Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLiXu_11g0014120 OGI:11051700 | 16/16 LIU XU | Os125827RS1 | Gramene(+IsoSeq) Chr11:20294012-20297834
Gene Symbol -
DNA seq

ctatctaccataaagctcaaacttttgcagattgcatgggagcgaacgatgtaaattgagcttgggacactccattacatttagttctctgagcgaggtgagactgacaagtccatcacagtattgcagatcataacagaataataatctgagggtagcaagtgatgtcaaatactggggcctaagcgggatgctcaccaatggagaagaataaatctccaagtgttcgagtggcgagttcaagctcagccaactatcaaacacctcagttttaaatggaccagacagtttcagtacactgagttctgggaaaagaccaactgcacgtaggcttgggcagtgtgatatctcgagtttccaaagtgattccatcgtaggaagttcaagtagacttgcacatttgttgatacttagctcgcaaagggttggagacataggaataatagctcccaggcctgagcaatttgatatgttcagttccataagtgatgggagagtgggaagttcaagtagactcgcacagtccttgatacttagatactgaagggctgggaacatagggattgtagctcccaggcctgagcaatttgatatgttcagttccataagtgatgggagagtgggaagttcaagtagactcgcacagtccttgatacttagatactgaagggctgggaacatagggattgtagctcccaggcctgagcaatttgatatgttcagttccataagtgatgggagagtgggaagttcaagtagactcgcacagtccttgatacttagatactgaagggctgggaacatagggattgtagctcctaggcttgagcagtttgatatctccagcgtaataagggatgggagagaaggaagttcaataagacttgcacaatcatttatatataggtcacaaagggcataggatactggaactgttaccagattaccacaattcgataacctacatgtaaccaaggacgagaagggcaccaatggaagaaatcttagtttattgtcctggcataacaagagagtctctaagcaagcgaaatcaccgtccttcactccagaccattctgacaattcatacatccaggaaaaactcaagttcaccaatgagcggaaaactttaacactttgatttaggcagcaaaactctcgtccaatgaatcgaagattatacattctggaaatctccaaagactcaagggaaggcaactcaccaagtgctggaaggcattccgattcacacttggataacactacttttgtcaacttggaaaaggaagtgttaccaacccaacacgggaagctcaggcctctgtaaccatatatactcagatctctgagggtgtgacatggttgcaaactctccaatagttccttatgagatactgcaccaggcttatgctgctgcagttgttgatggtgtgagctcgtaaaatccaagttgagtgattggaggtgaattttactcgggatatcagcttccattgcatcttcaacactacatacataatccagcccttttagactcaggctccttacttttcttatattcctcagctcacttaagttactgtcatatccacttagtatttcaagtggaggcaaagtttctagcttaattagtcggccgattccacttacaattggtgtatacagatcaaaagctggcttcatcagttctagggtatgtaaattaaaaagctggaataccgatttaggtagttgcatgatctggcaatctatgctgcatctccacctcaaaaagcgtaagagttttaggttgccagctgagtctggtaatagattggtaggcgcagctccattcaagctaaagacgcgcagccgtttgaactttaggaatatgtcatctgggattacaatttcgtcaagtccatgacaaatcacaatgatagctttgagtgaatctgaagaatctgaaatattgatagtactaatttcccagggtgatgttggtactactgacaaataccgagcatttggtgagatttcaacttgtgaattaccttcagttctaacaaactcatctccagcaagaaagcatgcaagatcatggatgaggtcatgcatcttgtatgcactatgagaactaatttcaatcatagacctctgagctaattcatggagatatgaaactgcaagttttgccttatttgctccatcaccatgttgaagtaactccagtggctcccacagaagaaccacattttcttcatgaagtatgtaatcttttggaaacaaggagagggcaataaaacatcgtttcaagtacatgggcatctgcttatagctcagctccagtgctggcagtacctcattctgtgattgctctaagtcccatagatcactctctaagatatccttccacttagtttcatctggttcgtagcgcagcatgcttccaatagtcttgattgccaacggcaaccctttacaccttgaaacaatatccttgccaatttcttgtagacttggattatttgcatgttcttcatccaaaagggcagtttgtttgaacaatgaccagctatcattagaatctaagcagcttaattcacaggaatccattgtttgaaccaatctagcaacattctgacttcgagtagttactataattttgcaaagctttgttgtcaacattggcaaacggaacatttcccagtagtctcttcgttcattccatacgtcatccaatactagcaaaaacctcttatcctgaatttcttttaccagtttttcctgaagatttgcaattgtttcaccatgaggaaacttatttgttgctgagatgattctttttgttatgtcatttacatcgaagttctctgatacacagacccaaacacggacatcaaaagatttgcatacttctgtgttgttgtacacaagctgcgctagagttgtcttgcctactcctggcataccaactatgcccaggactgaaacatggctttcaggtgtactgcttttgttttgggacagcatcttttcaattacagtgtccttgatacttcctctgccaataatgctctgctcaaataccatagagctagtctgccgcacttggtgcatatcaggaatagatcgccgcactccatcattctcagacaaactgaatttactagcgtaatctttgatttcattaaacatgtccatgattttccttgctcgagtagctaactcagatggtactgggactatgtccgaaatgttctggattgtgccatcaaccttcatgttggaaaacataaaaaccttaatcaggaaaactgaatctccttacttctggagaaatttctgttaaatcttaaatgaatgtacataacagaaataacatatcatgcataaacatggtccaaacatcatatataaatatctgatagaatttttgttggcatagattatgcagtgatgaaaattttacctcttcgcgcctgcgcttgccgctgcgattagcccttgcagattgctcaaatgcctccactttatggcgtgtcatctcgtacccgtactcatccaccacgtcctccgcgtcgtaggccaccttcttcagttccttgagccgcagcttggctgtttcctccctgatgttccactgttcctctgcatcgtgcagtgtcgcatggatcctgtgcattgttctctcaagcctcttcagaacctcaaggtcctcgctttcagctggcgctgcggaagacgatgacgatgcaggtgttgataccagacatgctggcagcaaggaatagagcttgtcgatcgcccattcgatagccatggaggcgaatactccagccat

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CDS seq

atggctggagtattcgcctccatggctatcgaatgggcgatcgacaagctctattccttgctgccagcatgtctggtatcaacacctgcatcgtcatcgtcttccgcagcgccagctgaaagcgaggaccttgaggttctgaagaggcttgagagaacaatgcacaggatccatgcgacactgcacgatgcagaggaacagtggaacatcagggaggaaacagccaagctgcggctcaaggaactgaagaaggtggcctacgacgcggaggacgtggtggatgagtacgggtacgagatgacacgccataaagtggaggcatttgagcaatctgcaagggctaatcgcagcggcaagcgcaggcgcgaagaggttgatggcacaatccagaacatttcggacatagtcccagtaccatctgagttagctactcgagcaaggaaaatcatggacatgtttaatgaaatcaaagattacgctagtaaattcagtttgtctgagaatgatggagtgcggcgatctattcctgatatgcaccaagtgcggcagactagctctatggtatttgagcagagcattattggcagaggaagtatcaaggacactgtaattgaaaagatgctgtcccaaaacaaaagcagtacacctgaaagccatgtttcagtcctgggcatagttggtatgccaggagtaggcaagacaactctagcgcagcttgtgtacaacaacacagaagtatgcaaatcttttgatgtccgtgtttgggtctgtgtatcagagaacttcgatgtaaatgacataacaaaaagaatcatctcagcaacaaataagtttcctcatggtgaaacaattgcaaatcttcaggaaaaactggtaaaagaaattcaggataagaggtttttgctagtattggatgacgtatggaatgaacgaagagactactgggaaatgttccgtttgccaatgttgacaacaaagctttgcaaaattatagtaactactcgaagtcagaatgttgctagattggttcaaacaatggattcctgtgaattaagctgcttagattctaatgatagctggtcattgttcaaacaaactgcccttttggatgaagaacatgcaaataatccaagtctacaagaaattggcaaggatattgtttcaaggtgtaaagggttgccgttggcaatcaagactattggaagcatgctgcgctacgaaccagatgaaactaagtggaaggatatcttagagagtgatctatgggacttagagcaatcacagaatgaggtactgccagcactggagctgagctataagcagatgcccatttctcatagtgcatacaagatgcatgacctcatccatgatcttgcatgctttcttgctggagatgagtttgttagaactgaaggtaattcacaagttgaaatctcaccaaatgctcggtatttgtcagtagtaccaacatcaccctgggaaattagtactatcaatatttcagattcttcagattcactcaaagctatcattgtgatttgtcatggacttgacgaaattgtaatcccagatgacatattcctaaagttcaaacggctgcgcgtctttagcttgaatggagctgcgcctaccaatctattaccagactcagctggcaacctaaaactcttacgctttttgaggtggagatgcagcatagattgccagatcatgcaactacctaaatcggtattccagctttttaatttacataccctagaactgatgaagccagcttttgatctgtatacaccaattgtaagtggaatcggccgactaattaagctagaaactttgcctccacttgaaatactaagtggatatgacagtaacttaagtgagctgaggaatataagaaaagtaaggagcctgagtctaaaagggctggattatgtatgtagtgttgaagatgcaatggaagctgatatcccgagtaaaattcacctccaatcactcaacttggattttacgagctcacaccatcaacaactgcagcagcataagcctggtgcagtatctcataaggaactattggagagtttgcaaccatgtcacaccctcagagatctgagtatatatggttacagaggcctgagcttcccgtgttgggttggtaacacttccttttccaagttgacaaaagtagtgttatccaagtgtgaatcggaatgccttccagcacttggtgagttgccttcccttgagtctttggagatttccagaatgtataatcttcgattcattggacgagagttttgctgcctaaatcaaagtgttaaagttttccgctcattggtgaacttgagtttttcctggatgtatgaattgtcagaatggtctggagtgaaggacggtgatttcgcttgcttagagactctcttgttatgccaggacaataaactaagatttcttccattggtgcccttctcgtccttggttacatgtaggttatcgaattgtggtaatctggtaacagttccagtatcctatgccctttgtgacctatatataaatgattgtgcaagtcttattgaacttccttctctcccatcccttattacgctggagatatcaaactgctcaagcctaggagctacaatccctatgttcccagcccttcagtatctaagtatcaaggactgtgcgagtctacttgaacttcccactctcccatcacttatggaactgaacatatcaaattgctcaggcctgggagctacaatccctatgttcccagcccttcagtatctaagtatcaaggactgtgcgagtctacttgaacttcccactctcccatcacttatggaactgaacatatcaaattgctcaggcctgggagctacaatccctatgttcccagcccttcagtatctaagtatcaaggactgtgcgagtctacttgaacttcccactctcccatcacttatggaactgaacatatcaaattgctcaggcctgggagctattattcctatgtctccaaccctttgcgagctaagtatcaacaaatgtgcaagtctacttgaacttcctacgatggaatcactttggaaactcgagatatcacactgcccaagcctacgtgcagttggtcttttcccagaactcagtgtactgaaactgtctggtccatttaaaactgaggtgtttgatagttggctgagcttgaactcgccactcgaacacttggagatttattcttctccattggtgagcatcccgcttaggccccagtatttgacatcacttgctaccctcagattattattctgttatgatctgcaatactgtgatggacttgtcagtctcacctcgctcagagaactaaatgtaatggagtgtcccaagctcaatttacatcgttcgctcccatgcaatctgcaaaagtttgagctttatggtagatag

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Protein seq

MAGVFASMAIEWAIDKLYSLLPACLVSTPASSSSSAAPAESEDLEVLKRLERTMHRIHATLHDAEEQWNIREETAKLRLKELKKVAYDAEDVVDEYGYEMTRHKVEAFEQSARANRSGKRRREEVDGTIQNISDIVPVPSELATRARKIMDMFNEIKDYASKFSLSENDGVRRSIPDMHQVRQTSSMVFEQSIIGRGSIKDTVIEKMLSQNKSSTPESHVSVLGIVGMPGVGKTTLAQLVYNNTEVCKSFDVRVWVCVSENFDVNDITKRIISATNKFPHGETIANLQEKLVKEIQDKRFLLVLDDVWNERRDYWEMFRLPMLTTKLCKIIVTTRSQNVARLVQTMDSCELSCLDSNDSWSLFKQTALLDEEHANNPSLQEIGKDIVSRCKGLPLAIKTIGSMLRYEPDETKWKDILESDLWDLEQSQNEVLPALELSYKQMPISHSAYKMHDLIHDLACFLAGDEFVRTEGNSQVEISPNARYLSVVPTSPWEISTINISDSSDSLKAIIVICHGLDEIVIPDDIFLKFKRLRVFSLNGAAPTNLLPDSAGNLKLLRFLRWRCSIDCQIMQLPKSVFQLFNLHTLELMKPAFDLYTPIVSGIGRLIKLETLPPLEILSGYDSNLSELRNIRKVRSLSLKGLDYVCSVEDAMEADIPSKIHLQSLNLDFTSSHHQQLQQHKPGAVSHKELLESLQPCHTLRDLSIYGYRGLSFPCWVGNTSFSKLTKVVLSKCESECLPALGELPSLESLEISRMYNLRFIGREFCCLNQSVKVFRSLVNLSFSWMYELSEWSGVKDGDFACLETLLLCQDNKLRFLPLVPFSSLVTCRLSNCGNLVTVPVSYALCDLYINDCASLIELPSLPSLITLEISNCSSLGATIPMFPALQYLSIKDCASLLELPTLPSLMELNISNCSGLGATIPMFPALQYLSIKDCASLLELPTLPSLMELNISNCSGLGATIPMFPALQYLSIKDCASLLELPTLPSLMELNISNCSGLGAIIPMSPTLCELSINKCASLLELPTMESLWKLEISHCPSLRAVGLFPELSVLKLSGPFKTEVFDSWLSLNSPLEHLEIYSSPLVSIPLRPQYLTSLATLRLLFCYDLQYCDGLVSLTSLRELNVMECPKLNLHRSLPCNLQKFELYGR

Function Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLiXu_11g0014120 OsLiXu_11g0014120.01 Chr11 20294012 20297834 - NAM
CDS seq

atggctggagtattcgcctccatggctatcgaatgggcgatcgacaagctctattccttgctgccagcatgtctggtatcaacacctgcatcgtcatcgtcttccgcagcgccagctgaaagcgaggaccttgaggttctgaagaggcttgagagaacaatgcacaggatccatgcgacactgcacgatgcagaggaacagtggaacatcagggaggaaacagccaagctgcggctcaaggaactgaagaaggtggcctacgacgcggaggacgtggtggatgagtacgggtacgagatgacacgccataaagtggaggcatttgagcaatctgcaagggctaatcgcagcggcaagcgcaggcgcgaagaggttgatggcacaatccagaacatttcggacatagtcccagtaccatctgagttagctactcgagcaaggaaaatcatggacatgtttaatgaaatcaaagattacgctagtaaattcagtttgtctgagaatgatggagtgcggcgatctattcctgatatgcaccaagtgcggcagactagctctatggtatttgagcagagcattattggcagaggaagtatcaaggacactgtaattgaaaagatgctgtcccaaaacaaaagcagtacacctgaaagccatgtttcagtcctgggcatagttggtatgccaggagtaggcaagacaactctagcgcagcttgtgtacaacaacacagaagtatgcaaatcttttgatgtccgtgtttgggtctgtgtatcagagaacttcgatgtaaatgacataacaaaaagaatcatctcagcaacaaataagtttcctcatggtgaaacaattgcaaatcttcaggaaaaactggtaaaagaaattcaggataagaggtttttgctagtattggatgacgtatggaatgaacgaagagactactgggaaatgttccgtttgccaatgttgacaacaaagctttgcaaaattatagtaactactcgaagtcagaatgttgctagattggttcaaacaatggattcctgtgaattaagctgcttagattctaatgatagctggtcattgttcaaacaaactgcccttttggatgaagaacatgcaaataatccaagtctacaagaaattggcaaggatattgtttcaaggtgtaaagggttgccgttggcaatcaagactattggaagcatgctgcgctacgaaccagatgaaactaagtggaaggatatcttagagagtgatctatgggacttagagcaatcacagaatgaggtactgccagcactggagctgagctataagcagatgcccatttctcatagtgcatacaagatgcatgacctcatccatgatcttgcatgctttcttgctggagatgagtttgttagaactgaaggtaattcacaagttgaaatctcaccaaatgctcggtatttgtcagtagtaccaacatcaccctgggaaattagtactatcaatatttcagattcttcagattcactcaaagctatcattgtgatttgtcatggacttgacgaaattgtaatcccagatgacatattcctaaagttcaaacggctgcgcgtctttagcttgaatggagctgcgcctaccaatctattaccagactcagctggcaacctaaaactcttacgctttttgaggtggagatgcagcatagattgccagatcatgcaactacctaaatcggtattccagctttttaatttacataccctagaactgatgaagccagcttttgatctgtatacaccaattgtaagtggaatcggccgactaattaagctagaaactttgcctccacttgaaatactaagtggatatgacagtaacttaagtgagctgaggaatataagaaaagtaaggagcctgagtctaaaagggctggattatgtatgtagtgttgaagatgcaatggaagctgatatcccgagtaaaattcacctccaatcactcaacttggattttacgagctcacaccatcaacaactgcagcagcataagcctggtgcagtatctcataaggaactattggagagtttgcaaccatgtcacaccctcagagatctgagtatatatggttacagaggcctgagcttcccgtgttgggttggtaacacttccttttccaagttgacaaaagtagtgttatccaagtgtgaatcggaatgccttccagcacttggtgagttgccttcccttgagtctttggagatttccagaatgtataatcttcgattcattggacgagagttttgctgcctaaatcaaagtgttaaagttttccgctcattggtgaacttgagtttttcctggatgtatgaattgtcagaatggtctggagtgaaggacggtgatttcgcttgcttagagactctcttgttatgccaggacaataaactaagatttcttccattggtgcccttctcgtccttggttacatgtaggttatcgaattgtggtaatctggtaacagttccagtatcctatgccctttgtgacctatatataaatgattgtgcaagtcttattgaacttccttctctcccatcccttattacgctggagatatcaaactgctcaagcctaggagctacaatccctatgttcccagcccttcagtatctaagtatcaaggactgtgcgagtctacttgaacttcccactctcccatcacttatggaactgaacatatcaaattgctcaggcctgggagctacaatccctatgttcccagcccttcagtatctaagtatcaaggactgtgcgagtctacttgaacttcccactctcccatcacttatggaactgaacatatcaaattgctcaggcctgggagctacaatccctatgttcccagcccttcagtatctaagtatcaaggactgtgcgagtctacttgaacttcccactctcccatcacttatggaactgaacatatcaaattgctcaggcctgggagctattattcctatgtctccaaccctttgcgagctaagtatcaacaaatgtgcaagtctacttgaacttcctacgatggaatcactttggaaactcgagatatcacactgcccaagcctacgtgcagttggtcttttcccagaactcagtgtactgaaactgtctggtccatttaaaactgaggtgtttgatagttggctgagcttgaactcgccactcgaacacttggagatttattcttctccattggtgagcatcccgcttaggccccagtatttgacatcacttgctaccctcagattattattctgttatgatctgcaatactgtgatggacttgtcagtctcacctcgctcagagaactaaatgtaatggagtgtcccaagctcaatttacatcgttcgctcccatgcaatctgcaaaagtttgagctttatggtagatag

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Protein seq

MAGVFASMAIEWAIDKLYSLLPACLVSTPASSSSSAAPAESEDLEVLKRLERTMHRIHATLHDAEEQWNIREETAKLRLKELKKVAYDAEDVVDEYGYEMTRHKVEAFEQSARANRSGKRRREEVDGTIQNISDIVPVPSELATRARKIMDMFNEIKDYASKFSLSENDGVRRSIPDMHQVRQTSSMVFEQSIIGRGSIKDTVIEKMLSQNKSSTPESHVSVLGIVGMPGVGKTTLAQLVYNNTEVCKSFDVRVWVCVSENFDVNDITKRIISATNKFPHGETIANLQEKLVKEIQDKRFLLVLDDVWNERRDYWEMFRLPMLTTKLCKIIVTTRSQNVARLVQTMDSCELSCLDSNDSWSLFKQTALLDEEHANNPSLQEIGKDIVSRCKGLPLAIKTIGSMLRYEPDETKWKDILESDLWDLEQSQNEVLPALELSYKQMPISHSAYKMHDLIHDLACFLAGDEFVRTEGNSQVEISPNARYLSVVPTSPWEISTINISDSSDSLKAIIVICHGLDEIVIPDDIFLKFKRLRVFSLNGAAPTNLLPDSAGNLKLLRFLRWRCSIDCQIMQLPKSVFQLFNLHTLELMKPAFDLYTPIVSGIGRLIKLETLPPLEILSGYDSNLSELRNIRKVRSLSLKGLDYVCSVEDAMEADIPSKIHLQSLNLDFTSSHHQQLQQHKPGAVSHKELLESLQPCHTLRDLSIYGYRGLSFPCWVGNTSFSKLTKVVLSKCESECLPALGELPSLESLEISRMYNLRFIGREFCCLNQSVKVFRSLVNLSFSWMYELSEWSGVKDGDFACLETLLLCQDNKLRFLPLVPFSSLVTCRLSNCGNLVTVPVSYALCDLYINDCASLIELPSLPSLITLEISNCSSLGATIPMFPALQYLSIKDCASLLELPTLPSLMELNISNCSGLGATIPMFPALQYLSIKDCASLLELPTLPSLMELNISNCSGLGATIPMFPALQYLSIKDCASLLELPTLPSLMELNISNCSGLGAIIPMSPTLCELSINKCASLLELPTMESLWKLEISHCPSLRAVGLFPELSVLKLSGPFKTEVFDSWLSLNSPLEHLEIYSSPLVSIPLRPQYLTSLATLRLLFCYDLQYCDGLVSLTSLRELNVMECPKLNLHRSLPCNLQKFELYGR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.0 0.066785

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0492500 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g30110 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0492500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0014510 RBH 0.0 0.000000 0.735389
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0014470 RBH 0.0 0.859638 0.085010
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0014410 SBH 0.0 0.0 0.214272
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0014200 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0014480 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0271500 RBH 0.041255 1.6839085 0.074328
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0014750 RBH 0.0 0.041382 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0284900 RBH 0.0043935 0.1196365 0.017945
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0014670 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0014650 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0014290 RBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0070780 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0014460 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G014260 RBH 0.0 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0014520 RBH 0.0 2.186508 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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