Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0010130 | OGI:11029120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:9476595-9478129 | ||||||||
| Gene Symbol | MSL38, OsMSL38 | ||||||||||
| DNA seq | atggggccttgcccaccaagttcttcagatAaaaaaagttgccaaaatgtcccaccggaaaaactcagctccacgagtttctgccatcCAcaatttccgcagcacttgctttcacatccagcatatgcaatgaatttccttttcccgccgtttcctcactatcctccatactcacaaaatttccaatatgctgttccaccacaatatgctccaaactcattaccgccacctgatggagcaatgccatcaccatatgtaccagctacagttatgccatccaaggcaccctctgatcaaggcaccccacattcagtaactggtccaggacaacaagatgatggcgatgctgaacctgagaggactgctaggcgactagcatggatagaagaggaagacgttagattggtaagcatcctcttcctttttctatctctaatttttggacattgaaaatggtatcctaacatctccgtgctggaactacagataagcacttggttgattaacttcaagactgacaagtattgggataaggttgcagcagaatacaacagtgcaacccccggagctcggagaagggaagtgaagcatctgaagaaccgcaggcagaggatgatcaataaggtggcacatttcaatgattgttggtactgggtcatggcaaaatatcctagcggccagtcagagggcatgcaacagatggacaaaacttggctgatgtataataaggaagcacaagtgatgtatgatgtatctcgaagaagcgaagcataagttcaccttcggccattgctggaacgctgtttgggaccaacccaagtggaaagaatacatctcttctttctccacaaaaagaacgatgcaatctgagtctggtggttacctgtcatctccggaagactctgaagatatggaagaaggaaaatgcttagtggatcctctggacatgcttaccaagaaccgcgaagatatgacagaagtccagccgtctgtctcaaatcaaaagaagcaatcagaactattgacagctgatgcgtcgtggcctattgaatttcagcttgggaagcaccaattgatgactggaacaccaaaattgaacgaacatcagcaggggatggtagtgagggatgaactgcttgaaatagaattgcgtccacaagattatgaggtgctagacaatgagagagtggcaagggaagatgaacctaaaaaagaaacacagcctcatcaaggtttcaaggcgcgaaaggtcagtcggaaacgtaaaggcaaggaatcatcttcctcgtgtgaggtgcacgaagacatcaaacatgcgttatatcttcagaccatgcttaacaacgatcgtgagaagatgtcagaggtacagctccgcctgtcgaaagagcagcttgaattggcgagaataaagcaggatgaagcgaacgtaaagaaagaaacaacacttcacatgaaatacacagagctgttgctggcagacaattcaaggtttgatgagtttcagaaggcagagtattgttaggaaacgataa
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| CDS seq | atggggccttgcccaccaagttcttcagatAaaaaaagttgccaaaatgtcccaccggaaaaactcagctccacgagtttctgccatcCAcaatttccgcagcacttgctttcacatccagcatatgcaatgaatttccttttcccgccgtttcctcactatcctccatactcacaaaatttccaatatgctgttccaccacaatatgctccaaactcattaccgccacctgatggagcaatgccatcaccatatgtaccagctacagttatgccatccaaggcaccctctgatcaaggcaccccacattcagtaactggtccaggacaacaagatgatggcgatgctgaacctgagaggactgctaggcgactagcatggatagaagaggaagacgttagattgataagcacttggttgattaacttcaagactgacaagtattgggataaggttgcagcagaatacaacagtgcaacccccggagctcggagaagggaagtgaagcatctgaagaaccgcaggcagaggatgatcaataaggtggcacatttcaatgattgttggtactgggtcatggcaaaatatcctagcggccagtcagagggcatgcaacagatggacaaaacttggctgatgtataataaggaagcacaagtgatgtatgatcataagttcaccttcggccattgctggaacgctgtttgggaccaacccaagtggaaagaatacatctcttctttctccacaaaaagaacgatgcaatctgagtctggtggttacctgtcatctccggaagactctgaagatatggaagaaggaaaatgcttagtggatcctctggacatgcttaccaagaaccgcgaagatatgacagaagtccagccgtctgtctcaaatcaaaagaagcaatcagaactattgacagctgatgcgtcgtggcctattgaatttcagcttgggaagcaccaattgatgactggaacaccaaaattgaacgaacatcagcaggggatggtagtgagggatgaactgcttgaaatagaattgcgtccacaagattatgaggtgctagacaatgagagagtggcaagggaagatgaacctaaaaaagaaacacagcctcatcaaggtttcaaggcgcgaaaggtcagtcggaaacgtaaaggcaaggaatcatcttcctcgtgtgaggtgcacgaagacatcaaacatgcgttatatcttcagaccatgcttaacaacgatcgtgagaagatgtcagaggtacagctccgcctgtcgaaagagcagcttgaattggcgagaataaagcaggatgaagcgaacgtaaagaaagaaacaacacttcacatgaaatacacagagctgttgctggcagacaattcaaggtttgatgagtttcagaaggcagagtattgttag
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| Protein seq | MGPCPPSSSDKKSCQNVPPEKLSSTSFCHPQFPQHLLSHPAYAMNFLFPPFPHYPPYSQNFQYAVPPQYAPNSLPPPDGAMPSPYVPATVMPSKAPSDQGTPHSVTGPGQQDDGDAEPERTARRLAWIEEEDVRLISTWLINFKTDKYWDKVAAEYNSATPGARRREVKHLKNRRQRMINKVAHFNDCWYWVMAKYPSGQSEGMQQMDKTWLMYNKEAQVMYDHKFTFGHCWNAVWDQPKWKEYISSFSTKRTMQSESGGYLSSPEDSEDMEEGKCLVDPLDMLTKNREDMTEVQPSVSNQKKQSELLTADASWPIEFQLGKHQLMTGTPKLNEHQQGMVVRDELLEIELRPQDYEVLDNERVAREDEPKKETQPHQGFKARKVSRKRKGKESSSSCEVHEDIKHALYLQTMLNNDREKMSEVQLRLSKEQLELARIKQDEANVKKETTLHMKYTELLLADNSRFDEFQKAEYC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0010130 | OsLima_11g0010130.01 | Chr11 | 9476595 | 9478129 | + | NAM | ||
| CDS seq | atggggccttgcccaccaagttcttcagatAaaaaaagttgccaaaatgtcccaccggaaaaactcagctccacgagtttctgccatcCAcaatttccgcagcacttgctttcacatccagcatatgcaatgaatttccttttcccgccgtttcctcactatcctccatactcacaaaatttccaatatgctgttccaccacaatatgctccaaactcattaccgccacctgatggagcaatgccatcaccatatgtaccagctacagttatgccatccaaggcaccctctgatcaaggcaccccacattcagtaactggtccaggacaacaagatgatggcgatgctgaacctgagaggactgctaggcgactagcatggatagaagaggaagacgttagattgataagcacttggttgattaacttcaagactgacaagtattgggataaggttgcagcagaatacaacagtgcaacccccggagctcggagaagggaagtgaagcatctgaagaaccgcaggcagaggatgatcaataaggtggcacatttcaatgattgttggtactgggtcatggcaaaatatcctagcggccagtcagagggcatgcaacagatggacaaaacttggctgatgtataataaggaagcacaagtgatgtatgatcataagttcaccttcggccattgctggaacgctgtttgggaccaacccaagtggaaagaatacatctcttctttctccacaaaaagaacgatgcaatctgagtctggtggttacctgtcatctccggaagactctgaagatatggaagaaggaaaatgcttagtggatcctctggacatgcttaccaagaaccgcgaagatatgacagaagtccagccgtctgtctcaaatcaaaagaagcaatcagaactattgacagctgatgcgtcgtggcctattgaatttcagcttgggaagcaccaattgatgactggaacaccaaaattgaacgaacatcagcaggggatggtagtgagggatgaactgcttgaaatagaattgcgtccacaagattatgaggtgctagacaatgagagagtggcaagggaagatgaacctaaaaaagaaacacagcctcatcaaggtttcaaggcgcgaaaggtcagtcggaaacgtaaaggcaaggaatcatcttcctcgtgtgaggtgcacgaagacatcaaacatgcgttatatcttcagaccatgcttaacaacgatcgtgagaagatgtcagaggtacagctccgcctgtcgaaagagcagcttgaattggcgagaataaagcaggatgaagcgaacgtaaagaaagaaacaacacttcacatgaaatacacagagctgttgctggcagacaattcaaggtttgatgagtttcagaaggcagagtattgttag
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| Protein seq | MGPCPPSSSDKKSCQNVPPEKLSSTSFCHPQFPQHLLSHPAYAMNFLFPPFPHYPPYSQNFQYAVPPQYAPNSLPPPDGAMPSPYVPATVMPSKAPSDQGTPHSVTGPGQQDDGDAEPERTARRLAWIEEEDVRLISTWLINFKTDKYWDKVAAEYNSATPGARRREVKHLKNRRQRMINKVAHFNDCWYWVMAKYPSGQSEGMQQMDKTWLMYNKEAQVMYDHKFTFGHCWNAVWDQPKWKEYISSFSTKRTMQSESGGYLSSPEDSEDMEEGKCLVDPLDMLTKNREDMTEVQPSVSNQKKQSELLTADASWPIEFQLGKHQLMTGTPKLNEHQQGMVVRDELLEIELRPQDYEVLDNERVAREDEPKKETQPHQGFKARKVSRKRKGKESSSSCEVHEDIKHALYLQTMLNNDREKMSEVQLRLSKEQLELARIKQDEANVKKETTLHMKYTELLLADNSRFDEFQKAEYC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0282700 | SBH | 0.0 | 0.0 | 0.740802 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14160 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0282700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005310 | SBH | 0.326245 | 0.0 | 1.270847 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005340 | SBH | 0.032422 | 0.0 | 0.548495 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005530 | SBH | 0.0 | 0.0 | 3.635149 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010000 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0158300 | SBH | 0.3489185 | 2.1780615 | 1.24363 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010020 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0146400 | RBH | 0.0042575 | 0 | 0.28033 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005510 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0066520 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0010020 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005590 | SBH | 0.087736 | 0.866308 | 0.478480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005470 | SBH | 0.0 | 0.0 | 0.878473 |
