Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_10g0015920 | OGI:10058410 | 10/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr10:21521407-21522659 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagctagattgacaccaccaacaccaatgacagacagtcacagactccagataactatttggaatccgcaattcgacagagccacctggatacctgcaaagagatcatcactcaatgattatgaggacaaaattcatgtttgtgtcctgtaaaaattcagtctgcgtaagccatacccagtgagacctgacagtcttcggtaatcctcacgtccatggatctgctccgcagcctgaaaagaatgaaatttaaatctattaagcactgaagagaacaaaaacatacattcagatgcatcagagaggcatcaggtgtaccaggaaacaaggaaataaaaaatgagaaaagatcaacacccaactaagaaaactggtaagcaacagtagcagagaacagctgaataactgaatctagggtttgcaacaacatggtaacaattgaatagtgttaccaatgatagatattagagtgggcacaagacagaaggatatatttggaccaccatgacatattctagaatatttttgtccttttttcagacgtctgaaccatcatggaagaaaatagacataatgcaacagtcatatatatggtttcatgtttctaatggaaacatatcaggcgagggccatttgcaaagaagaggcaagctaacgcattggaaatgtacctcagtataatcataagcattggaatttccagctctggtgattcctaattgttgcacattactattcccagctctcgagaggcctaattgtagtgtaccctactagagtacctatcagtaggtacttggtcaagataagaacggcgggacatataatcggcaccaggactaatagatgagggcagttctctactaggcaagcgagtagttgctgcatatctgtcgtatgaagcagatggtgactttgctacttccactacggtactctcttttagagaagtactctacaggatacacggtgtaaggatcacgaggcccatcattgttcaaccgtccgtatgatgtatcattggcaggtcttctatatggtggatcattggaaggtcttccatattgtggatattggtcttccatatggtggatcaatggcaggtcttccatatggtggatcattagcaggccctccatatgggggactattggcagatcgtccatatagcatgaattccctgttaggcaagatgtcaacaggaggaccatcaaaaggggcaaaaggtgtcggattattggaagaacttccat
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| CDS seq | atggaagttcttccaataatccgacaccttttgccccttttgatggtcctcctgttgacatcttgcctaacagggaattcatgctatatggacgatctgccaatagtcccccatatggagggcctgctaatgatccaccatatggaagacctgccattgatccaccatatggaagaccaatatccacaatatggaagaccttccaatgatccaccatatagaagacctgccaatgatacatcatacggacggttgaacaatgatgggcctcgtgatccttacaccgtgtatcctagagtaccgtatagagaactgccctcatctattagtcctggtgccgattatatgtcccgccgttcttatcttgaccaaggtacactacaattaggcctctcgagagctgggaatagtaatgtgcaacaattaggaatcaccagagctggaaattccaatgcttatgattatactgaggctgcggagcagatccatggacgtgaggattaccgaagactgtcaggtctcactgggtatccaggtggctctgtcgaattgcggattccaaatagttatctggagtctgtgactgtctgtcattggtgttggtggtgtcaatctagctga
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| Protein seq | MEVLPIIRHLLPLLMVLLLTSCLTGNSCYMDDLPIVPHMEGLLMIHHMEDLPLIHHMEDQYPQYGRPSNDPPYRRPANDTSYGRLNNDGPRDPYTVYPRVPYRELPSSISPGADYMSRRSYLDQGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSGLTGYPGGSVELRIPNSYLESVTVCHWCWWCQSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_10g0015920 | OsKeNa_10g0015920.01 | Chr10 | 21521407 | 21522659 | - | NAM | ||
| CDS seq | atggaagttcttccaataatccgacaccttttgccccttttgatggtcctcctgttgacatcttgcctaacagggaattcatgctatatggacgatctgccaatagtcccccatatggagggcctgctaatgatccaccatatggaagacctgccattgatccaccatatggaagaccaatatccacaatatggaagaccttccaatgatccaccatatagaagacctgccaatgatacatcatacggacggttgaacaatgatgggcctcgtgatccttacaccgtgtatcctagagtaccgtatagagaactgccctcatctattagtcctggtgccgattatatgtcccgccgttcttatcttgaccaaggtacactacaattaggcctctcgagagctgggaatagtaatgtgcaacaattaggaatcaccagagctggaaattccaatgcttatgattatactgaggctgcggagcagatccatggacgtgaggattaccgaagactgtcaggtctcactgggtatccaggtggctctgtcgaattgcggattccaaatagttatctggagtctgtgactgtctgtcattggtgttggtggtgtcaatctagctga
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| Protein seq | MEVLPIIRHLLPLLMVLLLTSCLTGNSCYMDDLPIVPHMEGLLMIHHMEDLPLIHHMEDQYPQYGRPSNDPPYRRPANDTSYGRLNNDGPRDPYTVYPRVPYRELPSSISPGADYMSRRSYLDQGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSGLTGYPGGSVELRIPNSYLESVTVCHWCWWCQSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.000605 | 0.940603 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495000 | SBH | 5.097850 | 3.030061 | 7.637742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35444 | SBH | 1.168897 | 0.487053 | 0.388737 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015860 | SBH | 1.409576 | 18.736385 | 15.977048 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016340 | RBH | 0.164488 | 0.0 | 1.200222 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015490 | SBH | 2.518473 | 14.325974 | 19.163500 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015960 | SBH | 0.043759 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015780 | SBH | 12.807811 | 20.404175 | 42.451694 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0309800 | RBH | 0.9094435 | 2.858461 | 3.2901845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015560 | RBH | 0.0 | 0.280294 | 0.231759 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0332600 | RBH | 1.2111525 | 3.299234 | 6.7918305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015320 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015370 | SBH | 1.320622 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015630 | RBH | 6.162342 | 12.329508 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015490 | SBH | 0.603145 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015840 | RBH | 0.233369 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015490 | RBH | 0.887771 | 0.0 | 2.322115 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015710 | SBH | 2.463494 | 59.476727 | 12.754452 |
