Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0492500 | OGI:11051700 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:17454145-17455221 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAATTTCAATCATAGACCTCTGAGCTAATTCATGGAGATATGAAACTGCAAGTTTTGCCTTATTTGCTCCATCACCATGTTGAAGTAACTCCAGTGGCTCCCACAGAAGAACCACATTTTCTTCATGAAGTATGTAATCTTTTGGAAACAAGGAGAGGGCAATAAAACATCGTTTCAAGTACATGGGCATCTGCTTATAGCTCAGCTCCAGTGCTGGCAGTACCTCATTCTGTGATTGCTCTAAGTCCCATAGATCACTCTCTAAGATATCCTTCCACTTAGTTTCATCTGGTTCGTAGCGCAGCATGCTTCCAATAGTCTTGATTGCCAACGGCAACCCTTTACACCTTGAAACAATATCCTTGCCAATTTCTTGTAGACTTGGATTATTTGCATGTTCTTCATCCAAAAGGGCAGTTTGTTTGAACAATGACCAGCTATCATTAGAATCTAAGCAGCTTAATTCACAGGAATCCATTGTTTGAACCAATCTAGCAACATTCTGACTTCGAGTAGTTACTATAATTTTGCAAAGCTTTGTTGTCAACATTGGCAAACGGAACATTTCCCAGTAGTCTCTTCGTTCATTCCATACGTCATCCAATACTAGCAAAAACCTCTTATCCTGAATTTCTTTTACATCGAAGTTCTCTGATACACAGACCCAAACACGGACATCAAAAGATTTGCATACTTCTGTGTTGTTGTACACAAGCTGCGCTAGAGTTGTCTTGCCTACTCCTGGCATACCAACTATGCCCAGGACTGAAACATGGCTTTCAGGTGTACTGCTTTTGTTTTGGGACAGCATCTTTTCAATTACAGTGTCCTTGATACTTCCTCTGCCAATAATGCTCTGCTCAAATACCATAGAGCTAGTCTGCCGCACTTGGTGCATATCAGGAATAGATCGCCGCACTCCATCATTCTCAGACAAACTGAATTTACTAGCGTAATCTTTGATTTCATTAAACATGTCCATGATTTTCCTTGCTCGAGTAGCTAACTCAGATGGTACTGGGACTATGTCCGAAATGTTCTGGATTGTGCCATCAACCTTCATGTTGGAAAACAT
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| CDS seq | ATGTTTTCCAACATGAAGGTTGATGGCACAATCCAGAACATTTCGGACATAGTCCCAGTACCATCTGAGTTAGCTACTCGAGCAAGGAAAATCATGGACATGTTTAATGAAATCAAAGATTACGCTAGTAAATTCAGTTTGTCTGAGAATGATGGAGTGCGGCGATCTATTCCTGATATGCACCAAGTGCGGCAGACTAGCTCTATGGTATTTGAGCAGAGCATTATTGGCAGAGGAAGTATCAAGGACACTGTAATTGAAAAGATGCTGTCCCAAAACAAAAGCAGTACACCTGAAAGCCATGTTTCAGTCCTGGGCATAGTTGGTATGCCAGGAGTAGGCAAGACAACTCTAGCGCAGCTTGTGTACAACAACACAGAAGTATGCAAATCTTTTGATGTCCGTGTTTGGGTCTGTGTATCAGAGAACTTCGATGTAAAAGAAATTCAGGATAAGAGGTTTTTGCTAGTATTGGATGACGTATGGAATGAACGAAGAGACTACTGGGAAATGTTCCGTTTGCCAATGTTGACAACAAAGCTTTGCAAAATTATAGTAACTACTCGAAGTCAGAATGTTGCTAGATTGGTTCAAACAATGGATTCCTGTGAATTAAGCTGCTTAGATTCTAATGATAGCTGGTCATTGTTCAAACAAACTGCCCTTTTGGATGAAGAACATGCAAATAATCCAAGTCTACAAGAAATTGGCAAGGATATTGTTTCAAGGTGTAAAGGGTTGCCGTTGGCAATCAAGACTATTGGAAGCATGCTGCGCTACGAACCAGATGAAACTAAGTGGAAGGATATCTTAGAGAGTGATCTATGGGACTTAGAGCAATCACAGAATGAGGTACTGCCAGCACTGGAGCTGAGCTATAAGCAGATGCCCATGTACTTGAAACGATGTTTTATTGCCCTCTCCTTGTTTCCAAAAGATTACATACTTCATGAAGAAAATGTGGTTCTTCTGTGGGAGCCACTGGAGTTACTTCAACATGGTGATGGAGCAAATAAGGCAAAACTTGCAGTTTCATATCTCCATGAATTAGCTCAGAGGTCTATGATTGAAATTTAG
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| Protein seq | MFSNMKVDGTIQNISDIVPVPSELATRARKIMDMFNEIKDYASKFSLSENDGVRRSIPDMHQVRQTSSMVFEQSIIGRGSIKDTVIEKMLSQNKSSTPESHVSVLGIVGMPGVGKTTLAQLVYNNTEVCKSFDVRVWVCVSENFDVKEIQDKRFLLVLDDVWNERRDYWEMFRLPMLTTKLCKIIVTTRSQNVARLVQTMDSCELSCLDSNDSWSLFKQTALLDEEHANNPSLQEIGKDIVSRCKGLPLAIKTIGSMLRYEPDETKWKDILESDLWDLEQSQNEVLPALELSYKQMPMYLKRCFIALSLFPKDYILHEENVVLLWEPLELLQHGDGANKAKLAVSYLHELAQRSMIEI |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0492500 | OsNip_11t0492500-00 | Chr11 | 17454145 | 17455221 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTTTCCAACATGAAGGTTGATGGCACAATCCAGAACATTTCGGACATAGTCCCAGTACCATCTGAGTTAGCTACTCGAGCAAGGAAAATCATGGACATGTTTAATGAAATCAAAGATTACGCTAGTAAATTCAGTTTGTCTGAGAATGATGGAGTGCGGCGATCTATTCCTGATATGCACCAAGTGCGGCAGACTAGCTCTATGGTATTTGAGCAGAGCATTATTGGCAGAGGAAGTATCAAGGACACTGTAATTGAAAAGATGCTGTCCCAAAACAAAAGCAGTACACCTGAAAGCCATGTTTCAGTCCTGGGCATAGTTGGTATGCCAGGAGTAGGCAAGACAACTCTAGCGCAGCTTGTGTACAACAACACAGAAGTATGCAAATCTTTTGATGTCCGTGTTTGGGTCTGTGTATCAGAGAACTTCGATGTAAAAGAAATTCAGGATAAGAGGTTTTTGCTAGTATTGGATGACGTATGGAATGAACGAAGAGACTACTGGGAAATGTTCCGTTTGCCAATGTTGACAACAAAGCTTTGCAAAATTATAGTAACTACTCGAAGTCAGAATGTTGCTAGATTGGTTCAAACAATGGATTCCTGTGAATTAAGCTGCTTAGATTCTAATGATAGCTGGTCATTGTTCAAACAAACTGCCCTTTTGGATGAAGAACATGCAAATAATCCAAGTCTACAAGAAATTGGCAAGGATATTGTTTCAAGGTGTAAAGGGTTGCCGTTGGCAATCAAGACTATTGGAAGCATGCTGCGCTACGAACCAGATGAAACTAAGTGGAAGGATATCTTAGAGAGTGATCTATGGGACTTAGAGCAATCACAGAATGAGGTACTGCCAGCACTGGAGCTGAGCTATAAGCAGATGCCCATGTACTTGAAACGATGTTTTATTGCCCTCTCCTTGTTTCCAAAAGATTACATACTTCATGAAGAAAATGTGGTTCTTCTGTGGGAGCCACTGGAGTTACTTCAACATGGTGATGGAGCAAATAAGGCAAAACTTGCAGTTTCATATCTCCATGAATTAGCTCAGAGGTCTATGATTGAAATTTAG
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| Protein seq | MFSNMKVDGTIQNISDIVPVPSELATRARKIMDMFNEIKDYASKFSLSENDGVRRSIPDMHQVRQTSSMVFEQSIIGRGSIKDTVIEKMLSQNKSSTPESHVSVLGIVGMPGVGKTTLAQLVYNNTEVCKSFDVRVWVCVSENFDVKEIQDKRFLLVLDDVWNERRDYWEMFRLPMLTTKLCKIIVTTRSQNVARLVQTMDSCELSCLDSNDSWSLFKQTALLDEEHANNPSLQEIGKDIVSRCKGLPLAIKTIGSMLRYEPDETKWKDILESDLWDLEQSQNEVLPALELSYKQMPMYLKRCFIALSLFPKDYILHEENVVLLWEPLELLQHGDGANKAKLAVSYLHELAQRSMIEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29980 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014510 | RBH | 0.0 | 0.000000 | 0.735389 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014470 | RBH | 0.0 | 0.859638 | 0.085010 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014410 | RBH | 0.0 | 0.0 | 0.214272 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014480 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0271500 | RBH | 0.041255 | 1.6839085 | 0.074328 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014750 | RBH | 0.0 | 0.041382 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0284900 | RBH | 0.0043935 | 0.1196365 | 0.017945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014670 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014650 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014290 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014120 | RBH | 0.000000 | 0.0 | 0.066785 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014260 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014520 | RBH | 0.0 | 2.186508 | 0.0 |
