Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0014620 | OGI:11051590 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:19060774-19061256 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaattgcccttccacctaaaatgactaaaatgaccatagaaatcaacgatgagattcattcctactacactactaccacctctagtggaatgtactgtaaaaggcctcaaaaattataggcaagagctacagtcagcttctaagtcttgcatcagaacaataaaattttgaaagtagaaccaacagttaattaattgacgtttatcctaagatgtatgtgtaccgagttaatcattggttcgtgcgcgaaatttcagatggggggggggggggggtagcaaaggacactgccgaatcaccagactcttgagggaagtaaagccagtaagcccctcgcagtattccagacgatcacagaaacataactcaatcctagagagcgacggcaagcgtttccgatcaagagggatgctcgttagtgtatgggagttaatgtacaagaactctagcagcggggcgtcatcaagcagactggccagcat
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| CDS seq | atgctggccagtctgcttgatgacgccccgctgctagagttcttgtacattaactcccatacactaacgagcatccctcttgatcggaaacgcttgccgtcgctctctaggattgagttatgtttctgtgatcgtctggaatactgcgaggggcttactggctttacttccctcaagagtctggtgattcggcagtggaagggcaattaa |
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| Protein seq | MLASLLDDAPLLEFLYINSHTLTSIPLDRKRLPSLSRIELCFCDRLEYCEGLTGFTSLKSLVIRQWKGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0014620 | OsLima_11g0014620.01 | Chr11 | 19060774 | 19061256 | - | NAM | ||
| CDS seq | atgctggccagtctgcttgatgacgccccgctgctagagttcttgtacattaactcccatacactaacgagcatccctcttgatcggaaacgcttgccgtcgctctctaggattgagttatgtttctgtgatcgtctggaatactgcgaggggcttactggctttacttccctcaagagtctggtgattcggcagtggaagggcaattaa
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| Protein seq | MLASLLDDAPLLEFLYINSHTLTSIPLDRKRLPSLSRIELCFCDRLEYCEGLTGFTSLKSLVIRQWKGN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0493700 | SBH | 0.0 | 0.0 | 0.380883 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29920 | SBH | 0.0 | 0.0 | 0.078894 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0493700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014510 | SBH | 0.0 | 0.000000 | 0.735389 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014490 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014370 | SBH | 0.087663 | 0.0 | 0.118568 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014440 | SBH | 0.258863 | 0.853887 | 0.836064 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0271700 | SBH | 0.0044955 | 0.051896 | 0.035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014750 | SBH | 0.0 | 0.041382 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0282800 | SBH | 0.053712 | 0 | 0.0025275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014580 | SBH | 0.0 | 0.028889 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014610 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014120 | SBH | 0.000000 | 0.0 | 0.066785 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014350 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014150 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014380 | RBH | 0.000000 | 0.0 | 0.0 |
