagttggatttggaacctgacatctctcaagcatctcaatcttagctcgactagtttgtacggtgatattccgcaagcgctaggaaacatgctgtccctccaagttcttgatttctcatttgatgatcataaggatagcatgggcatgagcgtgtcgaaaaatggcaagatgggcaccatgaaagcaaacttgaagaatctatgcaatttggaagttctagacctcgattgtaggctagaatatggaaatattatggatatatttcagagtttgccacagtgttcacccagcaaactgaaggaagttcatttggctggcaacagtttaaccgggatgctaccaaattggattggaaggctaacaagcttagtcactcttgacctcttcaataacagcatcactggacaggtgccttctgaaataggcataaatgatacattcccagactggttctctacaaccttttcaaaggccaagttgttggaatttcccggtaatcaaatcagtggtggattgccaacaaatatggaaaacatgtcattggaaaaattatatctgaaatcgaaccaaatagcgggtctgattcctcgcatgccgcgaaacctcactacattagatttatcaaacaactcattgtcaggacctctgccactaaatattggatctccaaaactagctgagttgaatctgttatccaaccgtatcaccgggaatgttccacaatctatttgtgaactgcagaatttacatggcctagacttatccaacaatctacttgacggagagtttcctcaatgttctgggatgagcatgatgtcattttttcgtctgagtaacaacagcttttctggcaacttcccatcttttcttcagggttggacagagttaagcttccttgatctttcatggaataagttctctgggaatttgcctacatggattggaaatttcagcaagctagaaattctgcggcttaagcataacatgttctctggaaatattcctgccagcatcaccaaacttggaaatctttctcatttggatcttgctagcaatagtatatcaggtcccctgcctcagtatttggcaaatttgacaggaatggttccgaagcaatattatacgaacgagcatgaagagagactatctggatgtgactacaaatctcttgtgaccatgaaggggctggaacttgagtatgatgaagaaaatgtaactgtggtgaccattgatttgtcctcaaatcttttgaccggtgtgattcctgaagacattacttatcttcatagattgataaatctgaatctatcgagtaactatttgagtggaaaaattccatattcgattgggaacatgcagtcattggaatcgctcgacctctcgaagaacatgctctatggtgaaatcccacaaagtttgtctgatttatcgtctttaagttttctgaacctatcttataacaatcttgtgggaggaataccatcagggacacaacttggcaccctctatgatcaaaaccatcatctgtatgatggcaatgatggtctttgtgggcctcctctccaaaaaagctgttataaaagcgatgcatcagagcaaggtcacctgatgagaagtaaacaaggttttgacatagggccattttccattggagttgtgatgggatttatggcaggtctctggattgtcttctatgcccttttgttcaggaaatcttggagggttgcttacttctgtctcttggacaaggtgtatgatgaggtttgtgtgattgcggttgttggttgggcaagattgacaggaagaacagatccgagattgctgatgtcgcatgtctcatggtcatccatcgactctgacgaatcctatgaatag
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| Protein seq | MLMRHPTIAAAAAAAASFLLLMIAADGQAATTTPPSPPPAAIGNYCKPRERDALLAFKEGVTDDPAGLLASWRRGGGQLQEDCCQWRGVRCSNRTGHVVKLRLRNDHAGTALAGEIGQSLISLEHLRYLDLSMNNLAGSTGHVPEFLGSFRSLRYLNLSGIVFSGMVPPQLGNLSNLRYLDLSRIRLSGMVPFLYINDGSWLAHLSNLQYLKLDGVNLSTVVDWPHVLNMIPSLKIVSLSSCSLQSANQSLPELSFKELEMLDLSNNDFNHPAESSWIWNLTSLKHLNLSSTSLYGDIPQALGNMLSLQVLDFSFDDHKDSMGMSVSKNGKMGTMKANLKNLCNLEVLDLDCRLEYGNIMDIFQSLPQCSPSKLKEVHLAGNSLTGMLPNWIGRLTSLVTLDLFNNSITGQVPSEIGINDTFPDWFSTTFSKAKLLEFPGNQISGGLPTNMENMSLEKLYLKSNQIAGLIPRMPRNLTTLDLSNNSLSGPLPLNIGSPKLAELNLLSNRITGNVPQSICELQNLHGLDLSNNLLDGEFPQCSGMSMMSFFRLSNNSFSGNFPSFLQGWTELSFLDLSWNKFSGNLPTWIGNFSKLEILRLKHNMFSGNIPASITKLGNLSHLDLASNSISGPLPQYLANLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEYDEENVTVVTIDLSSNLLTGVIPEDITYLHRLINLNLSSNYLSGKIPYSIGNMQSLESLDLSKNMLYGEIPQSLSDLSSLSFLNLSYNNLVGGIPSGTQLGTLYDQNHHLYDGNDGLCGPPLQKSCYKSDASEQGHLMRSKQGFDIGPFSIGVVMGFMAGLWIVFYALLFRKSWRVAYFCLLDKVYDEVCVIAVVGWARLTGRTDPRLLMSHVSWSSIDSDESYE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0017400 | OsCMeo_11g0017400.02 | Chr11 | 20433487 | 20436684 | + | IsoSeq | ||
| CDS seq | accaaaacacacagtgaaccagcatctcacactgcagctaatcaatcacttagccatgctcatgcgtcatccgaccatcgccgccgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggcggtcagctgcaggaggattgctgccaatggcgaggcgtccggtgcagcaaccgcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtacctcgatctcagcatgaacaaccttgcaggttccactggacatgt
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| Protein seq | TKTHSEPASHTAANQSLSHAHASSDHRRRRRRRRLLPPPHDRRRWPGGDDDTAITTTCSHRQLLQTARERRAAGVQGRRHRRPCRPPRLLATRWRSAAGGLLPMARRPVQQPHRPCRQAPPPQRPRRNSAGRRDRPVSDLAGASQVPRSQHEQPCRFHWTC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.697142 | 1.189766 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0561100 | SBH | 0.0 | 0.0 | 0.049136 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35450 | SBH | 0.0 | 0.0 | 0.129496 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0561100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017460 | SBH | 0.0 | 0.000000 | 0.367034 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017520 | RBH | 0.0 | 0.339675 | 0.387616 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017500 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017020 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017400 | RBH | 0.0 | 1.300605 | 0.425899 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0328500 | SBH | 0.087558 | 0.007805 | 0.0092835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017810 | RBH | 0.0 | 0.000000 | 0.057733 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0338300 | SBH | 0.0967465 | 0.6191675 | 0.02752 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017870 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0072240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017180 | RBH | 0.000000 | 0.278856 | 0.430150 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017520 | SBH | 0.0 | 1.115664 | 0.259305 |
