Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0017230 | OGI:11010520 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:22753296-22754642 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agctaatcaatcacttagccatgctcatgcgtcatccgaccatcgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggtggtcagctgcaggacgattgctgccaatggcgaggcgtccggtgcagcaacctcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtaccttgatctcagcatgaacaaccttgcaggttccactggacatgtccctgagttcttgggctctttcagaagcctgagatatctgaatctatctgggatagtgttctccggcatggtgccgcctcagctcggtaacctttcgaacttgcgatatctcgatctttctgggataagattatctggcatggtttcatttctgtacattaatgatggttcatggttagcacacttgtccaatttgcaatatctgaaccttgatggggtaaaccttagcacagtagttgattggccacatgttctgaacatgatcccttctctgaagattgttagcctttcttcttgctcacttcagagtgcaaaccagtctctcccagagcttagtttcaaggaactcgagaagcttgatctttccaacaatgactttaaccacccagctgaatctagttggatttggaacttgacatctctcaagtatctcaatcttagctcgactagtttgtacggtgatattccgaaagcgctaggaaacatgctgtccctccaagttcttgatttctcatttgatgatcataaggatagcatgggcatgagcgtgtcgaaaaatggcaatatgggcaccatgaaagcaaacttgaagaatctatgcaatttggaagttctagaccttgattgtaggctagaatatggaaacattacggatatatttcagagtttaccacagtgttcacccagcaaactgaaggaagttcatttggctggcaacagtttaaccgggatgctaccaaattggattggaaggctaacaagcttagtcactcttgacctcttcaataatagcattactggacaggtgccttctgaaataggtatgctcacaaatctgaggaatttgtacctacatttcaataacatgaatggtaccatcacagagaagcactttgcgcacctga
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| CDS seq | atgctcatgcgtcatccgaccatcgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggtggtcagctgcaggacgattgctgccaatggcgaggcgtccggtgcagcaacctcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtaccttgatctcagcatgaacaaccttgcaggttccactggacatgtccctgagttcttgggctctttcagaagcctgagatatctgaatctatctgggatagtgttctccggcatggtgccgcctcagctcggtaacctttcgaacttgcgatatctcgatctttctgggataagattatctggcatggtttcatttctgtacattaatgatggttcatggttagcacacttgtccaatttgcaatatctgaaccttgatggggtaaaccttagcacagtagttgattggccacatgttctgaacatgatcccttctctgaagattgttagcctttcttcttgctcacttcagagtgcaaaccagtctctcccagagcttagtttcaaggaactcgagaagcttgatctttccaacaatgactttaaccacccagctgaatctagttggatttggaacttgacatctctcaagtatctcaatcttagctcgactagtttgtacggtgatattccgaaagcgctaggaaacatgctgtccctccaagttcttgatttctcatttgatgatcataaggatagcatgggcatgagcgtgtcgaaaaatggcaatatgggcaccatgaaagcaaacttgaagaatctatgcaatttggaagttctagaccttgattgtaggctagaatatggaaacattacggatatatttcagagtttaccacagtgttcacccagcaaactgaaggaagttcatttggctggcaacagtttaaccgggatgctaccaaattggattggaaggctaacaagcttagtcactcttgacctcttcaataatagcattactggacagagaagcactttgcgcacctga
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| Protein seq | MLMRHPTIAAAAAASFLLLMIAADGQAATTTPPSPPPAAIGNYCKPRERDALLAFKEGVTDDPAGLLASWRRGGGQLQDDCCQWRGVRCSNLTGHVVKLRLRNDHAGTALAGEIGQSLISLEHLRYLDLSMNNLAGSTGHVPEFLGSFRSLRYLNLSGIVFSGMVPPQLGNLSNLRYLDLSGIRLSGMVSFLYINDGSWLAHLSNLQYLNLDGVNLSTVVDWPHVLNMIPSLKIVSLSSCSLQSANQSLPELSFKELEKLDLSNNDFNHPAESSWIWNLTSLKYLNLSSTSLYGDIPKALGNMLSLQVLDFSFDDHKDSMGMSVSKNGNMGTMKANLKNLCNLEVLDLDCRLEYGNITDIFQSLPQCSPSKLKEVHLAGNSLTGMLPNWIGRLTSLVTLDLFNNSITGQRSTLRT |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0017230 | OsLaMu_11g0017230.01 | Chr11 | 22753296 | 22754642 | + | NAM | ||
| CDS seq | atgctcatgcgtcatccgaccatcgccgccgccgccgccgcctccttcctcctcctcatgatcgccgccgatggccaggcggcgacgacgacaccgccatcaccaccacctgcagccatcggcaactactgcaaaccgcgcgagagagacgcgctgctggcgttcaaggaaggcgtcaccgacgaccctgcaggcctcctcgcctcttggcgacgaggtggtggtcagctgcaggacgattgctgccaatggcgaggcgtccggtgcagcaacctcaccggccatgtcgtcaagctccgcctccgcaacgaccacgccggaacagcgctggccggcgagataggccagtctctgatctcgctggagcatctcaggtaccttgatctcagcatgaacaaccttgcaggttccactggacatgtccctgagttcttgggctctttcagaagcctgagatatctgaatctatctgggatagtgttctccggcatggtgccgcctcagctcggtaacctttcgaacttgcgatatctcgatctttctgggataagattatctggcatggtttcatttctgtacattaatgatggttcatggttagcacacttgtccaatttgcaatatctgaaccttgatggggtaaaccttagcacagtagttgattggccacatgttctgaacatgatcccttctctgaagattgttagcctttcttcttgctcacttcagagtgcaaaccagtctctcccagagcttagtttcaaggaactcgagaagcttgatctttccaacaatgactttaaccacccagctgaatctagttggatttggaacttgacatctctcaagtatctcaatcttagctcgactagtttgtacggtgatattccgaaagcgctaggaaacatgctgtccctccaagttcttgatttctcatttgatgatcataaggatagcatgggcatgagcgtgtcgaaaaatggcaatatgggcaccatgaaagcaaacttgaagaatctatgcaatttggaagttctagaccttgattgtaggctagaatatggaaacattacggatatatttcagagtttaccacagtgttcacccagcaaactgaaggaagttcatttggctggcaacagtttaaccgggatgctaccaaattggattggaaggctaacaagcttagtcactcttgacctcttcaataatagcattactggacagagaagcactttgcgcacctga
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| Protein seq | MLMRHPTIAAAAAASFLLLMIAADGQAATTTPPSPPPAAIGNYCKPRERDALLAFKEGVTDDPAGLLASWRRGGGQLQDDCCQWRGVRCSNLTGHVVKLRLRNDHAGTALAGEIGQSLISLEHLRYLDLSMNNLAGSTGHVPEFLGSFRSLRYLNLSGIVFSGMVPPQLGNLSNLRYLDLSGIRLSGMVSFLYINDGSWLAHLSNLQYLNLDGVNLSTVVDWPHVLNMIPSLKIVSLSSCSLQSANQSLPELSFKELEKLDLSNNDFNHPAESSWIWNLTSLKYLNLSSTSLYGDIPKALGNMLSLQVLDFSFDDHKDSMGMSVSKNGNMGTMKANLKNLCNLEVLDLDCRLEYGNITDIFQSLPQCSPSKLKEVHLAGNSLTGMLPNWIGRLTSLVTLDLFNNSITGQRSTLRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0561100 | SBH | 0.0 | 0.0 | 0.049136 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35660 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0561100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017460 | RBH | 0.0 | 0.000000 | 0.367034 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017400 | RBH | 0.0 | 0.697142 | 1.189766 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017120 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017400 | RBH | 0.0 | 1.300605 | 0.425899 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0326900 | RBH | 0.005189 | 1.363032 | 0.006582 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017810 | RBH | 0.0 | 0.000000 | 0.057733 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0338300 | RBH | 0.0967465 | 0.6191675 | 0.02752 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017720 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017270 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017520 | RBH | 0.0 | 1.115664 | 0.259305 |
