Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0006900 | OGI:11017320 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:5741452-5745154 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcagttagccaacatccaatccaacacacacgctaattaatgacgggttgatcttcagttcagtggagttgatcttcagttaccaagtaccctgacctggagtgtgatcgagccatacggtggttaactccgatgtgctgttaaatgccagcagatacaactgtgtatttggagagattgaggatgtgctgagctttgttccctctgaatctgctgcatatgctatggactctcatgaaaacatcagttccgagctgcggaaaggagcaggtgattgtgagtgaaaccatcaaagatcattgaaaatcaataatgtagcatactggatacagcgtttactaagatttgagaaaccaaccaggtgtaccttgctatatccatgccgaccacactagtttgacctgatcaatctcatttcggccatgaaaaaaatcttgtaagttgatcaagggctttgattttgccacctgatattcacccccaactgcttgtcttgctaatgcagcagctatattaataaattgtctgcaaattgcacaaataaagtcaacacttccattagcgaaatttcagttcgtctgaacggaaatcgttactatacgatgaaagatttgagcactaagaaaaagggacgtcctgatgatgatcatgtgagaatcctataagaaatgcgttacaagttcgcctttttgtgcaatcacagttgctaaaatgttcctttttttttctgtagtactataacagtgctctactaccgctattatcaccagtacaagtgatctcaactattaatttataaattctattatcaattggtgaagtgttggtataaataaatttgaccgatttgattagaaaaaatagtctatattgagcattgtaaaacacctttttaggcatttgaatgaatattgatacagtaattagtactcccttcatactcgtaaaagaagtcatttttgacagcgacacggtctccaaaacataactttgacttattgtttctataaaaatatttattgaaaagtgatatatatatacttttataaaagtattttcaagacaaatctattcatataatttttacatttttcaaactcaacaatttgagagttatttatgatttatattcccaaggtttgacttaaacattgtcctaaacgactttctttatgagtacggagagagtacaaggatgcaaagcaaagtgaaatctgtactgaaaagagatactgtatatgattttttatgaatagcaagcgcaaaataacatcacgcaaacggcatgtttcaaccgggaaaagaaaagagtgacaatgtaaagtagatgaTttttttttaacttttcaccataaaagatttctccgtaaaatatggcatagcttggttgtgcacatacctttttttttatgtgagcgagtttcttctcgttctcatcagattgataccactgccgtaatccagggcacatataaatacatagattttcgagattagtgagttgctgtatactctctggcaatgaactgatgcccttgcatctatcaattttcagttccttgagtgaattgaggtcgcccatcctttcaggcagagagtgaattctgtggcaagcttccaattctagtgactgtagggaggtgatgttgcataatgtctcttgcaaatcattcagctttccgcaatcctttatcgtcaaccatttgagagaggtaagttctcctaaccattgtggtagcgatgtcatgctatcgcattgatacagatgtagtgatgttagtgaagtgagttgcctcatgctcccttgcaagtccagcagatcaggaaagccttctaaactcaggtgctgtacacatgtgatcccacccaacaatcttggctgctctgcctggtcgtcttttagttctttcagagagttgaggttgcccatcctttcaggtagagaaggagttctaacgcatttttccaatgttagtggctgcagggaggtgaggttgtcacatattgtctgttgcaaatcattcagatttttgcggtacctcaatctcaggttttggagagaggtgagttctaaccattgtggtagtgactccatgatactgcatccatccagatttagtgattgtagcgaagtaagctgcctcatgttcccttccaagtccttcagcttttgaaagcctactaaactcaggccctgtagacatgtgagctcacccaaccatcttggcagtccttctgccttttcattgtcttctaatatcagtgatttcaaggaggagagggctcggatgatctccggcgatgcgctgctaagatcaccgcatccatcgatatgtaaatgaagaaggggagggaggtggcaaagcaacacccactgatgcataggcaccagcttgcataaatggtctgacaggcaagccactgcagaagaggaggaagcagaggtgtggcatctctctacccgtgatgatagtacattatcactgagtattattgtccagttgccagcattaggtgggctcgatttcagccttactttggggcagtcagaaatttccatgtcttgaagcataggaaacatgacttgtgtttgaagatcgtccctgaaatccagctcttccaagctgtgcatagcccataggtgaaatcctatcaggcgaggaaaagctcccggtccaccatagatgcccttgtcaattcttctaatgccatgcatacgtccgagagtaatctctcctaggtttggtaactgaccaaaaggcggcaggctgttgcactttggtaaatcccacaaagtaatactgacgagattggggagatgatgtccagtattcattacccaggatggaaagctgatgctactataaccctctatcacaaacttctttaaagtgtttggtggtaccatctctcccaatacattcatgtcctccacaaacctatcagctcctccagtccactccaaattcagagaattaatgctttctttttcaatcaattttatactccgcgcctcttgtgtggacttcacattttcaagcctactgagctccaaaaattcatcaagaattgcatgttcaaggagaggaagattgctgctagattgaccttcaccggtgtgcaccacaaagtggggcaatgtgaagaggaagttggattgaggaagcttggcctcaaataatttgcagcccatcacatttagaaccttcagactttcctttttagtcaaacattctggaagccttgctagcatgctggaacctgaaaggttcaaggtatgtagcatcctcaggctgccaatactttcaggtatactacagagaattttattcttagacaagtccagatgttctagattggaaaaagtgctgatgctaccaatgaaactgtcaatttgatctgttgatgggctgccaaagacataatccatgcaccgtgctaaattcaagtatttcagatttgttagactgccaatgacttctggcaaccctatgagaggtaacttatcttgatggatttctccattctgcagtgacaaattcaaatattcgagtttggctaggccatgtaaagcttgaggtatacctaacaatgaactacaacatgataaatccagatgcaccaaattttttagcttctgaaaagaccttggtaattctactatcttatcagaacctgataagctcaagtacttgagttccat
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| CDS seq | atggaactcaagtacttgagcttatcaggttctgataagatagtagaattaccaaggtcttttcagaagctaaaaaatttggtgcatctggatttatcatgttgtagttcattgttaggtatacctcaagctttacatggcctagccaaactcgaatatttgaatttgtcactgcagaatggagaaatccatcaagataagttacctctcatagggttgccagaagtcattggcagtctaacaaatctgaaatacttgaatttagcacggtgcatggattatgtctttggcagcccatcaacagatcaaattgacagtttcattggtagcatcagcactttttccaatctagaacatctggacttgtctaagaataaaattctctgtagtatacctgaaagtattggcagcctgaggatgctacataccttgaacctttcaggttccagcatgctagcaaggcttccagaatgtttgactaaaaaggaaagtctgaaggttctaaatgtgatgggctgcaaattatttgaggccaagcttcctcaatccaacttcctcttcacattgccccactttgtggtgcacaccggtgaaggtcaatctagcagcaatcttcctctccttgaacatgcaattcttgatgaatttttggagctcagtaggcttgaaaatgtgaagtccacacaagaggcgcggagtataaaattgattgaaaaagaaagcattaattctctgaatttggagtggactggaggagctgataggtttgtggaggacatgaatgtattgggagagatggtaccaccaaacactttaaagaagtttgtgatagagggttatagtagcatcagctttccatcctgggtaatgaatactggacatcatctccccaatctcgtcagtattactttgtgggatttaccaaagtgcaacagcctgccgccttttggtcagttaccaaacctaggagagattactctcggacgtatgcatggcattagaagaattgacaagggcatctatggtggaccgggagcttttcctcgcctgataggatttcacctatgggctatgcacagcttggaagagctggatttcagggacgatcttcaaacacaagtcatgtttcctatgcttcaagacatggaaatttctgactgccccaaagtaaggctgaaatcgagcccacctaatgctggcaactggacaataatactcagtgataatgtactatcatcacgggtagagagatgccacacctctgcttcctcctcttctgcagtggcttgcctgtcagaccatttatgcaagctggtgcctatgcatcagtgggtgttgctttgccacctccctccccttcttcatttacatatcgatggatgcggtgatcttagcagcgcatcgccggagatcatccgagccctctcctccttgaaatcactgatattagaagacaatgaaaaggcagaaggactgccaagatggttgggtgagctcacatgtctacagggcctgagtttagtaggctttcaaaagctgaaggacttggaagggaacatgaggcagcttacttcgctacaatcactaaatctggatggatgcagtatcatggagtcactaccacaatggttagaactcacctctctccaaaacctgagattgaggtaccgcaaaaatctgaatgatttgcaacagacaatatgtgacaacctcacctccctgcagccactaacattggaaaaatgcgttagaactccttctctacctgaaaggatgggcaacctcaactctctgaaagaactaaaagacgaccaggcagagcagccaagattgttgggtgggatcacatgtgtacagcacctgagtttagaaggctttcctgatctgctggacttgcaagggagcatgaggcaactcacttcactaacatcactacatctgtatcaatgcgatagcatgacatcgctaccacaatggttaggagaacttacctctctcaaatggttgacgataaaggattgcggaaagctgaatgatttgcaagagacattatgcaacatcacctccctacagtcactagaattggaagcttgccacagaattcactctctgcctgaaaggatgggcgacctcaattcactcaaggaactgaaaattgatagatgcaagggcatcagttcattgccagagagtatacagcaactcactaatctcgaaaatctatgtatttatatgtgccctggattacggcagtggtatcaatctgatgagaacgagaagaaactcgctcacataaaaaaaaagctcggaactgatgttttcatgagagtccatagcatatgcagcagattcagagggaacaaagctcagcacatcctcaatctctccaaatacacagttgtatctgctggcatttaa
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| Protein seq | MELKYLSLSGSDKIVELPRSFQKLKNLVHLDLSCCSSLLGIPQALHGLAKLEYLNLSLQNGEIHQDKLPLIGLPEVIGSLTNLKYLNLARCMDYVFGSPSTDQIDSFIGSISTFSNLEHLDLSKNKILCSIPESIGSLRMLHTLNLSGSSMLARLPECLTKKESLKVLNVMGCKLFEAKLPQSNFLFTLPHFVVHTGEGQSSSNLPLLEHAILDEFLELSRLENVKSTQEARSIKLIEKESINSLNLEWTGGADRFVEDMNVLGEMVPPNTLKKFVIEGYSSISFPSWVMNTGHHLPNLVSITLWDLPKCNSLPPFGQLPNLGEITLGRMHGIRRIDKGIYGGPGAFPRLIGFHLWAMHSLEELDFRDDLQTQVMFPMLQDMEISDCPKVRLKSSPPNAGNWTIILSDNVLSSRVERCHTSASSSSAVACLSDHLCKLVPMHQWVLLCHLPPLLHLHIDGCGDLSSASPEIIRALSSLKSLILEDNEKAEGLPRWLGELTCLQGLSLVGFQKLKDLEGNMRQLTSLQSLNLDGCSIMESLPQWLELTSLQNLRLRYRKNLNDLQQTICDNLTSLQPLTLEKCVRTPSLPERMGNLNSLKELKDDQAEQPRLLGGITCVQHLSLEGFPDLLDLQGSMRQLTSLTSLHLYQCDSMTSLPQWLGELTSLKWLTIKDCGKLNDLQETLCNITSLQSLELEACHRIHSLPERMGDLNSLKELKIDRCKGISSLPESIQQLTNLENLCIYMCPGLRQWYQSDENEKKLAHIKKKLGTDVFMRVHSICSRFRGNKAQHILNLSKYTVVSAGI |
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| Function | Disease resistance protein RPV1 [UniProtKB/Swiss-Prot:V9M2S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0006900 | OsLima_11g0006900.01 | Chr11 | 5741452 | 5745154 | - | NAM | ||
| CDS seq | atggaactcaagtacttgagcttatcaggttctgataagatagtagaattaccaaggtcttttcagaagctaaaaaatttggtgcatctggatttatcatgttgtagttcattgttaggtatacctcaagctttacatggcctagccaaactcgaatatttgaatttgtcactgcagaatggagaaatccatcaagataagttacctctcatagggttgccagaagtcattggcagtctaacaaatctgaaatacttgaatttagcacggtgcatggattatgtctttggcagcccatcaacagatcaaattgacagtttcattggtagcatcagcactttttccaatctagaacatctggacttgtctaagaataaaattctctgtagtatacctgaaagtattggcagcctgaggatgctacataccttgaacctttcaggttccagcatgctagcaaggcttccagaatgtttgactaaaaaggaaagtctgaaggttctaaatgtgatgggctgcaaattatttgaggccaagcttcctcaatccaacttcctcttcacattgccccactttgtggtgcacaccggtgaaggtcaatctagcagcaatcttcctctccttgaacatgcaattcttgatgaatttttggagctcagtaggcttgaaaatgtgaagtccacacaagaggcgcggagtataaaattgattgaaaaagaaagcattaattctctgaatttggagtggactggaggagctgataggtttgtggaggacatgaatgtattgggagagatggtaccaccaaacactttaaagaagtttgtgatagagggttatagtagcatcagctttccatcctgggtaatgaatactggacatcatctccccaatctcgtcagtattactttgtgggatttaccaaagtgcaacagcctgccgccttttggtcagttaccaaacctaggagagattactctcggacgtatgcatggcattagaagaattgacaagggcatctatggtggaccgggagcttttcctcgcctgataggatttcacctatgggctatgcacagcttggaagagctggatttcagggacgatcttcaaacacaagtcatgtttcctatgcttcaagacatggaaatttctgactgccccaaagtaaggctgaaatcgagcccacctaatgctggcaactggacaataatactcagtgataatgtactatcatcacgggtagagagatgccacacctctgcttcctcctcttctgcagtggcttgcctgtcagaccatttatgcaagctggtgcctatgcatcagtgggtgttgctttgccacctccctccccttcttcatttacatatcgatggatgcggtgatcttagcagcgcatcgccggagatcatccgagccctctcctccttgaaatcactgatattagaagacaatgaaaaggcagaaggactgccaagatggttgggtgagctcacatgtctacagggcctgagtttagtaggctttcaaaagctgaaggacttggaagggaacatgaggcagcttacttcgctacaatcactaaatctggatggatgcagtatcatggagtcactaccacaatggttagaactcacctctctccaaaacctgagattgaggtaccgcaaaaatctgaatgatttgcaacagacaatatgtgacaacctcacctccctgcagccactaacattggaaaaatgcgttagaactccttctctacctgaaaggatgggcaacctcaactctctgaaagaactaaaagacgaccaggcagagcagccaagattgttgggtgggatcacatgtgtacagcacctgagtttagaaggctttcctgatctgctggacttgcaagggagcatgaggcaactcacttcactaacatcactacatctgtatcaatgcgatagcatgacatcgctaccacaatggttaggagaacttacctctctcaaatggttgacgataaaggattgcggaaagctgaatgatttgcaagagacattatgcaacatcacctccctacagtcactagaattggaagcttgccacagaattcactctctgcctgaaaggatgggcgacctcaattcactcaaggaactgaaaattgatagatgcaagggcatcagttcattgccagagagtatacagcaactcactaatctcgaaaatctatgtatttatatgtgccctggattacggcagtggtatcaatctgatgagaacgagaagaaactcgctcacataaaaaaaaagctcggaactgatgttttcatgagagtccatagcatatgcagcagattcagagggaacaaagctcagcacatcctcaatctctccaaatacacagttgtatctgctggcatttaa
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| Protein seq | MELKYLSLSGSDKIVELPRSFQKLKNLVHLDLSCCSSLLGIPQALHGLAKLEYLNLSLQNGEIHQDKLPLIGLPEVIGSLTNLKYLNLARCMDYVFGSPSTDQIDSFIGSISTFSNLEHLDLSKNKILCSIPESIGSLRMLHTLNLSGSSMLARLPECLTKKESLKVLNVMGCKLFEAKLPQSNFLFTLPHFVVHTGEGQSSSNLPLLEHAILDEFLELSRLENVKSTQEARSIKLIEKESINSLNLEWTGGADRFVEDMNVLGEMVPPNTLKKFVIEGYSSISFPSWVMNTGHHLPNLVSITLWDLPKCNSLPPFGQLPNLGEITLGRMHGIRRIDKGIYGGPGAFPRLIGFHLWAMHSLEELDFRDDLQTQVMFPMLQDMEISDCPKVRLKSSPPNAGNWTIILSDNVLSSRVERCHTSASSSSAVACLSDHLCKLVPMHQWVLLCHLPPLLHLHIDGCGDLSSASPEIIRALSSLKSLILEDNEKAEGLPRWLGELTCLQGLSLVGFQKLKDLEGNMRQLTSLQSLNLDGCSIMESLPQWLELTSLQNLRLRYRKNLNDLQQTICDNLTSLQPLTLEKCVRTPSLPERMGNLNSLKELKDDQAEQPRLLGGITCVQHLSLEGFPDLLDLQGSMRQLTSLTSLHLYQCDSMTSLPQWLGELTSLKWLTIKDCGKLNDLQETLCNITSLQSLELEACHRIHSLPERMGDLNSLKELKIDRCKGISSLPESIQQLTNLENLCIYMCPGLRQWYQSDENEKKLAHIKKKLGTDVFMRVHSICSRFRGNKAQHILNLSKYTVVSAGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.056676 | 0.059377 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0211600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0211600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007060 | RBH | 0.0 | 0.993930 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007080 | SBH | 0.030859 | 0.135391 | 0.760307 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006950 | RBH | 0.0 | 0.0 | 0.376646 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006970 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007000 | SBH | 6.293403 | 18.798403 | 15.241825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092600 | RBH | 2.596614 | 18.283927 | 14.3694515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006990 | SBH | 0.265612 | 0.373630 | 1.365511 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0099500 | SBH | 0 | 0.409908 | 0.0101205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006990 | RBH | 3.082204 | 1.990578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007010 | SBH | 1.113749 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006970 | SBH | 1.186617 | 7.702504 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007010 | SBH | 0.210385 | 0.0 | 0.077995 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007110 | SBH | 0.280194 | 5.345597 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007170 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007020 | SBH | 0.0 | 9.216434 | 0.432478 |
