Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g31700 | OGI:11055260 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:18552508-18556300 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGGGCAAAGTTGGCTTTCATTTCAAAAAAGTAGAGGCAAAAAAGAAAACCTAAAAAAATACAGGGGCAAAATCAAAATTGAAGATCAAAATAGGGGTAAAATAGTCGATCCGAAGTAATTGATGCTAAAATGTAAAATAGTTGTTGTACTCTTTTTTCCTTACGGGGAACCCTACAAGCTGATTATTAGAAATCATAGCAAGTGCATACTTCTCACATATTTGAGATGATCCTTAGATGAGGGTACTTGCTACTGTCAATGGCATACATGGATCTAAATTCAGGCCTCAATTTCTTATATAGAACTTCCCGGTCCAAAAAAATCAACCTGCAAGTATAGATTATCAAATCGGTTACTTTGTTCACTTAAATCCTGAAAGTCCATTGTGCAAACAAATTCACGTTATAATGTGGATGGAAAATCACCATTGTTGTCCATGTTACTGTGAGAATATTACTGAGCTTGAAACAAAATGTCCTAACAAAACAGATTTGTGTCAACATATGAAAGACAGCCTACATCACAATTTAACTAAAAAACAGGGCATTTTGAATAAGATAGAACCAATAGTTTCATATTGGATTTACATACGATTATCTAACCCTTCTTTAAACAACTCTGCATCGGTAATAGGAAGCCTAAGTTTTCACATATCTAAAACGCCAACCTTACCACACTAAATTGGTGGTCCAGTAAACAACATTTCAGAACAAATGACATACTGAATCATGCATATGTGAATATTGAGACCCACTGAACAAACAGGAGTCAGGAAAGACAGCACAAAAGACCTAATCCCTACTGAATAGTTCTGCAGACTCCTAATGGCTGTCTTCTCTAGGCACTATTAGCTTTGAGAGTTAATAGCTAGCAGACTAGAGCATAAATAACTAGGCATGGAGAACACAGAGTAGTTTCTGATTTACCAACTGCCAGTAGAGTTAGTGGCCCACGGCACTAAGATGAATGAACATAGTTTCCAATAACACATGCACTGACACTGCAGAAAAGTTGCACACAAGCCCCTCTCTCATGAGTTGTTCTGATATCTTGTTCTTTCCTAAGTTCAGCATGTTGGATTCAGTAGCTACACTAGATTGAAGGCAGCATGCAATAGAATATTTCAGAGATACGCATCTGTGTCCATGCATCATAGCACATGGAGCTGGCTATTCCAACTATATTGATTTTTTAACCTTGTCAATATTTTTTTGCCGGGCCGGCAATCTGAGGGCGAGAAGACAGAAAAGAGAAAAGGCTACAGCACACGGCCGCCTCTGCCGCTTACGAAGCTACAATCAAGCCCGCTGCAATCCAAGTTCTCCATTCATCTTCTATGGCTGCAGAAAGGTTGACAGGCGAACAGGCTCGACCCTCAAATACACGCGCATTGCGCTCCTTCCAAATCAGCCAGGTCACCAAAATGTCGCCCGCATCGAAAGATCTCCTATCCTTTTTGGCGATTGCCTTTCGCACTTTACACCACCAGGATGAGAAGACATCATCCGGTGCTGCGTAAAGAAGGCCGACACGACCCCTGACCAGCCCCCAGACCTCCCGAGTGTAGGGGTAACCATAGAAGATATGGGAGCAGGTCTCGAACCTTGTCAATATCATATTTGGTTTCTAGAACTACTGCAGTTCGTAAGGATGTTAATAGATGCTCACTACATAGTAGATGCACAGATCTGTTGCCACAGTTATCGCCCATGTCCCACCTCCCAATCACATTAAAGCCCTAAACACTAATGGATAAAACTATCTAATACCTAGCTAAACTATTGAACACTCAAGCATTCTGTAGTACTCTTTAAATAAACGTATAATAAGCATTCTTTGCATTGCACTATTGTTGCTCACGGAAAAATTACCTCAAAACACCCAACCATTGTATCCACTTCTTGCATCATCTCAAAATAAACTGGAAGATATCTTCAAATTCATCTTCAAACTGCATAAAACAAAAAATATGTTTTAATAGATGATAAAATCCAAAAATCATGGTTCCACTAAATTGTAGTTGAGATCATCGAAAACAAGGAAATATGAGAACATACCTCCCAATTCCATGTACAAATCTTGCCCTTGTGCGCCTGCTGCAATTTAATACATTTTCTGAAGAAAAATATCATTTGTCACAGGACAAAATAAAAAGTCAAAAACTCTTGTACCCATGAAATACATATAATAGAGGAAAACACAGCAAGTAGAATCTGCATGAGTATCTGAGCAAGCATGGTACATACCCAATCTCTCGGATATCCTGTAGCCATTGTCTCATCTCAATTTCTTGGAAACCTTCCTCCTCATCGATCCCAAGTCTTTTAGCTTTTGCAAACTTTTTTGATAGATCATAAGTAATATCTCGATTCCAGAGGGCATGTACACATTGAAGGAACTGAAAGACAATAATTTCAAGTCAACAGATATACAAATAATTCACAAGATTCAAAAGTAACTAGAAATAAAGCAAGAATTCAACATCATTATGTATATAATCTTATGATAATGTGAACTTTTATGTGGAGATATACCCTTAGGAGCAATGGAAGGATCAACCCTAAGAGACTACCTGAGTATTTATCAGGCATTTGGATTGCATGAGACTCTTCTGCTCTCCTTTTGAGCTGCCCTTCCCATGTCTTCGCCACATCATGAACATTCTTCACAAACTGTCTATTAGAAAATAGACGTGTGAGGCACCATGCATAATGTGTGTATTTGCTTTCCCACTCTGGCTGGGTTCAAATTTTGCTAAGAGGACTGAGTATACAAGAACTTCCTTGTATCGCTGAATCCTAAAAGAGAAAAGAATATGATGCAAGTAATTATTTCTACTACATGAAGCCTACTACGGTTGCACATAGTAGCTCCACCCAATTAATGTTAGATAATAACAAATTACATGATGACACATCTAGACCAGGATGACGCAGTAAGGAATGCTTCAGATATAATATTATGCTCAGCAAGGAGTAGACAGCCCAAGTGGTGGAAAGAGTTTGCTCGTCTAGCTCCATCATTACCCTGAAACATAATAGAACAATAGAATACATATACAACATAGTAGTGTGCATCTTTAAAAGCATGTGCATCTAATACCTAGTGAAAATGATTGCTACTCTAGAAAGAGTTGAAGGGTAAACACTTTCATTAACATGTAGTATCATCGCCCATTAGAGTGAAAACTTATGTGCTACATGATGGGATTAGTGCCATACGGAGAGTGCTGCAAGCCTCCAACAATAGCACTTCTGGGTTAACAACTTTTTTCACATGAAGAAAGGACAAAAGAGAAAGTCGAGTACTCGAGTGCTATCCGCATGTGAACCTGACCCCATGGAAGAGACAGGGAACAATACAGAGGCTGGGGTGTTACAATAAATGAAATACCTAATTACCATGGAAAATCAAAACGAAACTTAGCAAATTGTGACACTTCTTATGGAAGGTATAGTTTTATATGGGAAATTCGAACTGTTAGAATCTGCTGTGTTCTTCATGAGCTGATTTAGAACACCAAACAGCAAATAAATATATTATTGGATTAGATGGCAACGCAGTTACTACCATTCTTGGGTCTGCGGCATCCAGCATGTTATCTCTACTATCATTGTCATGCCCATCATTCCCCAATAACTATCATAATACTCATCAGTATCAAACATGTCAATTGCCATGAACCTCCAGTAGATATAGAATGAAGATTTAGTTGCAAGATAGGGATAATATGAGATAAAAATATATATGCAAACCATGATAAATATTCCTACCAGGAGATCTAATTCACAAT
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| CDS seq | ATGTTCATGATGTGGCGAAGACATGGGAAGGGCAGCTCAAAAGGAGAGCAGAAGAGTCTCATGCAATCCAAATGCCTGATAAATACTCAGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGA |
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| Protein seq | MFMMWRRHGKGSSKGEQKSLMQSKCLINTQFLQCVHALWNRDITYDLSKKFAKAKRLGIDEEEGFQEIEMRQWLQDIREIGKCIKLQQAHKGKICTWNWEFEDEFEDIFQFILR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g31700 | LOC_Os11g31700.1 | Chr11 | 18552508 | 18556300 | - | MSU_osa1r7 | ||
| CDS seq | ATGTTCATGATGTGGCGAAGACATGGGAAGGGCAGCTCAAAAGGAGAGCAGAAGAGTCTCATGCAATCCAAATGCCTGATAAATACTCAGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGA
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| Protein seq | MFMMWRRHGKGSSKGEQKSLMQSKCLINTQFLQCVHALWNRDITYDLSKKFAKAKRLGIDEEEGFQEIEMRQWLQDIREIGKCIKLQQAHKGKICTWNWEFEDEFEDIFQFILR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g31700 | LOC_Os11g31700.2 | Chr11 | 18552508 | 18556300 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTGATAAATACTCAGGTAGTCTCTTAGGGTTGATCCTTCCATTGCTCCTAAGGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGA
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| Protein seq | MPDKYSGSLLGLILPLLLRFLQCVHALWNRDITYDLSKKFAKAKRLGIDEEEGFQEIEMRQWLQDIREIGKCIKLQQAHKGKICTWNWEFEDEFEDIFQFILR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.978769 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0517800 | SBH | 0.0 | 0.0 | 3.078434 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0517800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015330 | RBH | 0.0 | 0.0 | 8.127762 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015290 | RBH | 0.0 | 0.0 | 2.412430 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015240 | RBH | 0.115225 | 0.000000 | 13.953617 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015340 | SBH | 0.0 | 0.0 | 3.065104 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0292400 | RBH | 0.230818 | 1.6535065 | 33.372328 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015550 | RBH | 0.0 | 0.0 | 0.118708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0303700 | RBH | 0.035869 | 1.3562585 | 10.6199575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014910 | RBH | 0.0 | 0.0 | 0.126599 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015220 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015050 | SBH | 0.0 | 0.0 | 0.850850 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015360 | SBH | 0.0 | 0.000000 | 2.233903 |
