Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017480 | OGI:11061480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:22635580-22637079 | ||||||||
| Gene Symbol | RLCK334, OsRLCK334, - | ||||||||||
| DNA seq | ttatgaatcttcgacctctgaatgaggtagcgcattgatcaggtatgtccagcttcagtcaacaaattgtgaccaacgagacaatataatgccattgtgcattcaggttgaatcaacattttgtaaccctcctggccgttacaccaccttctgatcttcttcaagcgttctgccacctccactggtggagaaaccatctttggtcggcctggcaaattccacaatagtCccggttccaaaaagaaccaggactaaagattgtttttagtcccggttataaaaattttgatcttaagtcccggttgatgttaccaactggaactaaagatgatcttaagacccggttcgtggcctgtcagagacatgttagggggccgaggatctttagtcccggttggtaacaccaaccgggagtaatctttgctcccgattggtgttatcaaccgggactaaagagatctttagtcctggttaaaaactctaaccgggagtaaatatttctctcccacatctaatcggttaagtcccaaaccaacttcctcctcattagattctcctcctatctctcagatcagatctagctccttcctctccccttcctcctCctcccccctCctccccttcctcatcctcccctctcctcctcacatccgagggccggcgtcggtgggcggcggggctgcacacggcacggcggcgcgcgtcggcggcggccggtggggcagcgcgcggcggccgtgacaagcagtggcaggcgtgtggcagcgcgccggttctcccttttttatatattttgtgatttgagagatgtataatttcttctattacaatttgtgattcattgcatggatctgagatgtataatcgatctgtgatgcatttcatttgtgtgtaatttgtttaagatttgtgatgttttgtaaaatttaggatttgtatttgtgatgtgaatgatttgggatgttacattgatttggggatttggtatttgatttggccggatatatacatccaactcgatttgggagaaaataaaaagaaaatggactgcccgtaccaaccgggactaaagaggatcgatatttactcccggttatttcatctggaactaaagatagcgatctttagtcccggactacaggggggttacgaaccggactaaaaagcaattctccaccagtactccttcatcgatggtcgtttgctcaatttcaaactgatgcaatggagtgacaactctccgatctcttcaagaacagggatattttcttcagttgcaatcccctcatcaaacatccattttccacttttgttcatcttgtatgctctggcgaattcggagactagtccatatttctccggacaatctccaactggttgcttccttgtaatgagttccaaaagagcaacgccaaagcggtgaacatcgctttttgagtagcaattagtgtgcctacagtacgggtcgatgtagtttctatcgcctttaaccatagacat
More
|
||||||||||
| CDS seq | atgtctatggttaaaggcgatagaaactacatcgacccgtactgtaggcacactaattgctactcaaaaagcgatgttcaccgctttggcgttgctcttttggaactcattacaaggaagcaaccagttggagattgtccggagaaatatggactagtctccgaattcgccagagcatacaagatgaacaaaagtggaaaatggatgtttgatgaggggattgcaactgaagaaaatatccctgttcttgaagagatcggagactggacatacctgatcaatgcgctacctcattcagaggtcgaagattcataa |
||||||||||
| Protein seq | MSMVKGDRNYIDPYCRHTNCYSKSDVHRFGVALLELITRKQPVGDCPEKYGLVSEFARAYKMNKSGKWMFDEGIATEENIPVLEEIGDWTYLINALPHSEVEDS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017480 | OsLima_11g0017480.01 | Chr11 | 22635580 | 22637079 | - | NAM | ||
| CDS seq | atgtctatggttaaaggcgatagaaactacatcgacccgtactgtaggcacactaattgctactcaaaaagcgatgttcaccgctttggcgttgctcttttggaactcattacaaggaagcaaccagttggagattgtccggagaaatatggactagtctccgaattcgccagagcatacaagatgaacaaaagtggaaaatggatgtttgatgaggggattgcaactgaagaaaatatccctgttcttgaagagatcggagactggacatacctgatcaatgcgctacctcattcagaggtcgaagattcataa
More
|
|||||||
| Protein seq | MSMVKGDRNYIDPYCRHTNCYSKSDVHRFGVALLELITRKQPVGDCPEKYGLVSEFARAYKMNKSGKWMFDEGIATEENIPVLEEIGDWTYLINALPHSEVEDS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0556400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35274 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0556400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017280 | SBH | 0.462349 | 2.043714 | 2.421232 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017340 | SBH | 0.0 | 1.149969 | 0.744601 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017220 | SBH | 0.330722 | 0.0 | 1.566111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023930 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017140 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0323900 | SBH | 0 | 0 | 0.0222185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017640 | SBH | 0.052019 | 0.0 | 0.375510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0333300 | RBH | 10.11452 | 0.6986015 | 0.019582 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017030 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017010 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017350 | RBH | 0.0 | 0.0 | 0.0 |
