Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0015480 | OGI:11055260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:20362681-20370130 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tccttacggggaaccctacaagctgattatcagaaatcatagcaagtgcatacttctcacatatttgagatgatccttagatgagggtacttgctactgtcaatggcatacatggatctaaattcaggcctcaatttcttatatagaacttcccggtccaaaaaaatcaacctgcaagtatagattatcaaatcggttactttgttcacttaaatcctgaaagtccattgcgcaaacaaattcacgttataatgtggatggaaaatcacctgtccatgttactgtgagaatatttctgagcttgaaacaaaatgtcctaacaaaacagatttgtgtcaacatatgaaagacagcctacatcacaatttaactaaaaaagagggcattttgaataagatagaaccaatagtttcatattggatttacatacgattatctaacccttctttaaacaactctgcatcggtaacaggaagcctaagttttcacatatctaaaacgccaaccttaccacactaaattggtggtccagtaaacaacatttcagaacaaatgacatactgaatcatgcatatgtgaatattgagacccactgaacaaacaggagtcaggaaagacagcacaaaagacctaatccctactgaatagttctgcagactcctaatggctgtcttctctaggcactattagctttgagagttaatagctagcagactagagcataaataactaggcatggagaacacagagtagtttctgatttaccaactgccagtagagttagtggcccacggcactaagatgaatgaacatagtttccaataacacatgcactgacactgcagaaaagttgcacacaagcccctctctcatgagttgttctgatatcttgttctttccaagttcagcatgttggattcagtagctacactagattgaaggcagcatgcaatagaatatttcagagatacgcatctgtgtccatgcatcatagcacatggagctggctattccaactatattgattttttaaccttgtcaatattttttttgccgggccggcaaaagattgccggccagagtatattaagaaagagtgcaagaatgtacattattacaaacacgcccccgaaaactaagggcgagaagacagaaaagagaaaaggctacagcacacagccgcctttgccgcttacgaagctacaatcaagcccgctgcaatccaagttctccattcatcttctatggctgcagaaaggttgacaggcgagcaggctcgaccctcaaatacacgcgcattgcgctccttccaaatcagccaggtcaccaaaatgtcgcccgcattgaaagatctcctatcctttttggcgattgcctttcgcactttacaccaccaggacgagaagacatcatccggtgctgcgtaaagaaggccgacatgacccctgaccagcccccagacctcccgagtgtaggggcaaccatagaagatatgggagcaggtctcgaaccttgtcaatatcatatttggtttctagaactactgcagttcgtaaggatgttaatagatgctcactacatagtagatgcacagatctgttgccacagttatcgcccatgtcccacctcccaatcacattaaagccctaaacactaatggataaaactgtctaatacctagctaaactattgaacactcaagcattctgtagtactctttaaataaacgtataataagcattctttgcattgcattattgttgctcacggaaaaattacctcaaaacacccaaccattgtatccacttcttgcatcatctcaaaataaactggaagatatcttcgaaattcatcttcaaactgcataaaacaaaaaatatgttttaatagatgataaaatccaaaaatcatggttccactaaattgtagttgagatcatcgaaaacaaggaaatatgagaacatacctcccaattccatgtacaaatcttgcccttgtgtgcctgctgcaatttaatacattttctgaagaaaaatatcatttgtcacaggacaaaataaaatgtcaaaaactcttgtacccatgaaatacatataatagaggaaaacacagcaagtagaatctgcatgagtatctgagcaagcatggtacatacccaatctctcggatatcctgtagccattgtctcatctcaatttcttggaaaccttcctcctcatcgatcccaagtcttttagcttttgcaaacctttttgatagatcataagtaatctctcgattccagagggcatgtacacattgaaggaactgaaagacaataatttcaagtcaacagatatacaaataattcacaagattcaaaactaactagaaataaagcaagcattcaacatcattatgtatataatcttatgataatgtgaacttttatgtggagatatacccttaggagcaatggaaggatcaaccctaagagactacctctgagtatttatcaggcatttggattgcatgagactcttctgctctccttttgagctgcccttcccatgtcttcgccacatcatgaacattcttcacaaactgtctattagaaaatagacgtgcgaggcaccatgcataatgtgtgtatttgctttcccactctggctgggttcaaattttgctaagaggactgagtatacaagaacttccttgtatcgctgaatcctaaaagagaaaagaatatgatgcaagtaattatttctactacatggagcctactacggtagcacatagtagctccacccaattaatgttagacaataacaaattacatgatgacacatctagaccaggatgacgcagtaaggaatgcttcagatataatattatgctctgcaatgagtagacagcccaagtggtggaaagagtttgctcgtctagctccatcattaccctgaaacataatagaacaatagaatacatatacaacatagtgtgcatctttaaaagcatgtgcatctaatacctagtgaaaatgattgctactctagaaagagttgaagggtaaacactttcattaacatgtagtatcatcgcccattagagtgaaaacttatgtgctacatgatgggattagtgccatacggagagtgctgcaagcctccaacaatagcacttctgggttaacaacttttttcacatgaagaaaggacaaaagagaaagtcgagtactcgagtgctatccgtatgtgaacctgaccccatggaagagacagggaacaatacagaggctggggtgttacaataaatgaaatacctaattaccatggaaaatcaaaacgaaacttagcaaattgtgacacttcttatggaaggtatagttttatatgggaaattcgaactgttagaatctgctgtgttcttcatgagctgatttagaacaccaaacagcaaataaatatattattggattagatggcaacgcagttactaccattcttgggtctgcggcatccagcatgttatctctactatcattgtcatgcccatcattccccaataactatcataatactcatcagtatcaaacatgtcaattgccatgaacctccagtagatatagaatgaagatttagttgctagatagggataatatgagataaaaatatatatgcaaaccatgataaatattcctaccaggagatctaattcacaatcaggagaactcattacgactgcagtgctacgtttgtttttgctgctgctgctgcttccactgctcagtctcttctgcacactagttttctggaatattgtaccagagctattgctgtagcggctggaactactactacttgtatcctttggattcgcagagatactcaatgcaccctgtaaagctggtacataatgaaatgtggtatgtggacagaatagataatcctgcatgaggaaaaactctctgttatcacattagaggattaaagaaaacaataaaaaattgagaacttcaatgcacttcaaagtatcttgtgaatgtttagtagtaatatttaaatgactcactgcaaaatcatgatctgcaacggcaatagcaacatgtcttttcctggagaaacataaacaggcacaagctagtgagaaaaaggcagaagtggagacaaaatgaacatatgtactgtacctctgcaatatatgtttgaaaaactgcgatgcgtgtacacagaaatcattgcaagaaagtaggcatccacatctgcaaaataaagcaaaacaatagttagcattgaatattgactatgtaacaccctgttttaactttgttgatagcatactccttaattagaccatgcatcctcagatcaataacatgagcccaccttgcatatgcattggctgcatctaggacagcttttactacaaatgcatgttcctcagctacttccacctgacgcttttctcacccaaagcagctccaacgtgtttctcaagcaactacaattggacaattaacggagtgcagtaaaaatcaaatccatgtttccataaaacagtaaaccaccaagactactgatgaatagccaagaaaaaactcacaaaggaaatgaatggcaaaatctgctgaaggaactcagataaggaaagcggtttgcctttatcaccgattaaaaccaatggtgtcaatttacctgttagttgaactactacccataaaagaattatgattcttacctccagaatgtgaaacatgagcaattcgattatcagaaattgacttcagaataaagcaaactaattcggtctaacaattcacacgacaaaacaaaataatattagtcacacaaatgtcagtacaaataggtcaaagtggtggttaaaatagacaaacttacctcagtagcaccctttgctgatagacacacaaggcatgggattaggtcatgcaagagagaaattccatggctccaaaccacctgctacattaaattgttattgagaaatagtatgaattttcaacataatacataagaatgaatcggtaccaacgcaaacaataaaataagattaaatcataacctctgcaactaaatcagctgctgcattcttccaaaccagatcatcgggaactcccaactcaactcctaataaactaaaaacatgagcaaatttgcttcaatttatgatgctaacttcctcccacctgaatctcatcaaatgctgcaaaataacaatacagaatgtgatgaatacacagttctatagcataaacattggaaacaactgcaggcctgacataagaactcatggacgaaatctcaactacggatgccttatctgcatctaatataaaggaaaacaggatgtgaaaggttgtgctcataattcttcattatagtaaatactgcaagtgtgagtcttgaatagagtaattccgaaatggcgagaattagatagcaacaaaataatgaaaggtatgagatcaataaattaatcggtccacaataaccatcatctgaccattgttcccccagtcagatccattaagagttggcacaaccctatagatggaattggctgctgcagctcacatcacatccaacgtaggtgtagcattacttaagtgcctagggggattttgttctgaggcccatggaagtggataaaaaaatttggcaactatttttactagatttggaatttcatcagaatccctttccaaggtctctccaactattctttcggaaacatgggggcagccaactagatataaccaaaatttagcaaacttgttagtgcaattctagacatcaaccttaacatttcttccctgcatgacacataattgaagaacgataatggttatcacttgaagcaattctggcatatgtcaaacagaatggcaagaattagactaaaatacgtacatgattagtaaaatcctatgttgtagtacaaattttcaggacacatccaaacttgaaagtaactgaaaggcaaaattggttttgtgccactgaaagatctagagttagatttataccaccaaaagtaactggtacattttaatgcaattgacagtttacaaagttaagttatttgacattttcgtcttctcccattatgtatgaccataacactgctcacattgtcttccacaccgcacacacaagctcacaactagcaacccatccagctacccttccttcctgtctattcccggagttgtccaccgctctgagtctcccatccacctgccacaacattaattctctccagaaactgcaaatcccatgttcacttctaccgttagagtgctccatgaggtgaagactaacaaatcccatgttcacttctaccattagagtgctccacgaggtgaagactaacatcagttgagacctgctcggtggtcatcctggcatcaccaggaacagttgcaggaactagctctctcagacatagttgaaggggggtttactactaatcatcatgggagttcaaagtaagaaatgaccaaagggaaaaacaattaaattgtggtaaagtttatagaaacaatatagagaaataactggtctgtttagtttgacagatttgactaggttttccttcatgccgatcatcaagtatcagaaaccaaaatgaatttatgcgatgcaaatcagaacttgtcacagttagtaccttatgtgataagacaaatcaaaaggtggctggtgaatgatataattatgatgatagaataatacaatgaatcataaaactgtttcaaaggacatgttggtagtaaaatgcaatgaatcagatccaagattcatcacacgactattcttcctaaatttgatacgaaacatatatccccaactccttttaaatttctatctgcaatgtcattgtggagaatatcatctgctatatgctgccatttagttgcaattcactaaagtatttgatcattaggcaaatattgagaacttcatccacttccccttcccactaaaccgtgcaacccaatattttagacgcaataggatgggcaaaaattgcagataaatggaagcacacaacgaaaaggttatcctccgatcaagtccacgacaaagcacataatgtcagcacatcaggaattaaattaaacgacctgtagcaatctgacgccatgtccccggacctcatgagggaaatccttcctgataagatgaagcgacgccctcaccaacgcatcgacatacccttcatccctcacctgcggcgtcaaatcaagcaagcaaaaagaaataaaaaaaatgatcaaattctgttgcacaactcatcggacagagccccgccaaagcgagataaaatttgcgtagccccgaaccatcacgatgaccggggaccgccaccgatcaggcagtacagagaaatccctcaccggcacgggattgcagtcgacagcgcggacggacgttgtggcggcgtccat
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| CDS seq | atggacgccgccacaacgtccgtccgcgctgtcgactgcaatcccgtgccggtgagggatgaagggtatgtcgatgcgttggtgagggcgtcgcttcatcttatcaggaaggatttccctcatgaggtccggggacatggcgtcagattgctacagcatttgatgagattcaggtgggaggaagtggtttggagccatggaatttctctcttgcatgacctaatcccatgccttgtgtgtctatcagcaaagggtgctactgagcgtcaggtggaagtagctgaggaacatgcatttgtagtaaaagctgtcctagatgcagccaatgcatatgcaaggtgggctcatgttattgatctgaggatgcatggtctaattaaggagtatgctatcaacaaagttaaaacaggagagtttttcctcatgcaggattatctattctgtccacataccacatttcattatgtaccagctttacagggtgcattgagtatctctgcgaatccaaaggatacaagtagtagtagttccagccgctacagcaatagctctggtacaatattccagaaaactagtgtgcagaagagactgagcagtggaagcagcagcagcagcaaaaacaaacgtagcactgcagtcgtaatgagttctcctgattgtgaattagatctcctggtaggaatatttatcatgggtaatgatggagctagacgagcaaactctttccaccacttgggctgtctactcattgcagagcataatattatatctgaagcattccttactgcgtcatcctggtctagatgtgtcatcatgattcagcgatacaaggaagttcttgtatactcagtcctcttagcaaaatttgaacccagccagagtgggaaagcaaatacacacattatgcatggtgcctcgcactttgtgaagaatgttcatgatgtggcgaagacatgggaagggcagctcaaaaggagagcagaagagtctcatgcaatccaaatgcctgataaatactcagagttccttcaatgtgtacatgccctctggaatcgagagattacttatgatctatcaaaaaggtttgcaaaagctaaaagacttgggatcgatgaggaggaaggtttccaagaaattgagatgagacaatggctacaggatatccgagagattggaaaatgtattaaattgcagcaggcacacaagggcaagatttgtacatggaattgggagtttgaagatgaatttcgaagatatcttccagtttattttgagatgatgcaagaagtggatacaatggttgggttgatttttttggaccgggaagttctatataagaaattgaggcctgaatttagatccatgtatgccattgacagtagcaagtaccctcatctaaggatcatctcaaatatgtga
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| Protein seq | MDAATTSVRAVDCNPVPVRDEGYVDALVRASLHLIRKDFPHEVRGHGVRLLQHLMRFRWEEVVWSHGISLLHDLIPCLVCLSAKGATERQVEVAEEHAFVVKAVLDAANAYARWAHVIDLRMHGLIKEYAINKVKTGEFFLMQDYLFCPHTTFHYVPALQGALSISANPKDTSSSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLVGIFIMGNDGARRANSFHHLGCLLIAEHNIISEAFLTASSWSRCVIMIQRYKEVLVYSVLLAKFEPSQSGKANTHIMHGASHFVKNVHDVAKTWEGQLKRRAEESHAIQMPDKYSEFLQCVHALWNREITYDLSKRFAKAKRLGIDEEEGFQEIEMRQWLQDIREIGKCIKLQQAHKGKICTWNWEFEDEFRRYLPVYFEMMQEVDTMVGLIFLDREVLYKKLRPEFRSMYAIDSSKYPHLRIISNM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0015480 | OsLima_11g0015480.01 | Chr11 | 20362681 | 20370130 | - | NAM | ||
| CDS seq | atggacgccgccacaacgtccgtccgcgctgtcgactgcaatcccgtgccggtgagggatgaagggtatgtcgatgcgttggtgagggcgtcgcttcatcttatcaggaaggatttccctcatgaggtccggggacatggcgtcagattgctacagcatttgatgagattcaggtgggaggaagtggtttggagccatggaatttctctcttgcatgacctaatcccatgccttgtgtgtctatcagcaaagggtgctactgagcgtcaggtggaagtagctgaggaacatgcatttgtagtaaaagctgtcctagatgcagccaatgcatatgcaaggtgggctcatgttattgatctgaggatgcatggtctaattaaggagtatgctatcaacaaagttaaaacaggagagtttttcctcatgcaggattatctattctgtccacataccacatttcattatgtaccagctttacagggtgcattgagtatctctgcgaatccaaaggatacaagtagtagtagttccagccgctacagcaatagctctggtacaatattccagaaaactagtgtgcagaagagactgagcagtggaagcagcagcagcagcaaaaacaaacgtagcactgcagtcgtaatgagttctcctgattgtgaattagatctcctggtaggaatatttatcatgggtaatgatggagctagacgagcaaactctttccaccacttgggctgtctactcattgcagagcataatattatatctgaagcattccttactgcgtcatcctggtctagatgtgtcatcatgattcagcgatacaaggaagttcttgtatactcagtcctcttagcaaaatttgaacccagccagagtgggaaagcaaatacacacattatgcatggtgcctcgcactttgtgaagaatgttcatgatgtggcgaagacatgggaagggcagctcaaaaggagagcagaagagtctcatgcaatccaaatgcctgataaatactcagagttccttcaatgtgtacatgccctctggaatcgagagattacttatgatctatcaaaaaggtttgcaaaagctaaaagacttgggatcgatgaggaggaaggtttccaagaaattgagatgagacaatggctacaggatatccgagagattggaaaatgtattaaattgcagcaggcacacaagggcaagatttgtacatggaattgggagtttgaagatgaatttcgaagatatcttccagtttattttgagatgatgcaagaagtggatacaatggttgggttgatttttttggaccgggaagttctatataagaaattgaggcctgaatttagatccatgtatgccattgacagtagcaagtaccctcatctaaggatcatctcaaatatgtga
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| Protein seq | MDAATTSVRAVDCNPVPVRDEGYVDALVRASLHLIRKDFPHEVRGHGVRLLQHLMRFRWEEVVWSHGISLLHDLIPCLVCLSAKGATERQVEVAEEHAFVVKAVLDAANAYARWAHVIDLRMHGLIKEYAINKVKTGEFFLMQDYLFCPHTTFHYVPALQGALSISANPKDTSSSSSSRYSNSSGTIFQKTSVQKRLSSGSSSSSKNKRSTAVVMSSPDCELDLLVGIFIMGNDGARRANSFHHLGCLLIAEHNIISEAFLTASSWSRCVIMIQRYKEVLVYSVLLAKFEPSQSGKANTHIMHGASHFVKNVHDVAKTWEGQLKRRAEESHAIQMPDKYSEFLQCVHALWNREITYDLSKRFAKAKRLGIDEEEGFQEIEMRQWLQDIREIGKCIKLQQAHKGKICTWNWEFEDEFRRYLPVYFEMMQEVDTMVGLIFLDREVLYKKLRPEFRSMYAIDSSKYPHLRIISNM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0517400 | RBH | 0.0 | 0.0 | 3.687678 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31700 | RBH | 0.0 | 0.0 | 0.978769 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0517400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015330 | SBH | 0.0 | 0.0 | 8.127762 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015290 | SBH | 0.0 | 0.0 | 2.412430 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015240 | SBH | 0.115225 | 0.000000 | 13.953617 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015340 | SBH | 0.0 | 0.0 | 3.065104 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0292400 | SBH | 0.230818 | 1.6535065 | 33.372328 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015560 | SBH | 0.0 | 0.0 | 0.288076 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0303700 | SBH | 0.035869 | 1.3562585 | 10.6199575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014920 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015220 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015050 | SBH | 0.0 | 0.0 | 0.850850 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015360 | SBH | 0.0 | 0.000000 | 2.233903 |
