Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0005340 | OGI:09026910 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:9131991-9133859 | ||||||||
| Gene Symbol | MSL38, OsMSL38 | ||||||||||
| DNA seq | caagtatttgcaatttgccttcaaccatcactccaagacaagccactagttcattctttgcacaggtcagttgcaaattagataagccactaatagctaaatacatattgatccatcacttccacgattcaatcagtactaatctctgttaaatcttgctagagatgattaaacctaacacagacacaggtgttagtggaggcaatccttcagttaagtagaacaaaacgatctattactagttgttgggatgatatttgcacagaaatgcatgcttaagataaattgttgcgagggcactaattgacatccttgctaaatagtatccctcctatatgcttcaatgctttctcatactctgccttctgaaactcatcaaaccttgaagtgtctgccagcaacagctctgtgtaTttcatgtaaagtgttgtttctttctttacattcgcttcatcctgctttattctggccaattcaagctgctctttcgagaggcagagctgtacctctgacattttctcacgatcattgttaagcatggtctgaagatataatgcatgtttgatgtcttcctgcacctcacatgaagaagatgatgccttgcctttacgtttccgattgacctttcgcaccttgaaaccttgatgaggctgtgtttcttttttaggttcatcttcccttgccactctctcattgtctagcacctcaaaatcttgtgggcccgattctttttcaagcatttcatccctcactgccaCcccctgctgatgttcgttcaattttgatgttccagtcatcaattggtgcctcccaagctgaaattcaataggccacgacgcatcagctgtcaatagttctaattgcttcttttgatttgagacagacggctggacttctgtcatatcttcatggttcttgggaagcatgtccagaggatccactaagcattttccttcttgcatatcttcagagtcttccgaagatgacacgtaaccaccggactcagatcgcatcactctttttgtggagaaagaagagatgtattctttccacttgggttggtcccaaacagcgttccagcaatggccaaaggtgaacttatgcttcgcttcttcgagatacatcacatgtgcttccttattatacatcagccaagttttgtccatctgttgcatgccctctgactggccgctaggatattttgccatgacccggcaccaacaatcattgaaatgtgccaccttattgatcatcctctgccagcggttcttcaaatgcttcacttcccttctccgagctccgggggttgcactgttgtattctgctgcaaccttatcccagtacttgtcagtcttgtagttaatcaaccaagtgcttatctgtagttccagcacggagatgttaggataccatttgcaatgtccaaaaattagaaatagaaaaaggaagaggaatgcttaccaatctaatgtcttcctcttctgtccatgctagtcacctagcagtcctctcaggttcagcatcgtcatcatcttgttgtcctggaccagttactgaatgtggggtgccttgatcagagggtgccttggatggcataactgtagctggtacatatggtgatggcatagctccatcaggtggcggtaatgagtatggagcatattgtggtggaacagcatattggaaattttgcgagtatggaggatagtgaggaaacggcgggaaagggaaattcattgcatatgctggatgtgaaagtaagtgctgcggaaattgtggatggcagaaactcgtggagctgggtttttctggtgggacattttggcaagtttttttatctgaataactactaggtgggtgaggccccat
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| CDS seq | atggggcctcacccacctagtagttattcagataaaaaaacttgccaaaatgtcccaccagaaaaacccagctccacgagtttctgccatccacaatttccgcagcacttactttcacatccagcatatgcaatgaatttccctttcccgccgtttcctcactatcctccatactcgcaaaatttccaatatgctgttccaccacaatatgctccatactcattaccgccacctgatggagctatgccatcaccatatgtaccagctacagttatgccatccaaggcaccctctgatcaaggcaccccacattcagtaactggtccaggacaacaagatgatgacgatgctgaacctgagaggactgctagcacttggttgattaactacaagactgacaagtactgggataaggttgcagcagaatacaacagtgcaacccccggagctcggagaagggaagtgaagcatttgaagaaccgctggcagaggatgatcaataaggtggcacatttcaatgattgttggtgccgggtcatggcaaaatatcctagcggccagtcagagggcatgcaacagatggacaaaacttggctgatgtataataaggaagcacatgtgatgtatctcgaagaagcgaagcataagttcacctttggccattgctggaacgctgtttgggaccaacccaagtggaaagaatacatctcttctttctccacaaaaagagtgatgcgatctgagtccggtggttacgtgtcatcttcggaagactctgaagatatgcaagaaggaaaatgcttagtggatcctctggacatgcttcccaagaaccatgaagatatgacagaagtccagccgtctgtctcaaatcaaaagaagcaattagaactattgacagctgatgcgtcgtggcctattgaatttcagcttgggaggcaccaattgatgactggaacatcaaaattgaacgaacatcagcaggggGtggcagtgagggatgaaatgcttgaaaaagaatcgggcccacaagattttgaggtgctagacaatgagagagtggcaagggaagatgaacctaaaaaagaaacacagcctcatcaaggtttcaaggtgcgaaaggtcaatcggaaacgtaaaggcaaggcatcatcttcttcatgtgaggtgcaggaagacatcaaacatgcattatatcttcagaccatgcttaacaatgatcgtgagaaaatgtcagaggtacagctctgcctctcgaaagagcagcttgaattggccagaataaagcaggatgaagcgaatgtaaagaaagaaacaacactttacatgaaAtacacagagctgttgctggcagacacttcaaggtttgatgagtttcagaaggcagagtatgagaaagcattgaagcatataggagggatactatttagcaaggatgtcaattag
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| Protein seq | MGPHPPSSYSDKKTCQNVPPEKPSSTSFCHPQFPQHLLSHPAYAMNFPFPPFPHYPPYSQNFQYAVPPQYAPYSLPPPDGAMPSPYVPATVMPSKAPSDQGTPHSVTGPGQQDDDDAEPERTASTWLINYKTDKYWDKVAAEYNSATPGARRREVKHLKNRWQRMINKVAHFNDCWCRVMAKYPSGQSEGMQQMDKTWLMYNKEAHVMYLEEAKHKFTFGHCWNAVWDQPKWKEYISSFSTKRVMRSESGGYVSSSEDSEDMQEGKCLVDPLDMLPKNHEDMTEVQPSVSNQKKQLELLTADASWPIEFQLGRHQLMTGTSKLNEHQQGVAVRDEMLEKESGPQDFEVLDNERVAREDEPKKETQPHQGFKVRKVNRKRKGKASSSSCEVQEDIKHALYLQTMLNNDREKMSEVQLCLSKEQLELARIKQDEANVKKETTLYMKYTELLLADTSRFDEFQKAEYEKALKHIGGILFSKDVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0005340 | OsKeNa_09g0005340.01 | Chr09 | 9131991 | 9133859 | - | NAM | ||
| CDS seq | atggggcctcacccacctagtagttattcagataaaaaaacttgccaaaatgtcccaccagaaaaacccagctccacgagtttctgccatccacaatttccgcagcacttactttcacatccagcatatgcaatgaatttccctttcccgccgtttcctcactatcctccatactcgcaaaatttccaatatgctgttccaccacaatatgctccatactcattaccgccacctgatggagctatgccatcaccatatgtaccagctacagttatgccatccaaggcaccctctgatcaaggcaccccacattcagtaactggtccaggacaacaagatgatgacgatgctgaacctgagaggactgctagcacttggttgattaactacaagactgacaagtactgggataaggttgcagcagaatacaacagtgcaacccccggagctcggagaagggaagtgaagcatttgaagaaccgctggcagaggatgatcaataaggtggcacatttcaatgattgttggtgccgggtcatggcaaaatatcctagcggccagtcagagggcatgcaacagatggacaaaacttggctgatgtataataaggaagcacatgtgatgtatctcgaagaagcgaagcataagttcacctttggccattgctggaacgctgtttgggaccaacccaagtggaaagaatacatctcttctttctccacaaaaagagtgatgcgatctgagtccggtggttacgtgtcatcttcggaagactctgaagatatgcaagaaggaaaatgcttagtggatcctctggacatgcttcccaagaaccatgaagatatgacagaagtccagccgtctgtctcaaatcaaaagaagcaattagaactattgacagctgatgcgtcgtggcctattgaatttcagcttgggaggcaccaattgatgactggaacatcaaaattgaacgaacatcagcaggggGtggcagtgagggatgaaatgcttgaaaaagaatcgggcccacaagattttgaggtgctagacaatgagagagtggcaagggaagatgaacctaaaaaagaaacacagcctcatcaaggtttcaaggtgcgaaaggtcaatcggaaacgtaaaggcaaggcatcatcttcttcatgtgaggtgcaggaagacatcaaacatgcattatatcttcagaccatgcttaacaatgatcgtgagaaaatgtcagaggtacagctctgcctctcgaaagagcagcttgaattggccagaataaagcaggatgaagcgaatgtaaagaaagaaacaacactttacatgaaAtacacagagctgttgctggcagacacttcaaggtttgatgagtttcagaaggcagagtatgagaaagcattgaagcatataggagggatactatttagcaaggatgtcaattag
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| Protein seq | MGPHPPSSYSDKKTCQNVPPEKPSSTSFCHPQFPQHLLSHPAYAMNFPFPPFPHYPPYSQNFQYAVPPQYAPYSLPPPDGAMPSPYVPATVMPSKAPSDQGTPHSVTGPGQQDDDDAEPERTASTWLINYKTDKYWDKVAAEYNSATPGARRREVKHLKNRWQRMINKVAHFNDCWCRVMAKYPSGQSEGMQQMDKTWLMYNKEAHVMYLEEAKHKFTFGHCWNAVWDQPKWKEYISSFSTKRVMRSESGGYVSSSEDSEDMQEGKCLVDPLDMLPKNHEDMTEVQPSVSNQKKQLELLTADASWPIEFQLGRHQLMTGTSKLNEHQQGVAVRDEMLEKESGPQDFEVLDNERVAREDEPKKETQPHQGFKVRKVNRKRKGKASSSSCEVQEDIKHALYLQTMLNNDREKMSEVQLCLSKEQLELARIKQDEANVKKETTLYMKYTELLLADTSRFDEFQKAEYEKALKHIGGILFSKDVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.032422 | 0.0 | 0.548495 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0317700 | RBH | 0.321803 | 0.0 | 0.787395 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14880 | RBH | 0.217620 | 0.0 | 0.202691 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0317700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005310 | RBH | 0.326245 | 0.0 | 1.270847 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005530 | RBH | 0.0 | 0.0 | 3.635149 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005370 | RBH | 0.000000 | 0.051545 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005580 | RBH | 0.581254 | 1.917326 | 4.798226 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0158300 | RBH | 0.3489185 | 2.1780615 | 1.24363 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005740 | RBH | 0.0 | 0.0 | 0.278638 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0137300 | RBH | 0.300332 | 1.6103375 | 2.894949 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005370 | RBH | 0.0 | 3.521740 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005260 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005360 | RBH | 0.066069 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005590 | RBH | 0.087736 | 0.866308 | 0.478480 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005470 | RBH | 0.0 | 0.0 | 0.878473 |
