Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017790 | OGI:11010520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:22995889-23000131 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcatcctgcagcttccaagctcatgctgcttgtcgtggctgccgccgcagctgctgcttgcagcttctccccgccggcggcggccacagccggcggcgccaccaatgcactagagcagcagctccggccggatgatgctggcacgagctgcttgccgcatgagagggacgcgctgctggccttcaagcaaggcatcaccctcgactactacggcttcctctcgtcatggcgacgagggcaggaagaagaagaagactgctgccggtggagaggcgtcacgtgcagcaaccgaacaggccacgtcatcaagcttgatctcagcatcccttcttctttcttcccctggagaggtttagaaggccaaataataagtccttctcttctttccctcgagcaactggagtccctcgatctcagcgggaattggttcaataatggctctatcccaacttttctgggttgtttcaagaatttgagatatctgaatctctcgcacacgtctttcactggtacattttctcatcagcttagcaacctcttcaaaagttggaatatcttgagttcttgatctcacccacacacattttactgctttgcaggtgaagtgccccatcaacttggcaacctttcaaacttgcgacaccttgaccttgctggttcttccccgtcagatatgcatgcgacaaatatctcttggttagctcatctgcatttccttgaatatctcgacatgagtcttattaatctaagcatggcggtagattggccttccgtcatcagcactattacatctctgcagtccctccatctttcaagctgctcgcttccaggcacaagccaatccatgacacaactaaacctcacaagacttgtggagcttgatgtttcatctaacgactttggcaatccacttggtacaagtagtgtcctagagttcttggattcaatggagaacataagatatcttgaccttactaggacatcgatattgtcaggtagagtgccacctcagcttggtaacctttcaaccctgagacacctTGGTCTCGGTTTCATGCCAAATATGTACTCAACTGATATCTCGTGGTTAACCCATCTTCAACAGCTTGAGTACCTTCACATGGGCGGAATAAATCTCAGCACAATAACTGATTGGCCTCTTGTGGTGAACATGATTCCATCTCTCAAGGTCCTCTACCTTATGGAGTGTTCACTTCAAAGTGCAAACCAATCGCTTGAACGCTTAAACTTAACCAAACTTGAAGATCTCGATCTCTCACAGAACTATTTTGGTCATCCAAattgcatcttgctggttttggaaggaaacaaacatcaagcatctttcccttgacgaaacctatcttcatggtccattcccagatgcattaggtgaaatgacgtccctccaagacctatattttgatagaaatggcaacttagccacaatgacagtggatttgaaaaacctttgtgcattgggagtactagcacttgatggcagtctctctcatggaaacatcacggagtttatagataaattgccaaaatgttcttctggcagtttcaccatcttggatttggccaacaataatatgactggagtgctgccgactaccatggagcacttgactagcctagaaagtcttgtacttttgaacaacagcataagtggacctataccaccagggattctgaatttgacaagtttgcggtccatctttctagctctcaatcgactaaatggccatataccattgatatcgAaaaatcttcagaatttggacattgctatgaacaacttgtcaggacatttgccagttgaatttggagctccagatctcgaagtgatcgttctatcctccaatcgctttactggtcatgttcctagatctatttctaagttgcaaaagttgcgtttcttggatttgtcaaataattatttttatggagaacttcccaggatgccaaacttactgtacctgctcttaagtaacaacagattttcggggaagttcccattatggctccaaagcttctcagcattggctttactagatctttcatggaacaacttggatggaacattaccaatatggattggcgatttagctGgtttgacatttctacagctaagccataacaagttctatggagatattccactcaatatcacaaatcttacaaaacttcaacttctgaatttagcaggcaacaacttatcaggaacaattcctcagcgtttgtcaaatttaattggaatgaccttaaaacatcggaaaagacttggtacagagtggtacgagtctgaggtgggtgatgtgttcctaggggtggatgatgtgttcctagatatgttgtctgtggtgataaagcatcaagaactcaagtATCatcctgatggtgcttttcagatggttggcattgacttgtcactaaaccacttaacaggtttgattccagacggaataacttctctcaatggattggagaatttaaatttatcatggaatcagttgagcgggagaattccagataatattggggccctaaaatcattagaatcatttgatttctcaaggaacaatctttctggtgaaatcccaccaagcttatcagacctgacatatttaagctccttggacctctcatataacaatcttgtaggaagaataccgcGgggacgccaactcgacacactctatgataatgacccatccatgtatgatggaaacagtggtctatgcggacctcctcttcgaaggaattgttcaggtaataatgcaacgcagcatgacagtcgaaaaagaagtatgagagatttagagccaaggttgttcttttattttggactcgtgtcaggatttgtggttggcctttgggtggttttctgtgctatactattcaaaagatcatggagagttgcttatttccgtaagtttgacaagttatatgataaagcatatgtgtttgtggttgttacatgggctaggtttgctagtcaggcaactagaaattaaatatccaagtcatatgctggttcgtctgctgttacacgaaatgaataaatgaaggagaagcattcaaaaactctgttagtctgtataattattttgttttcgtgtcggtgatgtgaaaataaatgttctctaatgcttaattgattttcttctgacgacctttagtacatgggatgtagtatacaaaaatccagcaccagtacattgagtgaaagcactccatttcccaaacctcccatggtttctgaaatcagaatgatgatttgagctcgtctgttgctcaattctgctcctctagtttcatctcaactgttttcaataaacggataacaggtttatctaaaatggaacagtttccgtatctgtttgtactgtttcttttctgcatattcaaatcacattgttcctgagatatcctctgttgacatggcacacttacacaattcatggatttcatccattccactgctataaatcaattgaggcgaagcagcatgcctgccccatggcaaggccgagttctttacgattcaccctcgatcgccatcatcgtgacatggttcgatcgaaatgactcaattctctgaagatactctatacttcctcttgggcaaagctactgaaggaaggaagttcagaaatggagattcagagttaactgaagaaaaaattattcagagcagggttggtggaatagagtaagacataccggttcaccgaattcacctaagtcgaatccgatggtccagatcatggcctcaagtgcCAcaccaaatccaacggctcgtaagcattaaggctgtgatacactgttgttaatcatgtaattagcgatttaaacgccagtacacttcgatccccttttccttccctgtggctgcgCTccccacggtgcggtggtggaggggaaagccatcgatctcgcctcgcctatcctccaattacttcattggtcatattcctgaatctatttgtgaattgcatggcttgcttgcattcgaTttatccaacaatcttttggatggagaacttcatgagagttttcaaatgcccaagatggttttcctacttttgagtaacaacaacttttctgggaagttcccatcatcactgcaaagcagctcgacattggtctttctagatcttgcatggaacaagttctacggaacattaccatcatggattggagacttggtgaacctacgattttttggagcttag
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| CDS seq | atgcatcctgcagcttccaagctcatgctgcttgtcgtggctgccgccgcagctgctgcttgcagcttctccccgccggcggcggccacagccggcggcgccaccaatgcactagagcagcagctccggccggatgatgctggcacgagctgcttgccgcatgagagggacgcgctgctggccttcaagcaaggcatcaccctcgactactacggcttcctctcgtcatggcgacgagggcaggaagaagaagaagactgctgccggtggagaggcgtcacgtgcagcaaccgaacaggccacgtcatcaagcttgatctcagcatcccttcttctttcttcccctggagagatatgcatgcgacaaatatctcttggttagctcatctgcatttccttgaatatctcgacatgagtcttattaatctaagcatggcggtagattggccttccgtcatcagcactattacatctctgcagtccctccatctttcaagctgctcgcttccaggcacaagccaatccatgacacaactaaacctcacaagacttgtggagcttgatgtttcatctaacgactttggcaatccacttggtacaagtagtgtcctagagttcttggattcaatggagaacataagatatcttgaccttactaggacatcgatattgtcaggtagagtgccacctcagcttggtaacctttcaaccctgagacacctTGGTCTCGGTTTCATGCCAAATATGTACTCAACTGATATCTCGTGGTTAACCCATCTTCAACAGCTTGAGTACCTTCACATGGGCGGAATAAATCTCAGCACAATAACTGATTGGCCTCTTGTGGTGAACATGATTCCATCTCTCAAGgaaacaaacatcaagcatctttcccttgacgaaacctatcttcatggtccattcccagatgcattaggtgaaatgacgtccctccaagacctatattttgatagaaatggcaacttagccacaatgacagtggatttgaaaaacctttgtgcattgggagtactagcacttgatggcagtctctctcatggaaacatcacggagtttatagataaattgccaaaatgttcttctggcagtttcaccatcttggatttggccaacaataatatgactggagtgctgccgactaccatggagcacttgactagcctagaaagtcttgtacttttgaacaacagcataagtggacctataccaccagggattctgaatttgacaagtttgcggtccatctttctagctctcaatcgactaaatggccatataccattgatatcgAaaaatcttcagaatttggacattgctatgaacaacttgtcaggacatttgccagttgaatttggagctccagatctcgaagtgatcgttctatcctccaatcgctttactggtcatgttcctagatctatttctaagttgcaaaagttgcgtttcttggatttgtcaaataattatttttatggagaacttcccaggatgccaaacttactgtacctgctcttaagtaacaacagattttcggggaagttcccattatggctccaaagcttctcagcattggctttactagatctttcatggaacaacttggatggaacattaccaatatggattggcgatttagctGgtttgacatttctacagctaagccataacaagttctatggagatattccactcaatatcacaaatcttacaaaacttcaacttctgaatttagcaggcaacaacttatcaggaacaattcctcagcgtttgtcaaatttaattggaatgaccttaaaacatcggaaaagacttggtacagagtggtacgagtctgaggtgggtgatgtgttcctaggggtggatgatgtgttcctagatatgttgtctgtggtgataaagcatcaagaactcaagtATCatcctgatggtgcttttcagatggttggcattgacttgtcactaaaccacttaacaggtttgattccagacggaataacttctctcaatggattggagaatttaaatttatcatggaatcagttgagcgggagaattccagataatattggggccctaaaatcattagaatcatttgatttctcaaggaacaatctttctggtgaaatcccaccaagcttatcagacctgacatatttaagctccttggacctctcatataacaatcttgtaggaagaataccgcGgggacgccaactcgacacactctatgataatgacccatccatgtatgatggaaacagtggtctatgcggacctcctcttcgaaggaattgttcaggtttgctagtcaggcaactagaaattaaatatccaagtcatatgctgcgatttaaacgccagtacacttcgatccccttttccttccctgtggctgcgCTccccacggtgcggtggtggaggggaaagccatcgatctcgcctcgcctatcctccaattacttcattggtcatattcctgaatctatttgtgaattgcatggcttgcttgcattcgaTttatccaacaatcttttggatggagaacttcatgagagttttcaaatgcccaagatggttttcctacttttgagtaacaacaacttttctgggaagttcccatcatcactgcaaagcagctcgacattggtctttctagatcttgcatggaacaagttctacggaacattaccatcatggattggagacttggtgaacctacgattttttggagcttag
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| Protein seq | MHPAASKLMLLVVAAAAAAACSFSPPAAATAGGATNALEQQLRPDDAGTSCLPHERDALLAFKQGITLDYYGFLSSWRRGQEEEEDCCRWRGVTCSNRTGHVIKLDLSIPSSFFPWRDMHATNISWLAHLHFLEYLDMSLINLSMAVDWPSVISTITSLQSLHLSSCSLPGTSQSMTQLNLTRLVELDVSSNDFGNPLGTSSVLEFLDSMENIRYLDLTRTSILSGRVPPQLGNLSTLRHLGLGFMPNMYSTDISWLTHLQQLEYLHMGGINLSTITDWPLVVNMIPSLKETNIKHLSLDETYLHGPFPDALGEMTSLQDLYFDRNGNLATMTVDLKNLCALGVLALDGSLSHGNITEFIDKLPKCSSGSFTILDLANNNMTGVLPTTMEHLTSLESLVLLNNSISGPIPPGILNLTSLRSIFLALNRLNGHIPLISKNLQNLDIAMNNLSGHLPVEFGAPDLEVIVLSSNRFTGHVPRSISKLQKLRFLDLSNNYFYGELPRMPNLLYLLLSNNRFSGKFPLWLQSFSALALLDLSWNNLDGTLPIWIGDLAGLTFLQLSHNKFYGDIPLNITNLTKLQLLNLAGNNLSGTIPQRLSNLIGMTLKHRKRLGTEWYESEVGDVFLGVDDVFLDMLSVVIKHQELKYHPDGAFQMVGIDLSLNHLTGLIPDGITSLNGLENLNLSWNQLSGRIPDNIGALKSLESFDFSRNNLSGEIPPSLSDLTYLSSLDLSYNNLVGRIPRGRQLDTLYDNDPSMYDGNSGLCGPPLRRNCSGLLVRQLEIKYPSHMLRFKRQYTSIPFSFPVAALPTVRWWRGKPSISPRLSSNYFIGHIPESICELHGLLAFDLSNNLLDGELHESFQMPKMVFLLLSNNNFSGKFPSSLQSSSTLVFLDLAWNKFYGTLPSWIGDLVNLRFFGA |
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| Function | Probable inactive leucine-rich repeat receptor kinase XIAO [UniProtKB/Swiss-Prot:G9LZD7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017790 | OsLima_11g0017790.01 | Chr11 | 22995889 | 23000131 | + | NAM | ||
| CDS seq | atgcatcctgcagcttccaagctcatgctgcttgtcgtggctgccgccgcagctgctgcttgcagcttctccccgccggcggcggccacagccggcggcgccaccaatgcactagagcagcagctccggccggatgatgctggcacgagctgcttgccgcatgagagggacgcgctgctggccttcaagcaaggcatcaccctcgactactacggcttcctctcgtcatggcgacgagggcaggaagaagaagaagactgctgccggtggagaggcgtcacgtgcagcaaccgaacaggccacgtcatcaagcttgatctcagcatcccttcttctttcttcccctggagagatatgcatgcgacaaatatctcttggttagctcatctgcatttccttgaatatctcgacatgagtcttattaatctaagcatggcggtagattggccttccgtcatcagcactattacatctctgcagtccctccatctttcaagctgctcgcttccaggcacaagccaatccatgacacaactaaacctcacaagacttgtggagcttgatgtttcatctaacgactttggcaatccacttggtacaagtagtgtcctagagttcttggattcaatggagaacataagatatcttgaccttactaggacatcgatattgtcaggtagagtgccacctcagcttggtaacctttcaaccctgagacacctTGGTCTCGGTTTCATGCCAAATATGTACTCAACTGATATCTCGTGGTTAACCCATCTTCAACAGCTTGAGTACCTTCACATGGGCGGAATAAATCTCAGCACAATAACTGATTGGCCTCTTGTGGTGAACATGATTCCATCTCTCAAGgaaacaaacatcaagcatctttcccttgacgaaacctatcttcatggtccattcccagatgcattaggtgaaatgacgtccctccaagacctatattttgatagaaatggcaacttagccacaatgacagtggatttgaaaaacctttgtgcattgggagtactagcacttgatggcagtctctctcatggaaacatcacggagtttatagataaattgccaaaatgttcttctggcagtttcaccatcttggatttggccaacaataatatgactggagtgctgccgactaccatggagcacttgactagcctagaaagtcttgtacttttgaacaacagcataagtggacctataccaccagggattctgaatttgacaagtttgcggtccatctttctagctctcaatcgactaaatggccatataccattgatatcgAaaaatcttcagaatttggacattgctatgaacaacttgtcaggacatttgccagttgaatttggagctccagatctcgaagtgatcgttctatcctccaatcgctttactggtcatgttcctagatctatttctaagttgcaaaagttgcgtttcttggatttgtcaaataattatttttatggagaacttcccaggatgccaaacttactgtacctgctcttaagtaacaacagattttcggggaagttcccattatggctccaaagcttctcagcattggctttactagatctttcatggaacaacttggatggaacattaccaatatggattggcgatttagctGgtttgacatttctacagctaagccataacaagttctatggagatattccactcaatatcacaaatcttacaaaacttcaacttctgaatttagcaggcaacaacttatcaggaacaattcctcagcgtttgtcaaatttaattggaatgaccttaaaacatcggaaaagacttggtacagagtggtacgagtctgaggtgggtgatgtgttcctaggggtggatgatgtgttcctagatatgttgtctgtggtgataaagcatcaagaactcaagtATCatcctgatggtgcttttcagatggttggcattgacttgtcactaaaccacttaacaggtttgattccagacggaataacttctctcaatggattggagaatttaaatttatcatggaatcagttgagcgggagaattccagataatattggggccctaaaatcattagaatcatttgatttctcaaggaacaatctttctggtgaaatcccaccaagcttatcagacctgacatatttaagctccttggacctctcatataacaatcttgtaggaagaataccgcGgggacgccaactcgacacactctatgataatgacccatccatgtatgatggaaacagtggtctatgcggacctcctcttcgaaggaattgttcaggtttgctagtcaggcaactagaaattaaatatccaagtcatatgctgcgatttaaacgccagtacacttcgatccccttttccttccctgtggctgcgCTccccacggtgcggtggtggaggggaaagccatcgatctcgcctcgcctatcctccaattacttcattggtcatattcctgaatctatttgtgaattgcatggcttgcttgcattcgaTttatccaacaatcttttggatggagaacttcatgagagttttcaaatgcccaagatggttttcctacttttgagtaacaacaacttttctgggaagttcccatcatcactgcaaagcagctcgacattggtctttctagatcttgcatggaacaagttctacggaacattaccatcatggattggagacttggtgaacctacgattttttggagcttag
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| Protein seq | MHPAASKLMLLVVAAAAAAACSFSPPAAATAGGATNALEQQLRPDDAGTSCLPHERDALLAFKQGITLDYYGFLSSWRRGQEEEEDCCRWRGVTCSNRTGHVIKLDLSIPSSFFPWRDMHATNISWLAHLHFLEYLDMSLINLSMAVDWPSVISTITSLQSLHLSSCSLPGTSQSMTQLNLTRLVELDVSSNDFGNPLGTSSVLEFLDSMENIRYLDLTRTSILSGRVPPQLGNLSTLRHLGLGFMPNMYSTDISWLTHLQQLEYLHMGGINLSTITDWPLVVNMIPSLKETNIKHLSLDETYLHGPFPDALGEMTSLQDLYFDRNGNLATMTVDLKNLCALGVLALDGSLSHGNITEFIDKLPKCSSGSFTILDLANNNMTGVLPTTMEHLTSLESLVLLNNSISGPIPPGILNLTSLRSIFLALNRLNGHIPLISKNLQNLDIAMNNLSGHLPVEFGAPDLEVIVLSSNRFTGHVPRSISKLQKLRFLDLSNNYFYGELPRMPNLLYLLLSNNRFSGKFPLWLQSFSALALLDLSWNNLDGTLPIWIGDLAGLTFLQLSHNKFYGDIPLNITNLTKLQLLNLAGNNLSGTIPQRLSNLIGMTLKHRKRLGTEWYESEVGDVFLGVDDVFLDMLSVVIKHQELKYHPDGAFQMVGIDLSLNHLTGLIPDGITSLNGLENLNLSWNQLSGRIPDNIGALKSLESFDFSRNNLSGEIPPSLSDLTYLSSLDLSYNNLVGRIPRGRQLDTLYDNDPSMYDGNSGLCGPPLRRNCSGLLVRQLEIKYPSHMLRFKRQYTSIPFSFPVAALPTVRWWRGKPSISPRLSSNYFIGHIPESICELHGLLAFDLSNNLLDGELHESFQMPKMVFLLLSNNNFSGKFPSSLQSSSTLVFLDLAWNKFYGTLPSWIGDLVNLRFFGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.010633 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0514700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0514700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015180 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004950 | SBH | 0.351912 | 0.244407 | 1.702016 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017180 | SBH | 0.015455 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017320 | SBH | 0.0 | 0.0 | 0.145598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0327800 | RBH | 0.2638165 | 4.0519665 | 0.0045325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017940 | SBH | 0.025503 | 0.000000 | 0.045280 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344100 | SBH | 1.287871 | 12.7846285 | 1.149585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017820 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017250 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017640 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017370 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017610 | RBH | 0.0 | 0.000000 | 0.0 |
