Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0013860 | OGI:09053000 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:18798447-18802544 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcctcctccccgtggcctcccaccacgggcgccgcctccgccgccgccgccgccgcttcccccgcgcctccggaaggagcggctggcggtgccgcgactcccgccgctgcgcccgccacgacgtcggagcagcgcccggtcaaggttgccccctcccaccccaccccgtcccgtggtctccgcatctgtgtccgactgtccctttgctctttctgctctcggttatacgcggtcacactgagctcgtgttagcctcgcgcaggaagggggagacgccgcggccgcgggggctgctgctgccgtgcagcaggaggaggaggaggaggtggaggcgaagccccagttgctgcgtgaagacgactcgtaattcgcgatctccctctgttactatgctccttgttttactgcaatgcgtgctctgtgtttgcgtaattgcttgtatgaacgctgcctcactcacggttaggctttttttttttttgccggtaatattacacagagtacgaactctgtaaacgcgctgatgtgtagtcgctatcttttatactactgttgtgggtgtggcacaatgctgacaggagtagaacgatgaggtgaggccatttagcctgttactagtatcatggtgttctttgtgtacatgatgactatgtcagcagcaccttgtcagttttgtcagcagcaccttatcagttttgtggtttattacattgtgcacaggaaagcatatcacttcatttgtgacagtgtgagataccttcacagtgttaggatatgctatgtagtcctatatttgcaaataaccaacaagcagagaaacattttttttccctcagaaaaattgtgccaaaactcatgtatatcacttatttttccttccaaatgtgctgtttctcaccaacatatggagaattctgaaatcaactgcgcataactttttgtcctgtagtatagcaaaagcttagattccgtgcctatgcacccggttttgtttgattttatctttggcatctgcaatttcacttgttctgtcttgtatatttcaaaattaaggtgtcacaatcaccttctctaatagaacccacccttgaggagttgatttgcatgatgttactatgtaaattgcaccatgaactgtttggctgccaataaaggttaacacatttttttttcgtatagagagatcaaagaaggttcaacaaatctagtgcttttaaaatagattgggaaaacagagttctgtaaaaaaaaacggagttgcaaaatatattcttctatgaaaaattgaaggactagcatgcatctttgcttgcagatatcatctgttcataactgcatacgttaaagtttctgctacaattattgttgattacttatcatgtaccactttactactgttttccagaatagtatgtgagaaaatgaaaaataggaatataacttcagaaattgatgaaggatttaactgtttttgttatatttcctactgtaatgtaatatgttaattccataggtagtaagcatctcaatctgagctcagcacctatattaatataaattcctttctgtgtggtaaaatagtttaactctttgttcgaatttcaaaccctttgatggtttttaggtaacaaagtgaatacataagatctttgaaaaagaccaagttggtacatacttcctccgtttcacaatgtaagactttctagcattgtgcatattcatttagatgttaatgaatctagacatatgtatgtgtttaaattcattaacatctatatgtatatggacaatgctagaaagtcgtacattgtgaaacggagggagtatatactttgaagaagactaaaatttctccccacactacctcaaggcatgctctatatagaatttggaacaccttggccctcattggctcatacttgatatagaaattactctgtcatggtatttaccttctgcttgttgttgccatgagaaataaaaaaaaatggcagttaaattcgtgcattgcattgtcatgtgcagagaaacagaaatccaagagcacgaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaatacttctctaataaggattttgatggaggtatttgtgaaatcatcatctatatgcagtatagatattacctagtatatttgtgcacactttttttttcacacgtttaatcacatacaggcatgccattttttcagtctcatgctatagagatctgctattgatacagtgcatcatttttctttcaaaaaacccatggatgaaatgagaaaacgtgacaaacttaagttaactgttaaacatagttattccattggaggccagaagaaaatccctctttaagttaattatcatcatttatacaaaaaggaggatggaacatttgggaatacataataaactgataaacatagatgcattactttcatgctatttgttttggattaagtttatcctgaataaaaaaaaagttgaactgaagcatggcatgttacccaattggtcgacatcttaaccctaaaagtctataattatgggaccatgtctctttgcatttattaacagtaagtgtgtacgtcatcttagtatggatctgttaagcttccattttcattgaattttccatttacttactacttccactatcaaagtcctccaaaaggaaagaatgagaaaaatgtgaccttatggaatgtcaccttgggactaacaaggcccaggtagactcctagtacctggactaacaagtcaggcatagattgaacacgctctcctagaactcctcatgcaaaattagtgctcagcaaataactagtaaagcaaatttacgagttgaaatgcaaaacacaataaaatgcccaaattggaaattcacctggaggaatgccgtgcctcggcatgttcatttctttgcctggctgcttgcaaaggattgattaccaaataagtcaatcgtcaacttagctgcatgtgggctatgcaatcatgtccttggagatgctgatcatacttccactgcccttcttactatgcttacgtcgaacccaacccccccccccccccccccaccaccaccaccacaaccgtatgtcctgtttgaaatacgaaatgttcttccattattgtatatacttttataacttgacataatcacatcactaggcctcccttctgttctcacatgtaaacgggtttctttcaagtattttgaatttttttgctttgttgtaagaggctatccctgccgggccggcccaagataggccaaccaaatttacttaagattaggggtatgtacatatgtaagaggctatcctctgttcatcaaagtaaattctatgatggtttcctgattaacatgtctttactaactatttctcttttattacaccttgtgtcaatgtttactcttagtttttcttcattctgttaacaggaaatgtctttgaagaaatcactgttgaaggtgaaactattcagtcaagcaggtacgtttcctctgaatttctcatcgtgtatataaagttacagaatagcaaccgtctgaattttctgtttgtaggtggccatgtacaagatcatttgcagacccagtaaatttttttcgagataagaacagccatgagaggagtgattctccatccttgacagcagactccgctgccaagaacaattctcctagaacagattcctcaccgaaaaatagtgcaagtgctttggccacagagaacaatctaacacctgggaagagacaaccatccaagaagatctgatgggataacagtacgctagttggttgttttctgttcgtccgaagtctgaaggtacgcaacttgaagcatgtaagctaacttgaaaggcaaattcaacctgcgcatgtttgtggccaatgctagattcatttcagtgaagttccagtaacatctgtagtaagaaaaacattgtatttgtgtttgatgtattatagacgattcctggtgaagcattcattggttgctcaaacttttgtcgaactttggttatactttgaatgtaactgttcaatttactctgcgac
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| CDS seq | atgtcctcctccccgtggcctcccaccacgggcgccgcctccgccgccgccgccgccgcttcccccgcgcctccggaaggagcggctggcggtgccgcgactcccgccgctgcgcccgccacgacgtcggagcagcgcccggaagggggagacgccgcggccgcgggggctgctgctgccgtgcagcaggaggaggaggaggaggtggaggcgaagccccagttgctgcgtgaagacgactcagaaacagaaatccaagagcacgaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaatacttctctaataaggattttgatggaggaaatgtctttgaagaaatcactgttgaaggtgaaactattcagtcaagcaggtggccatgtacaagatcatttgcagacccagtaaatttttttcgagataagaacagccatgagaggagtgattctccatccttgacagcagactccgctgccaagaacaattctcctagaacagattcctcaccgaaaaatagtgcaagtgctttggccacagagaacaatctaacacctgggaagagacaaccatccaagaagatctga
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| Protein seq | MSSSPWPPTTGAASAAAAAASPAPPEGAAGGAATPAAAPATTSEQRPEGGDAAAAGAAAAVQQEEEEEVEAKPQLLREDDSETEIQEHEQKINKYQAILAARLKAKYFSNKDFDGGNVFEEITVEGETIQSSRWPCTRSFADPVNFFRDKNSHERSDSPSLTADSAAKNNSPRTDSSPKNSASALATENNLTPGKRQPSKKI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0013860 | OsLima_09g0013860.01 | Chr09 | 18798447 | 18802544 | + | NAM | ||
| CDS seq | atgtcctcctccccgtggcctcccaccacgggcgccgcctccgccgccgccgccgccgcttcccccgcgcctccggaaggagcggctggcggtgccgcgactcccgccgctgcgcccgccacgacgtcggagcagcgcccggaagggggagacgccgcggccgcgggggctgctgctgccgtgcagcaggaggaggaggaggaggtggaggcgaagccccagttgctgcgtgaagacgactcagaaacagaaatccaagagcacgaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaatacttctctaataaggattttgatggaggaaatgtctttgaagaaatcactgttgaaggtgaaactattcagtcaagcaggtggccatgtacaagatcatttgcagacccagtaaatttttttcgagataagaacagccatgagaggagtgattctccatccttgacagcagactccgctgccaagaacaattctcctagaacagattcctcaccgaaaaatagtgcaagtgctttggccacagagaacaatctaacacctgggaagagacaaccatccaagaagatctga
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| Protein seq | MSSSPWPPTTGAASAAAAAASPAPPEGAAGGAATPAAAPATTSEQRPEGGDAAAAGAAAAVQQEEEEEVEAKPQLLREDDSETEIQEHEQKINKYQAILAARLKAKYFSNKDFDGGNVFEEITVEGETIQSSRWPCTRSFADPVNFFRDKNSHERSDSPSLTADSAAKNNSPRTDSSPKNSASALATENNLTPGKRQPSKKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.111356 | 0.271235 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0473966 | RBH | 0.861992 | 0.858626 | 3.468436 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g29810 | RBH | 0.183336 | 0.193385 | 0.184726 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0473966 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0013820 | RBH | 0.308178 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0013770 | RBH | 0.000000 | 0.000000 | 0.735596 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0014030 | RBH | 0.437901 | 11.450766 | 1.718786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013860 | RBH | 0.079859 | 0.197507 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0013970 | RBH | 0.0 | 0.000000 | 1.095745 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0302900 | RBH | 2.0139835 | 2.8071215 | 0.8257365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0013870 | RBH | 0.000000 | 0.722895 | 0.663696 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0293100 | RBH | 1.534851 | 2.2829035 | 3.4118935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019240 | RBH | 0.000000 | 0.188561 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0013660 | RBH | 0.407160 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0013750 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013630 | RBH | 0.309617 | 0.0 | 0.773380 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0013690 | RBH | 0.000000 | 6.935944 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014160 | RBH | 0.000000 | 0.996000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0013940 | RBH | 0.000000 | 4.397167 | 1.710797 |
