Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0056230 | OGI:10058410 | 10/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg424:26957-28373 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAATAATTTGTAACCAGGATGGGCTTCGTGCAACTTCACTCTCGCACCACAGATCCGGGATCAAGGGGAGATTTTCATGAGGAAAACTATTGGTGGCCATTGGGGCATGGTTAAGACTGGGGATAGTGCATGATGTTTCGCATACGCTATACCAGACGGATCTCAGCTAGATTGACACCACCAACACCAATGACAGACAGTCACAGACTCCAGATAACTATTTGGAATCCGCAATTCGACAGAGCCACCTGGATACCTGCAAAGAGATCATCACTCAATGATTATGAGGACAAAATTCATGTTTGTGTCCTGTAAAAATTCAGTCTGCGTAAGCCATACCCAGTGAGACCTGACAGTCTTCGGTAATCCTCACGTCCATGGATCTGCTCCGCAGCCTGAAAAGAATGAAATTTAAATCTATTAAGCACTGAAGAGAACAAAAACATACATTCAGATGCATCAGAGAGGCATCAGGTGTACCAGGAAACAAGGAAATAAAAAATGAGAAAAGATCAACACCCAACTAAGAAAACTGGTAAGCAACAGTAGCAGAGAACAGCTGAATAACTGAATCTAGGGTTTGCAACAACATGGTACCAATTGAATAGTGTTACCAATGATAGATATTAGAGTGGGCACAAGACAGAAGGATATATTTGGACCACCATGACATATTCTAGAATATTTTTGTCCTTTTTTCAGACGTCTGAACCATCATGGAAGAAAATAGACATTATGCAACAGTCATATATATGGTTTCATGTTTCTAATGGAAACATATCAGGCGAGGGCCATTTGCAAAGAAGAGGCAAGCTAACGCATTGGAAATGTACCTCAGTATAATCATAAGCATTGGAATTTCCAGCTCTGGTGATTCCTAATTGTTGCACATTACTATTCCCAGCTCTCGAGAGGCCTAATTGTAGTGTACCCTACTAGAGTACCTATCAGTAGGTACTTGGTCAAGATAAGAACGGCGGGACATATAATCGGCACCAGGACTAATAGATGAGGGCAGTTCTCTACTAGGCAAGCGAGTAGTTGCTGCATATCTGTCGTATGAAGCAGATGGTGACTTTGCTACTTCCACTACGGTACTCTCTTTTAGAGAAGTACTCTACAGGATACACGGTGTAAGGATCACGAGGCCCATCATTGTTCAACCGTCCGTATGATGTATCATTGGCAGGTCTTCTATATGGTGGATCATTGGAAGGTCTTCCATATTGTGGATATTTGTCTTCCATATGGTGGATCAATGGCAGGTCTTCCATATGGTGGATCATTAGCAGGCCCTCCATATGGGGGACTATTGGCAGATCGTCCATATAGCATGAATTCCCTGTTAGGCAAGATATCAACAGGAGGACCATCAAAAGGGGCAAAAGGTGTCGGATTATTGGAAGAACTTCCAT
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| CDS seq | ATGGAAGTTCTTCCAATAATCCGACACCTTTTGCCCCTTTTGATGGTCCTCCTGTTGATATCTTGCCTAACAGGGAATTCATGCTATATGGACGATCTGCCAATAGTCCCCCATATGGAGGGCCTGCTAATGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACAAATATCCACAATATGGAAGACCTTCCAATGATCCACCATATAGAAGACCTGCCAATGATACATCATACGGACGGTTGAACAATGATGGGCCTCGTGATCCTTACACCGTGTATCCTAGAGTACCGTATAGAGAACTGCCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACCAAGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACTGAGGCTGCGGAGCAGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTCTCACTGGGTATCCAGGTGGCTCTGTCGAATTGCGGATTCCAAATAGTTATCTGGAGTCTGTGACTCTGAGATCCGTCTGGTATAGCGTATGCGAAACATCATGCACTATCCCCAGTCTTAACCATGCCCCAATGGCCACCAATAGTTTTCCTCATGAAAATCTCCCCTTGATCCCGGATCTGTGGTGCGAGAGTGAAGTTGCACGAAGCCCATCCTGGTTACAAATTATTTAA
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| Protein seq | MEVLPIIRHLLPLLMVLLLISCLTGNSCYMDDLPIVPHMEGLLMIHHMEDLPLIHHMEDKYPQYGRPSNDPPYRRPANDTSYGRLNNDGPRDPYTVYPRVPYRELPSSISPGADYMSRRSYLDQGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSGLTGYPGGSVELRIPNSYLESVTLRSVWYSVCETSCTIPSLNHAPMATNSFPHENLPLIPDLWCESEVARSPSWLQII |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0056230 | OsLiXu_Ung0056230.01 | ChrUN-Ctg424 | 26957 | 28373 | - | NAM | ||
| CDS seq | ATGGAAGTTCTTCCAATAATCCGACACCTTTTGCCCCTTTTGATGGTCCTCCTGTTGATATCTTGCCTAACAGGGAATTCATGCTATATGGACGATCTGCCAATAGTCCCCCATATGGAGGGCCTGCTAATGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACAAATATCCACAATATGGAAGACCTTCCAATGATCCACCATATAGAAGACCTGCCAATGATACATCATACGGACGGTTGAACAATGATGGGCCTCGTGATCCTTACACCGTGTATCCTAGAGTACCGTATAGAGAACTGCCCTCATCTATTAGTCCTGGTGCCGATTATATGTCCCGCCGTTCTTATCTTGACCAAGGTACACTACAATTAGGCCTCTCGAGAGCTGGGAATAGTAATGTGCAACAATTAGGAATCACCAGAGCTGGAAATTCCAATGCTTATGATTATACTGAGGCTGCGGAGCAGATCCATGGACGTGAGGATTACCGAAGACTGTCAGGTCTCACTGGGTATCCAGGTGGCTCTGTCGAATTGCGGATTCCAAATAGTTATCTGGAGTCTGTGACTCTGAGATCCGTCTGGTATAGCGTATGCGAAACATCATGCACTATCCCCAGTCTTAACCATGCCCCAATGGCCACCAATAGTTTTCCTCATGAAAATCTCCCCTTGATCCCGGATCTGTGGTGCGAGAGTGAAGTTGCACGAAGCCCATCCTGGTTACAAATTATTTAA
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| Protein seq | MEVLPIIRHLLPLLMVLLLISCLTGNSCYMDDLPIVPHMEGLLMIHHMEDLPLIHHMEDKYPQYGRPSNDPPYRRPANDTSYGRLNNDGPRDPYTVYPRVPYRELPSSISPGADYMSRRSYLDQGTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSGLTGYPGGSVELRIPNSYLESVTLRSVWYSVCETSCTIPSLNHAPMATNSFPHENLPLIPDLWCESEVARSPSWLQII
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.300359 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35444 | SBH | 1.168897 | 0.487053 | 0.388737 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015920 | SBH | 0.000000 | 1.000605 | 0.940603 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0309800 | SBH | 0.9094435 | 2.858461 | 3.2901845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015560 | RBH | 0.0 | 0.280294 | 0.231759 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0332600 | SBH | 1.2111525 | 3.299234 | 6.7918305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015320 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015630 | RBH | 6.162342 | 12.329508 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015490 | RBH | 0.887771 | 0.0 | 2.322115 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
