Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_10g0015320 OGI:10058410 | 10/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr10:20878631-20880047
Gene Symbol -
DNA seq

TTAAATAATTTGTAACCAGGATGGGCTTCGTGCAACTTCACTCTCGCACCACAGATCCGGGATCAAGGGGAGATTTTCATGAGGAAAACTATTGGTGGCCATTGGGGCATGGTTAAGACTGGGGATAGTGCATGATGTTTCGCATACGCTATACCAGACGGATCTCAGCTAGATTGACACCACCAACACCAATGACAGACAGTCACAGACTCCAGATAACTATTTGGAATCCGCAATTCGACAGAGCCACCTGGATACCTGCAAAGAGATCATCACTCAATGATTATGAGGACAAAATTCATGTTTGTGTCCTGTAAAAATTCAGTCTGCGTAAGCCATACCCAGTGAGACCTGACAGTCTTCGGTAATCCTCACGTCCATGGATCTGCTCCGCAGCCTGAAAAGAATGAAATTTAAATCTATTAAGCACTGAAGAGAACAAAAACATACATTCAGATGCATCAGAGAGGCATCAGGTGTACCAGGAAACAAGGAAATAAAAAATGAGAAAAGATCAACACCCAACTAAGAAAACTGGTAAGCAACAGTAGCAGAGAACAGCTGAATAACTGAATCTAGGGTTTGCAACAACATGGTACCAATTGAATAGTGTTACCAATGATAGATATTAGAGTGGGCACAAGACAGAAGGATATATTTGGACCACCATGACATATTCTAGAATATTTTTGTCCTTTTTTCAGACGTCTGAACCATCATGGAAGAAAATAGACATTATGCAACAGTCATATATATGGTTTCATGTTTCTAATGGAAACATATCAGGCGAGGGCCATTTGCAAAGAAGAGGCAAGCTAACGCATTGGAAATGTACCTCAGTATAATCATAAGCATTGGAATTTCCAGCTCTGGTGATTCCTAATTGTTGCACATTACTATTCCCAGCTCTCGAGAGGCCTAATTGTAGTGTACCCTACTAGAGTACCTATCAGTAGGTACTTGGTCAAGATAAGAACGGCGGGACATATAATCGGCACCAGGACTAATAGATGAGGGCAGTTCTCTACTAGGCAAGCGAGTAGTTGCTGCATATCTGTCGTATGAAGCAGATGGTGACTTTGCTACTTCCACTACGGTACTCTCTTTTAGAGAAGTACTCTACAGGATACACGGTGTAAGGATCACGAGGCCCATCATTGTTCAACCGTCCGTATGATGTATCATTGGCAGGTCTTCTATATGGTGGATCATTGGAAGGTCTTCCATATTGTGGATATTTGTCTTCCATATGGTGGATCAATGGCAGGTCTTCCATATGGTGGATCATTAGCAGGCCCTCCATATGGGGGACTATTGGCAGATCGTCCATATAGCATGAATTCCCTGTTAGGCAAGATATCAACAGGAGGACCATCAAAAGGGGCAAAAGGTGTCGGATTATTGGAAGAACTTCCAT

More
CDS seq

ATGGAAGTTCTTCCAATAATCCGACACCTTTTGCCCCTTTTGATGGTCCTCCTGTTGATATCTTGCCTAACAGGGAATTCATGCTATATGGACGATCTGCCAATAGTCCCCCATATGGAGGGCCTGCTAATGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACAAATATCCACAATATGGAAGACCTTCCAATGATCCACCATATAGAAGACCTGCCAATGATACATCATACGGACGGTTGAACAATGATGGGCCTCGTGATCCTTACACCGTGTATCCTAGAGTACCGTATAGAGAACTGCCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACCAAGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACTGAGGCTGCGGAGCAGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTCTCACTGGGTATCCAGGTGGCTCTGTCGAATTGCGGATTCCAAATAGTTATCTGGAGTCTGTGACTCTGAGATCCGTCTGGTATAGCGTATGCGAAACATCATGCACTATCCCCAGTCTTAACCATGCCCCAATGGCCACCAATAGTTTTCCTCATGAAAATCTCCCCTTGATCCCGGATCTGTGGTGCGAGAGTGAAGTTGCACGAAGCCCATCCTGGTTACAAATTATTTAA

More
Protein seq

MEVLPIIRHLLPLLMVLLLISCLTGNSCYMDDLPIVPHMEGLLMIHHMEDLPLIHHMEDKYPQYGRPSNDPPYRRPANDTSYGRLNNDGPRDPYTVYPRVPYRELPSSISPGADYMSRRSYLDQGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSGLTGYPGGSVELRIPNSYLESVTLRSVWYSVCETSCTIPSLNHAPMATNSFPHENLPLIPDLWCESEVARSPSWLQII

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_10g0015320 OsLima_10g0015320.01 Chr10 20878631 20880047 - NAM
CDS seq

ATGGAAGTTCTTCCAATAATCCGACACCTTTTGCCCCTTTTGATGGTCCTCCTGTTGATATCTTGCCTAACAGGGAATTCATGCTATATGGACGATCTGCCAATAGTCCCCCATATGGAGGGCCTGCTAATGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACAAATATCCACAATATGGAAGACCTTCCAATGATCCACCATATAGAAGACCTGCCAATGATACATCATACGGACGGTTGAACAATGATGGGCCTCGTGATCCTTACACCGTGTATCCTAGAGTACCGTATAGAGAACTGCCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACCAAGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACTGAGGCTGCGGAGCAGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTCTCACTGGGTATCCAGGTGGCTCTGTCGAATTGCGGATTCCAAATAGTTATCTGGAGTCTGTGACTCTGAGATCCGTCTGGTATAGCGTATGCGAAACATCATGCACTATCCCCAGTCTTAACCATGCCCCAATGGCCACCAATAGTTTTCCTCATGAAAATCTCCCCTTGATCCCGGATCTGTGGTGCGAGAGTGAAGTTGCACGAAGCCCATCCTGGTTACAAATTATTTAA

More
Protein seq

MEVLPIIRHLLPLLMVLLLISCLTGNSCYMDDLPIVPHMEGLLMIHHMEDLPLIHHMEDKYPQYGRPSNDPPYRRPANDTSYGRLNNDGPRDPYTVYPRVPYRELPSSISPGADYMSRRSYLDQGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSGLTGYPGGSVELRIPNSYLESVTLRSVWYSVCETSCTIPSLNHAPMATNSFPHENLPLIPDLWCESEVARSPSWLQII

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.000000 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0495000 SBH 5.097850 3.030061 7.637742
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g35444 RBH 1.168897 0.487053 0.388737
Nipponbare | IRGSP 1.0 | RAP-db Os10g0495000 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0015860 SBH 1.409576 18.736385 15.977048
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0015920 RBH 0.000000 1.000605 0.940603
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0015490 SBH 2.518473 14.325974 19.163500
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0016260 SBH 0.000000 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0015780 SBH 12.807811 20.404175 42.451694
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0309800 RBH 0.9094435 2.858461 3.2901845
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0015560 RBH 0.0 0.280294 0.231759
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0332600 RBH 1.2111525 3.299234 6.7918305
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0015490 SBH 0.565596 0.341854 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0015370 SBH 1.320622 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0015630 RBH 6.162342 12.329508 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0056230 RBH 0.0 0.0 0.300359
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0015840 RBH 0.233369 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G015490 RBH 0.887771 0.0 2.322115
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0015710 SBH 2.463494 59.476727 12.754452
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.