Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os09g29810		OGI:09053000 \| 14/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr09:18115125-18121107		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		-
DNA seq		ATGTCCGACGCTCGGTCTCGGCGTTCGGTCGCCTCGAGCACTCGGCGTCAGCAGGACGCCGAGCTCGCCGCAGCAGAAGAGCGCAGGCGAGCAACGGCTCAGACCGCTGCAGCAGCAGCGAGGGCGGCCAGACTGGCGGCAGCGGAGTTGGCAGCAGCCAGGGCGGAGGCGAAGGCGGAGGCGGCGGAAGATGCGGCACGTGCGGCGGAGGTAGAGGTTGAGACCTTGCGCAGCAGCATCAACGGCTCCATTGCCGGCGACATCACCGCCGACAGGGAGCTTGAGGAGCTGGCAAGAGGAAGGGCACGGGAGCGAGCAGAGCGGTGGGCAGCAGCCCACCTCCACGGCGGCGGCGGCGGCCCAAGGGACCGCGCGCCCGCCGACGGGAACCCAGACGAGCGCAGGCGTGCCGGCGGCAGCCCGGAGCTCGCACGTGGCCCTCGCAGGCAGCACGGCTCTCTCTCCCCTGACCGGCGCCATGGTCACCACGGTGTCCAGACGGTGGTCAGGGACTTTGGTCCCGGCGGTGGGTGGCCTACCCTCACCAAAACCAACTACATCGAGTGGGCCGCGGTGATGAGGGTGAGGCTCCAGGTGCGGCACATGTGGGAGGCAGTCCGGTACGGTGACGTCGACTACGACGAGGATCGGCGGGCACTGGATGCCCTCATCGCTGCAGTCCCGCCCGAGATGCAGTTCTCGCTTTCCCAGAAGCGGACTGCCAAGGAGGCCTGGGACACCATCGCTGCGGCACGCATCGGCAGCGACCGCGCCCGCAAGTCCACACTGCAGGCACTCCGCAAGGAGTGGGAGAACCTGGCCTTCAAGCCAGGTGAGGATGTTGATGACTTTGCTCTCCGTCTCAACACTCTCTTGCAGAAAATGGTGCAGTACGGTGACGACACCTACGACGAGGAGAGAGCTGTCGAGAAGCTCTTCCGCTGCGTCCCTGAGAAGTACAGACAGATCGCTCGCTCGATCGAATCTTTGCTGGACCTCTCCACGATGTCGATCGAGGAGGCGTTAGGTCGCCTCAAGGTCGTCGATGGTGATGAGCCACAGCCTCTCTCGGGGCCCATCACCATCGGCGGGAAGCTCCATCTCACTAGGGAGCAGTGGGAGGCCTCTCAGGGTGACGGGAGGAAGGGGGAGTCATCTTCCCCGACAGGCGGCCGTAAGCCGCGCAAGGCGCGGGGAGGTGTCCAGCTACGGTGGGCGCGAAGACGTGCCGAGGGTGGCGCCCGCAGAGGCGCCCAGGGCGTTGCCACCGGCAACCACAAGCCGGCACGAGACGACGCCTGCCGCAACTGTGGCAAGCTTGGCCATTGGGCCAAAGACTGTCGACAGCCACGACGCGGCCAGGCCCACGTCTCACGGGTGGAGGAGGAAGAGCCGGCTCTGCTCCTGGCTCACGCAAGCATCGAGCTACCTCCAGCGGCACCGGCCGCAGCGGCTTTCCTCCACCTTGATGAGCCGAAGGTACTCGTCTCCCTCTGCAACGGCTCTAGCAACGACAAGGCTGATGGGTGGTACCTTGACACCGGCGCCACCCATCACATGACCGGCCGACGGGAGTTCTTCACCGAGTTCGACTCCAGCGTCCGAGGCTCCGTCAAGTTCGGGGACGCCTCCGGCGTGGAGATCAAGGGTGTTGGCTCCGTCACCTTCACCGCCAAGTCCGGTGAGCACAGGCTGCTCACCGGAGTCTACTACATCCCCGCGTTGAGGAATTCTATCATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACAACCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCATGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACGAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGAGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTACTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGTGGCCGCAAGCTGCGCGTGCTGCGCACTGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGTTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTATAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCTCTTCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACAGCCGTCTACATCCTCAATCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCACAAGCTGGCGGTCTCCCACCTACGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGTAAGCTCGACGACAGGAGCACCCCAGGGGTGTTCATCGGCTACGCGGAGGGCTCGAAGGCCTACCGCATCCTCGACCCGGAGACACAGCGTGTGCGCACAGTGCGCGACGTAGTGTTCGACGAAGGGCGAGGGTGGGTATGGGACAAGGCGGTGGATGATGGTTCGACTCCGACGTACGACGACTTCACCATCGAGTACGTCCACTTCGAGGGAGCTGGGGGAGTAGGCAGCTCTTCTTCACCGAGCGTGTCTACCCCAGTCCCCGAGCCTCCACCGACTCCAACACCAACACACCCTCGGGCCACGACTTCGACTACGACGAGCTCTTCGTCGACACCACCCCAGCCGGTGTCCCCACGCGCTCCAGCACCAATAGCCACTCCTCCGGGCACGTCTACTCCGACGCCAGCTCGTGTTGAGCGCAGCCCGGTGGAGTTCGCTACTCCGCTCTCCCACGACGGGGAGCGCATCGACGCGTACCACGACGGCGAGCAGCTACGGTACCGTACGATAGAGGATCTTCTCGGCGACCAGCCGGTGCCGGGACTGGTGCCTCGCGACCTAGAGGCGCAGTTGCACCTTGCGTGCGACGACGATGAGCCTCGGTTTTTTGCAGAGGCCGAGAAACACGCGGCATGGCATGCCGCGATGCAGTCGGAGATGGACGCGGTTCAGGAGAACCGCACCTGGGAGCTTGCTGACCTCCCTCATGGTCACCGCGCAATCACCCTTAAGTGGGTGTTCAAGCTGAAGAGGGATGAAGCCAGAGCCATCGTCAAGCACAAGGCTCGCTTGGTGGCACGCGGTTTCGTGCAGCAGGAGGGGATCGACTACGACGATGCCTTCGCTCCCGTGGCACGGATGGAGTCCGTGCGGCTCCTTCTTGCGCTGGCTGCTCAGGAAGGCTGGGGCGTCCATCACATGGACGTCAAGTCGGCGTTTCTAAACGGCGACTTGAAGGAGGAGGTCTACGTGCACCAGCCGCCGGGATTTGTGATCCCCGGCAAGGAGGGCAAGGTGCTACGCCTGCACAAGGCCCTCTACGGCTTGCGGCAGGCACCGAGGGCGTGGAATGCCAAGTTGGATTCCACGCTCAAGGGGATGGGCTTCGAGCAAAGCCCGTACGAGGCGGCCATCTACCGGCGGGGCAATGGAGGAAATGCCTTGCTGGTGGGTGTCTACGTCGACGACTTGGTGATCACCGGCACCAAGGATGCGGAGGTCGCGGCGTTCAAGGAGGAGATGAAGGCCACCTTCCAGATGAGTGATCTGGGGCCTCTCTCCTTCTACCTGGGGATCGAAGTGCACCAGGACAACTCCGGGATCACGCTTCGACAGACCGCCTACGCCAAGCGCGTCGTTGAGCTGGCTGGGCTCACCGATTGCAACCCAGCTCTCACTCCGATGGAGGAGAGACTGAAGCTGAGCCGCGACAGCACGACGGAGGAGGTGGATGCTACACAGTACCGACGTCTTGTGGGGAGCCTTCGCTACCTCACCCACACACGGACGGACTTGGCCTTCTCCGTCGGCTACGTCAGTCGGTTCATGCAGCGACCGACGACGGAGCACCAGCAGGCTGTGAAGAGGATCATCCGCTACGTTGCGGGGACTCTCGACCATGGTCTCTACTACCCGAGGTGTCCTGGCAAGGCACACTTCGTCGGGTACAGCGACAGCGACCACGCCGGCGACATCGACACCAGCAAGAGCACGAGCGGGATTCTCTTCTTCCTCGGCGAGTGCCTCGTTAGCTGGCAGTCGGTCAAGCAGCAGGTGGTGGCCCTGTCCAGCTGCGAGGCCGAGTACATGGCGGCATCTGCCGCTTCGACCCAGGCGCTCTGGCTTGCTCGACTGCTTGGTGATCTCCTCGGCAGAGACACTGGAGCAGTAGAGCTCAGGGTGGACAGCAAGTCCGCTCTGGCCCTGGCAAAGAACCCCGTTTTTCACGAACGGAGCAAGCACATCCGGGTGAGGTACCACTTCATTCGAAGCTACTTGGAGGAAGGGAGCATCAAGGCGAGCTACATCAACACCAAGGACCAGCTTGCGGACTTGCTCACCAAGCCTCTTGGGAGGATCAAGTTCCTCGAGCTCTGCTCCAGGATCGGGATGGCCCAACTTTCCCACAAGACGACGCACAAGACTTAGGGGGAGAATGATGGAATAAGCCTTGTGGTCTTTGGTCCTTGTGGTCCTTCTCTTGCTTTTAGGTTGTTTTTCCCCCTTTTAGGACAGCATCCTTTCAGTTTTGCTTTTAGCATCTTTCGGTTTTGCTTTTAGCATCCCTAGGACAGCATCTAGCATCTCCTTTATGCTTTATTCAGTTTGGATGCTCTCTAGGACAGCATTGCGTTCAAATTTTAGACTAGTGTGGGCAGCAATTAGCTAGCAGCCATCCAGCCAGCTATGGCTATATATATGTATCCAACCTCCCTCGGGAAGGTATGGCTTTTGTGTTTTGTGAATGAAGAAAACCAGAAAATTGCCCCATCTCGAGTGCCATCCTCTTCTCAATGAGAGTAACCATTGAAATTCTAACATTTTTTGCTTTGTTGTAAGAGGCTATCCCTGCCGGGCCGGCCCAAGATAGGCCAACCAAATTTACTTAAGATTAGGGGTATGTACATATGTAAGAGGCTATCCTCTGTTCATCAAAGTAAATTCTATGATGGTTTCCTGATTAACATGTCTTTACTAACTATTTCTCTTTTATTACACCTTGTGTCAATGTTTACTCTTAGTTTTTCTTCATTCTGTTAACAGGAAATGTCTTTGAAGAAATCACTGTTGAAGGTGAAACTATTCAGTCAAGCAGGTACGTTTCCTCTGAATTTCTCATCGTGTATATAAAGTTACAGAATAGCAACCGTCTGAATTTTCTGTTTGTAGGTGGCCATGTACAAGATCATTTGCAGACCCAGTAAATTTTTTTCGAGATAAGAACAGCCATGAGAGGAGTGATTCTCCATCCTTGACAGCAGACTCCGCTGCCAAGAACAATTCTCCTAGAACAGATTCCTCACCGAAAAATAGTGCAAGTGCTTTGGCCACAGAGAACAATCTAACACCTGGGAAGAGACAACCATCCAAGAAGATCTGATGGGATAACAGTACGCTAGTTGGTTGTTTTCTGTTCGTCCGAAGTCTGAAGGTACGCAACTTGAAGCATGTAAGCTAACTTGAAAGGCAAATTCAACCTGCGCATGTTTGTGGCCAATGCTAGATTCATTTCAGTGAAGTTCCAGTAACATCTGTAGTAAGAAAAACATTGTATTTGTGTTTGATGTATTATAGACGATTCCTGGTGAAGCATTCATTGGTTGCT More
CDS seq		ATGTCCGACGCTCGGTCTCGGCGTTCGGTCGCCTCGAGCACTCGGCGTCAGCAGGACGCCGAGCTCGCCGCAGCAGAAGAGCGCAGGCGAGCAACGGCTCAGACCGCTGCAGCAGCAGCGAGGGCGGCCAGACTGGCGGCAGCGGAGTTGGCAGCAGCCAGGGCGGAGGCGAAGGCGGAGGCGGCGGAAGATGCGGCACGTGCGGCGGAGGTAGAGGTTGAGACCTTGCGCAGCAGCATCAACGGCTCCATTGCCGGCGACATCACCGCCGACAGGGAGCTTGAGGAGCTGGCAAGAGGAAGGGCACGGGAGCGAGCAGAGCGGTGGGCAGCAGCCCACCTCCACGGCGGCGGCGGCGGCCCAAGGGACCGCGCGCCCGCCGACGGGAACCCAGACGAGCGCAGGCGTGCCGGCGGCAGCCCGGAGCTCGCACGTGGCCCTCGCAGGCAGCACGGCTCTCTCTCCCCTGACCGGCGCCATGGTCACCACGGTGTCCAGACGGTGGTCAGGGACTTTGGTCCCGGCGGTGGGTGGCCTACCCTCACCAAAACCAACTACATCGAGTGGGCCGCGGTGATGAGGGTGAGGCTCCAGGTGCGGCACATGTGGGAGGCAGTCCGGTACGGTGACGTCGACTACGACGAGGATCGGCGGGCACTGGATGCCCTCATCGCTGCAGTCCCGCCCGAGATGCAGTTCTCGCTTTCCCAGAAGCGGACTGCCAAGGAGGCCTGGGACACCATCGCTGCGGCACGCATCGGCAGCGACCGCGCCCGCAAGTCCACACTGCAGGCACTCCGCAAGGAGTGGGAGAACCTGGCCTTCAAGCCAGGTGAGGATGTTGATGACTTTGCTCTCCGTCTCAACACTCTCTTGCAGAAAATGGTGCAGTACGGTGACGACACCTACGACGAGGAGAGAGCTGTCGAGAAGCTCTTCCGCTGCGTCCCTGAGAAGTACAGACAGATCGCTCGCTCGATCGAATCTTTGCTGGACCTCTCCACGATGTCGATCGAGGAGGCGTTAGGTCGCCTCAAGGTCGTCGATGGTGATGAGCCACAGCCTCTCTCGGGGCCCATCACCATCGGCGGGAAGCTCCATCTCACTAGGGAGCAGTGGGAGGCCTCTCAGGGTGACGGGAGGAAGGGGGAGTCATCTTCCCCGACAGGCGGCCGTAAGCCGCGCAAGGCGCGGGGAGGTGTCCAGCTACGGTGGGCGCGAAGACGTGCCGAGGGTGGCGCCCGCAGAGGCGCCCAGGGCGTTGCCACCGGCAACCACAAGCCGGCACGAGACGACGCCTGCCGCAACTGTGGCAAGCTTGGCCATTGGGCCAAAGACTGTCGACAGCCACGACGCGGCCAGGCCCACGTCTCACGGGTGGAGGAGGAAGAGCCGGCTCTGCTCCTGGCTCACGCAAGCATCGAGCTACCTCCAGCGGCACCGGCCGCAGCGGCTTTCCTCCACCTTGATGAGCCGAAGGTACTCGTCTCCCTCTGCAACGGCTCTAGCAACGACAAGGCTGATGGGTGGTACCTTGACACCGGCGCCACCCATCACATGACCGGCCGACGGGAGTTCTTCACCGAGTTCGACTCCAGCGTCCGAGGCTCCGTCAAGTTCGGGGACGCCTCCGGCGTGGAGATCAAGGGTGTTGGCTCCGTCACCTTCACCGCCAAGTCCGGTGAGCACAGGCTGCTCACCGGAGTCTACTACATCCCCGCGTTGAGGAATTCTATCATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACAACCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCATGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACGAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGAGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTACTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGTGGCCGCAAGCTGCGCGTGCTGCGCACTGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGTTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTATAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCTCTTCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACAGCCGTCTACATCCTCAATCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCACAAGCTGGCGGTCTCCCACCTACGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGTAAGCTCGACGACAGGAGCACCCCAGGGGTGTTCATCGGCTACGCGGAGGGCTCGAAGGCCTACCGCATCCTCGACCCGGAGACACAGCGTGTGCGCACAGTGCGCGACGTAGTGTTCGACGAAGGGCGAGGGTGGGTATGGGACAAGGCGGTGGATGATGGTTCGACTCCGACGTACGACGACTTCACCATCGAGTACGTCCACTTCGAGGGAGCTGGGGGAGTAGGCAGCTCTTCTTCACCGAGCGTGTCTACCCCAGTCCCCGAGCCTCCACCGACTCCAACACCAACACACCCTCGGGCCACGACTTCGACTACGACGAGCTCTTCGTCGACACCACCCCAGCCGGTGTCCCCACGCGCTCCAGCACCAATAGCCACTCCTCCGGGCACGTCTACTCCGACGCCAGCTCGTGTTGAGCGCAGCCCGGTGGAGTTCGCTACTCCGCTCTCCCACGACGGGGAGCGCATCGACGCGTACCACGACGGCGAGCAGCTACGGTACCGTACGATAGAGGATCTTCTCGGCGACCAGCCGGTGCCGGGACTGGTGCCTCGCGACCTAGAGGCGCAGTTGCACCTTGCGTGCGACGACGATGAGCCTCGGTTTTTTGCAGAGGCCGAGAAACACGCGGCATGGCATGCCGCGATGCAGTCGGAGATGGACGCGGTTCAGGAGAACCGCACCTGGGAGCTTGCTGACCTCCCTCATGGTCACCGCGCAATCACCCTTAAGTGGGTGTTCAAGCTGAAGAGGGATGAAGCCAGAGCCATCGTCAAGCACAAGGCTCGCTTGGTGGCACGCGGTTTCGTGCAGCAGGAGGGGATCGACTACGACGATGCCTTCGCTCCCGTGGCACGGATGGAGTCCGTGCGGCTCCTTCTTGCGCTGGCTGCTCAGGAAGGCTGGGGCGTCCATCACATGGACGTCAAGTCGGCGTTTCTAAACGGCGACTTGAAGGAGGAGGTCTACGTGCACCAGCCGCCGGGATTTGTGATCCCCGGCAAGGAGGGCAAGGTGCTACGCCTGCACAAGGCCCTCTACGGCTTGCGGCAGGCACCGAGGGCGTGGAATGCCAAGTTGGATTCCACGCTCAAGGGGATGGGCTTCGAGCAAAGCCCGTACGAGGCGGCCATCTACCGGCGGGGCAATGGAGGAAATGCCTTGCTGGTGGGTGTCTACGTCGACGACTTGGTGATCACCGGCACCAAGGATGCGGAGGTCGCGGCGTTCAAGGAGGAGATGAAGGCCACCTTCCAGATGAGTGATCTGGGGCCTCTCTCCTTCTACCTGGGGATCGAAGTGCACCAGGACAACTCCGGGATCACGCTTCGACAGACCGCCTACGCCAAGCGCGTCGTTGAGCTGGCTGGGCTCACCGATTGCAACCCAGCTCTCACTCCGATGGAGGAGAGACTGAAGCTGAGCCGCGACAGCACGACGGAGGAGGTGGATGCTACACAGTACCGACGTCTTGTGGGGAGCCTTCGCTACCTCACCCACACACGGACGGACTTGGCCTTCTCCGTCGGCTACGTCAGTCGGTTCATGCAGCGACCGACGACGGAGCACCAGCAGGCTGTGAAGAGGATCATCCGCTACGTTGCGGGGACTCTCGACCATGGTCTCTACTACCCGAGGTGTCCTGGCAAGGCACACTTCGTCGGGTACAGCGACAGCGACCACGCCGGCGACATCGACACCAGCAAGAGCACGAGCGGGATTCTCTTCTTCCTCGGCGAGTGCCTCGTTAGCTGGCAGTCGGTCAAGCAGCAGGTGGTGGCCCTGTCCAGCTGCGAGGCCGAGTACATGGCGGCATCTGCCGCTTCGACCCAGGCGCTCTGGCTTGCTCGACTGCTTGGTGATCTCCTCGGCAGAGACACTGGAGCAGTAGAGCTCAGGGTGGACAGCAAGTCCGCTCTGGCCCTGGCAAAGAACCCCGTTTTTCACGAACGGAGCAAGCACATCCGGGTGAGGTACCACTTCATTCGAAGCTACTTGGAGGAAGGGAGCATCAAGGCGAGCTACATCAACACCAAGGACCAGCTTGCGGACTTGCTCACCAAGCCTCTTGGGAGGATCAAGCTATCCCTGCCGGGCCGGCCCAAGATAGGCCAACCAAATTTACTTAAGATTAGGGGAAATGTCTTTGAAGAAATCACTGTTGAAGGTGAAACTATTCAGTCAAGCAGGTGGCCATGTACAAGATCATTTGCAGACCCAGTAAATTTTTTTCGAGATAAGAACAGCCATGAGAGGAGTGATTCTCCATCCTTGACAGCAGACTCCGCTGCCAAGAACAATTCTCCTAGAACAGATTCCTCACCGAAAAATAGTGCAAGTGCTTTGGCCACAGAGAACAATCTAACACCTGGGAAGAGACAACCATCCAAGAAGATCTGA More
Protein seq		MSDARSRRSVASSTRRQQDAELAAAEERRRATAQTAAAAARAARLAAAELAAARAEAKAEAAEDAARAAEVEVETLRSSINGSIAGDITADRELEELARGRARERAERWAAAHLHGGGGGPRDRAPADGNPDERRRAGGSPELARGPRRQHGSLSPDRRHGHHGVQTVVRDFGPGGGWPTLTKTNYIEWAAVMRVRLQVRHMWEAVRYGDVDYDEDRRALDALIAAVPPEMQFSLSQKRTAKEAWDTIAAARIGSDRARKSTLQALRKEWENLAFKPGEDVDDFALRLNTLLQKMVQYGDDTYDEERAVEKLFRCVPEKYRQIARSIESLLDLSTMSIEEALGRLKVVDGDEPQPLSGPITIGGKLHLTREQWEASQGDGRKGESSSPTGGRKPRKARGGVQLRWARRRAEGGARRGAQGVATGNHKPARDDACRNCGKLGHWAKDCRQPRRGQAHVSRVEEEEPALLLAHASIELPPAAPAAAAFLHLDEPKVLVSLCNGSSNDKADGWYLDTGATHHMTGRREFFTEFDSSVRGSVKFGDASGVEIKGVGSVTFTAKSGEHRLLTGVYYIPALRNSIISVGQLDENGSRVLVEDGLMRIWDRRRRLLAKVTRGTNRLYILSAQVAQPVCLAARRDDEAWQWHERFGHLHFEALKQLSAKEMVRGMPCLDHVEQLCDVCVVTKQRRLPFPQQTSFRAKERLELVHGDLCGPVTPATPGGRRYFLLLVDDLSRYMWVMVLGSKGEAADAIRHAQAAAEAECGRKLRVLRTDNGGEFTAAEFASYCVDEGIQRHYTAPYSPQQNGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGHKLAVSHLRVFGCLAFAKELGHIGKLDDRSTPGVFIGYAEGSKAYRILDPETQRVRTVRDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVHFEGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSSSSTPPQPVSPRAPAPIATPPGTSTPTPARVERSPVEFATPLSHDGERIDAYHDGEQLRYRTIEDLLGDQPVPGLVPRDLEAQLHLACDDDEPRFFAEAEKHAAWHAAMQSEMDAVQENRTWELADLPHGHRAITLKWVFKLKRDEARAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYGLRQAPRAWNAKLDSTLKGMGFEQSPYEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVAAFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITLRQTAYAKRVVELAGLTDCNPALTPMEERLKLSRDSTTEEVDATQYRRLVGSLRYLTHTRTDLAFSVGYVSRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYSDSDHAGDIDTSKSTSGILFFLGECLVSWQSVKQQVVALSSCEAEYMAASAASTQALWLARLLGDLLGRDTGAVELRVDSKSALALAKNPVFHERSKHIRVRYHFIRSYLEEGSIKASYINTKDQLADLLTKPLGRIKLSLPGRPKIGQPNLLKIRGNVFEEITVEGETIQSSRWPCTRSFADPVNFFRDKNSHERSDSPSLTADSAAKNNSPRTDSSPKNSASALATENNLTPGKRQPSKKI
Function		Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os09g29810	LOC_Os09g29810.1	Chr09	18115125	18121107	+	MSU_osa1r7
CDS seq	ATGTCCGACGCTCGGTCTCGGCGTTCGGTCGCCTCGAGCACTCGGCGTCAGCAGGACGCCGAGCTCGCCGCAGCAGAAGAGCGCAGGCGAGCAACGGCTCAGACCGCTGCAGCAGCAGCGAGGGCGGCCAGACTGGCGGCAGCGGAGTTGGCAGCAGCCAGGGCGGAGGCGAAGGCGGAGGCGGCGGAAGATGCGGCACGTGCGGCGGAGGTAGAGGTTGAGACCTTGCGCAGCAGCATCAACGGCTCCATTGCCGGCGACATCACCGCCGACAGGGAGCTTGAGGAGCTGGCAAGAGGAAGGGCACGGGAGCGAGCAGAGCGGTGGGCAGCAGCCCACCTCCACGGCGGCGGCGGCGGCCCAAGGGACCGCGCGCCCGCCGACGGGAACCCAGACGAGCGCAGGCGTGCCGGCGGCAGCCCGGAGCTCGCACGTGGCCCTCGCAGGCAGCACGGCTCTCTCTCCCCTGACCGGCGCCATGGTCACCACGGTGTCCAGACGGTGGTCAGGGACTTTGGTCCCGGCGGTGGGTGGCCTACCCTCACCAAAACCAACTACATCGAGTGGGCCGCGGTGATGAGGGTGAGGCTCCAGGTGCGGCACATGTGGGAGGCAGTCCGGTACGGTGACGTCGACTACGACGAGGATCGGCGGGCACTGGATGCCCTCATCGCTGCAGTCCCGCCCGAGATGCAGTTCTCGCTTTCCCAGAAGCGGACTGCCAAGGAGGCCTGGGACACCATCGCTGCGGCACGCATCGGCAGCGACCGCGCCCGCAAGTCCACACTGCAGGCACTCCGCAAGGAGTGGGAGAACCTGGCCTTCAAGCCAGGTGAGGATGTTGATGACTTTGCTCTCCGTCTCAACACTCTCTTGCAGAAAATGGTGCAGTACGGTGACGACACCTACGACGAGGAGAGAGCTGTCGAGAAGCTCTTCCGCTGCGTCCCTGAGAAGTACAGACAGATCGCTCGCTCGATCGAATCTTTGCTGGACCTCTCCACGATGTCGATCGAGGAGGCGTTAGGTCGCCTCAAGGTCGTCGATGGTGATGAGCCACAGCCTCTCTCGGGGCCCATCACCATCGGCGGGAAGCTCCATCTCACTAGGGAGCAGTGGGAGGCCTCTCAGGGTGACGGGAGGAAGGGGGAGTCATCTTCCCCGACAGGCGGCCGTAAGCCGCGCAAGGCGCGGGGAGGTGTCCAGCTACGGTGGGCGCGAAGACGTGCCGAGGGTGGCGCCCGCAGAGGCGCCCAGGGCGTTGCCACCGGCAACCACAAGCCGGCACGAGACGACGCCTGCCGCAACTGTGGCAAGCTTGGCCATTGGGCCAAAGACTGTCGACAGCCACGACGCGGCCAGGCCCACGTCTCACGGGTGGAGGAGGAAGAGCCGGCTCTGCTCCTGGCTCACGCAAGCATCGAGCTACCTCCAGCGGCACCGGCCGCAGCGGCTTTCCTCCACCTTGATGAGCCGAAGGTACTCGTCTCCCTCTGCAACGGCTCTAGCAACGACAAGGCTGATGGGTGGTACCTTGACACCGGCGCCACCCATCACATGACCGGCCGACGGGAGTTCTTCACCGAGTTCGACTCCAGCGTCCGAGGCTCCGTCAAGTTCGGGGACGCCTCCGGCGTGGAGATCAAGGGTGTTGGCTCCGTCACCTTCACCGCCAAGTCCGGTGAGCACAGGCTGCTCACCGGAGTCTACTACATCCCCGCGTTGAGGAATTCTATCATCAGCGTGGGACAGCTGGATGAGAACGGCTCACGCGTGTTGGTCGAGGACGGACTCATGAGGATTTGGGATCGCCGTCGTCGCCTTCTTGCCAAGGTAACCAGAGGCACTAATCGACTCTACATCCTCAGCGCGCAGGTCGCACAACCAGTTTGCCTCGCCGCTCGTCGGGACGACGAGGCGTGGCAGTGGCATGAGCGCTTCGGGCACCTCCACTTCGAGGCCCTGAAGCAGCTCAGTGCCAAGGAGATGGTGCGAGGCATGCCGTGCCTTGACCACGTGGAGCAGCTCTGCGACGTCTGCGTGGTGACGAAGCAGCGGCGGCTCCCCTTTCCCCAGCAGACGAGCTTCCGAGCCAAGGAGCGGCTCGAGCTCGTGCACGGGGACTTGTGTGGCCCAGTGACACCGGCCACACCAGGAGGACGACGTTACTTCCTGCTGCTCGTCGACGACCTCTCCCGCTACATGTGGGTGATGGTCCTCGGCAGCAAGGGAGAGGCTGCGGACGCCATCAGGCATGCGCAGGCTGCTGCAGAGGCGGAGTGTGGCCGCAAGCTGCGCGTGCTGCGCACTGACAACGGCGGCGAATTCACGGCGGCTGAATTCGCGTCGTACTGCGTTGATGAGGGCATTCAGCGCCACTACACCGCGCCGTATAGCCCACAGCAGAACGGCGTCGTCGAGCGGCGCAACCAGACGGTTGTGGGGATGGCTCGGGCTCTTCTCAAGCAGAGGGGGATGCCGGCCATCTTCTGGGGGGAGGCGGTGGTGACAGCCGTCTACATCCTCAATCGCTCGCCTACCAAGGCCCTCGATGGCAGGACACCGTACGAGGCTTGGCATGGGCACAAGCTGGCGGTCTCCCACCTACGGGTCTTCGGCTGCCTCGCGTTCGCCAAGGAGCTTGGCCACATCGGTAAGCTCGACGACAGGAGCACCCCAGGGGTGTTCATCGGCTACGCGGAGGGCTCGAAGGCCTACCGCATCCTCGACCCGGAGACACAGCGTGTGCGCACAGTGCGCGACGTAGTGTTCGACGAAGGGCGAGGGTGGGTATGGGACAAGGCGGTGGATGATGGTTCGACTCCGACGTACGACGACTTCACCATCGAGTACGTCCACTTCGAGGGAGCTGGGGGAGTAGGCAGCTCTTCTTCACCGAGCGTGTCTACCCCAGTCCCCGAGCCTCCACCGACTCCAACACCAACACACCCTCGGGCCACGACTTCGACTACGACGAGCTCTTCGTCGACACCACCCCAGCCGGTGTCCCCACGCGCTCCAGCACCAATAGCCACTCCTCCGGGCACGTCTACTCCGACGCCAGCTCGTGTTGAGCGCAGCCCGGTGGAGTTCGCTACTCCGCTCTCCCACGACGGGGAGCGCATCGACGCGTACCACGACGGCGAGCAGCTACGGTACCGTACGATAGAGGATCTTCTCGGCGACCAGCCGGTGCCGGGACTGGTGCCTCGCGACCTAGAGGCGCAGTTGCACCTTGCGTGCGACGACGATGAGCCTCGGTTTTTTGCAGAGGCCGAGAAACACGCGGCATGGCATGCCGCGATGCAGTCGGAGATGGACGCGGTTCAGGAGAACCGCACCTGGGAGCTTGCTGACCTCCCTCATGGTCACCGCGCAATCACCCTTAAGTGGGTGTTCAAGCTGAAGAGGGATGAAGCCAGAGCCATCGTCAAGCACAAGGCTCGCTTGGTGGCACGCGGTTTCGTGCAGCAGGAGGGGATCGACTACGACGATGCCTTCGCTCCCGTGGCACGGATGGAGTCCGTGCGGCTCCTTCTTGCGCTGGCTGCTCAGGAAGGCTGGGGCGTCCATCACATGGACGTCAAGTCGGCGTTTCTAAACGGCGACTTGAAGGAGGAGGTCTACGTGCACCAGCCGCCGGGATTTGTGATCCCCGGCAAGGAGGGCAAGGTGCTACGCCTGCACAAGGCCCTCTACGGCTTGCGGCAGGCACCGAGGGCGTGGAATGCCAAGTTGGATTCCACGCTCAAGGGGATGGGCTTCGAGCAAAGCCCGTACGAGGCGGCCATCTACCGGCGGGGCAATGGAGGAAATGCCTTGCTGGTGGGTGTCTACGTCGACGACTTGGTGATCACCGGCACCAAGGATGCGGAGGTCGCGGCGTTCAAGGAGGAGATGAAGGCCACCTTCCAGATGAGTGATCTGGGGCCTCTCTCCTTCTACCTGGGGATCGAAGTGCACCAGGACAACTCCGGGATCACGCTTCGACAGACCGCCTACGCCAAGCGCGTCGTTGAGCTGGCTGGGCTCACCGATTGCAACCCAGCTCTCACTCCGATGGAGGAGAGACTGAAGCTGAGCCGCGACAGCACGACGGAGGAGGTGGATGCTACACAGTACCGACGTCTTGTGGGGAGCCTTCGCTACCTCACCCACACACGGACGGACTTGGCCTTCTCCGTCGGCTACGTCAGTCGGTTCATGCAGCGACCGACGACGGAGCACCAGCAGGCTGTGAAGAGGATCATCCGCTACGTTGCGGGGACTCTCGACCATGGTCTCTACTACCCGAGGTGTCCTGGCAAGGCACACTTCGTCGGGTACAGCGACAGCGACCACGCCGGCGACATCGACACCAGCAAGAGCACGAGCGGGATTCTCTTCTTCCTCGGCGAGTGCCTCGTTAGCTGGCAGTCGGTCAAGCAGCAGGTGGTGGCCCTGTCCAGCTGCGAGGCCGAGTACATGGCGGCATCTGCCGCTTCGACCCAGGCGCTCTGGCTTGCTCGACTGCTTGGTGATCTCCTCGGCAGAGACACTGGAGCAGTAGAGCTCAGGGTGGACAGCAAGTCCGCTCTGGCCCTGGCAAAGAACCCCGTTTTTCACGAACGGAGCAAGCACATCCGGGTGAGGTACCACTTCATTCGAAGCTACTTGGAGGAAGGGAGCATCAAGGCGAGCTACATCAACACCAAGGACCAGCTTGCGGACTTGCTCACCAAGCCTCTTGGGAGGATCAAGCTATCCCTGCCGGGCCGGCCCAAGATAGGCCAACCAAATTTACTTAAGATTAGGGGAAATGTCTTTGAAGAAATCACTGTTGAAGGTGAAACTATTCAGTCAAGCAGGTGGCCATGTACAAGATCATTTGCAGACCCAGTAAATTTTTTTCGAGATAAGAACAGCCATGAGAGGAGTGATTCTCCATCCTTGACAGCAGACTCCGCTGCCAAGAACAATTCTCCTAGAACAGATTCCTCACCGAAAAATAGTGCAAGTGCTTTGGCCACAGAGAACAATCTAACACCTGGGAAGAGACAACCATCCAAGAAGATCTGA More
Protein seq	MSDARSRRSVASSTRRQQDAELAAAEERRRATAQTAAAAARAARLAAAELAAARAEAKAEAAEDAARAAEVEVETLRSSINGSIAGDITADRELEELARGRARERAERWAAAHLHGGGGGPRDRAPADGNPDERRRAGGSPELARGPRRQHGSLSPDRRHGHHGVQTVVRDFGPGGGWPTLTKTNYIEWAAVMRVRLQVRHMWEAVRYGDVDYDEDRRALDALIAAVPPEMQFSLSQKRTAKEAWDTIAAARIGSDRARKSTLQALRKEWENLAFKPGEDVDDFALRLNTLLQKMVQYGDDTYDEERAVEKLFRCVPEKYRQIARSIESLLDLSTMSIEEALGRLKVVDGDEPQPLSGPITIGGKLHLTREQWEASQGDGRKGESSSPTGGRKPRKARGGVQLRWARRRAEGGARRGAQGVATGNHKPARDDACRNCGKLGHWAKDCRQPRRGQAHVSRVEEEEPALLLAHASIELPPAAPAAAAFLHLDEPKVLVSLCNGSSNDKADGWYLDTGATHHMTGRREFFTEFDSSVRGSVKFGDASGVEIKGVGSVTFTAKSGEHRLLTGVYYIPALRNSIISVGQLDENGSRVLVEDGLMRIWDRRRRLLAKVTRGTNRLYILSAQVAQPVCLAARRDDEAWQWHERFGHLHFEALKQLSAKEMVRGMPCLDHVEQLCDVCVVTKQRRLPFPQQTSFRAKERLELVHGDLCGPVTPATPGGRRYFLLLVDDLSRYMWVMVLGSKGEAADAIRHAQAAAEAECGRKLRVLRTDNGGEFTAAEFASYCVDEGIQRHYTAPYSPQQNGVVERRNQTVVGMARALLKQRGMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGHKLAVSHLRVFGCLAFAKELGHIGKLDDRSTPGVFIGYAEGSKAYRILDPETQRVRTVRDVVFDEGRGWVWDKAVDDGSTPTYDDFTIEYVHFEGAGGVGSSSSPSVSTPVPEPPPTPTPTHPRATTSTTTSSSSTPPQPVSPRAPAPIATPPGTSTPTPARVERSPVEFATPLSHDGERIDAYHDGEQLRYRTIEDLLGDQPVPGLVPRDLEAQLHLACDDDEPRFFAEAEKHAAWHAAMQSEMDAVQENRTWELADLPHGHRAITLKWVFKLKRDEARAIVKHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFLNGDLKEEVYVHQPPGFVIPGKEGKVLRLHKALYGLRQAPRAWNAKLDSTLKGMGFEQSPYEAAIYRRGNGGNALLVGVYVDDLVITGTKDAEVAAFKEEMKATFQMSDLGPLSFYLGIEVHQDNSGITLRQTAYAKRVVELAGLTDCNPALTPMEERLKLSRDSTTEEVDATQYRRLVGSLRYLTHTRTDLAFSVGYVSRFMQRPTTEHQQAVKRIIRYVAGTLDHGLYYPRCPGKAHFVGYSDSDHAGDIDTSKSTSGILFFLGECLVSWQSVKQQVVALSSCEAEYMAASAASTQALWLARLLGDLLGRDTGAVELRVDSKSALALAKNPVFHERSKHIRVRYHFIRSYLEEGSIKASYINTKDQLADLLTKPLGRIKLSLPGRPKIGQPNLLKIRGNVFEEITVEGETIQSSRWPCTRSFADPVNFFRDKNSHERSDSPSLTADSAAKNNSPRTDSSPKNSASALATENNLTPGKRQPSKKI More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.183336	0.193385	0.184726

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_09g0473966	RBH	0.861992	0.858626	3.468436
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os08g38640	RBH	0.0	0.0	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os09g0473966	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_09g0013820	RBH	0.308178	0.000000	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_09g0013770	RBH	0.000000	0.000000	0.735596
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_09g0014030	RBH	0.437901	11.450766	1.718786
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_09g0013860	RBH	0.079859	0.197507	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_09g0013970	RBH	0.0	0.000000	1.095745
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_09G0302300	SBH	0	0	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_09g0013870	RBH	0.000000	0.722895	0.663696
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_09G0335100	SBH	0.0047855	0	0.001229
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_09g0013860	RBH	0.111356	0.271235	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_09g0013660	RBH	0.407160	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_09g0013750	RBH	0.0	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_09g0013630	RBH	0.309617	0.0	0.773380
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_09g0013690	RBH	0.000000	6.935944	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_09G014160	RBH	0.000000	0.996000	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_09g0013940	RBH	0.000000	4.397167	1.710797

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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